Wall clock time and date at job start Mon Mar 30 2020 02:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47419 * 2 1 4 4 C 1.50697 * 109.46971 * 120.00152 * 2 1 3 5 5 C 1.38217 * 120.01451 * 21.17247 * 4 2 1 6 6 C 1.38227 * 120.02623 * 180.27325 * 5 4 2 7 7 C 1.38260 * 120.05293 * 359.97438 * 6 5 4 8 8 C 1.38182 * 120.02347 * 0.02562 * 7 6 5 9 9 C 1.38435 * 120.01157 * 201.44321 * 4 2 1 10 10 F 1.35101 * 120.02373 * 359.70822 * 9 4 2 11 11 N 1.46897 * 109.46551 * 239.99981 * 2 1 3 12 12 C 1.46846 * 111.00217 * 298.00507 * 11 2 1 13 13 C 1.53039 * 109.52294 * 174.16804 * 12 11 2 14 14 C 1.53114 * 109.28507 * 59.17726 * 13 12 11 15 15 C 1.53122 * 109.15690 * 302.34744 * 14 13 12 16 16 H 1.08998 * 109.50891 * 297.66956 * 15 14 13 17 17 C 1.50704 * 109.50351 * 177.59268 * 15 14 13 18 18 H 1.07991 * 120.00226 * 240.00143 * 17 15 14 19 19 C 1.37878 * 119.99874 * 59.99828 * 17 15 14 20 20 N 1.31517 * 119.99950 * 0.02562 * 19 17 15 21 21 Si 1.86798 * 120.00260 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46871 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47451 * 120.00111 * 21 19 17 24 24 H 1.48500 * 109.47385 * 240.00498 * 21 19 17 25 25 C 1.46850 * 110.99800 * 173.79434 * 11 2 1 26 26 H 1.09001 * 109.47375 * 59.99730 * 1 2 3 27 27 H 1.09000 * 109.47419 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46609 * 300.00127 * 1 2 3 29 29 H 1.08002 * 119.98701 * 0.27628 * 5 4 2 30 30 H 1.08004 * 119.97214 * 179.97438 * 6 5 4 31 31 H 1.07992 * 119.99308 * 180.02562 * 7 6 5 32 32 H 1.08000 * 120.00948 * 180.02562 * 8 7 6 33 33 H 1.09006 * 109.46461 * 294.17518 * 12 11 2 34 34 H 1.08990 * 109.46306 * 54.14767 * 12 11 2 35 35 H 1.09000 * 109.50254 * 179.12124 * 13 12 11 36 36 H 1.09004 * 109.49986 * 299.19195 * 13 12 11 37 37 H 1.08998 * 109.52228 * 62.25131 * 14 13 12 38 38 H 1.08997 * 109.52631 * 182.44381 * 14 13 12 39 39 H 0.97002 * 120.00089 * 179.97438 * 20 19 17 40 40 H 1.08996 * 109.46223 * 305.85691 * 25 11 2 41 41 H 1.09003 * 109.46179 * 65.82522 * 25 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.2105 -1.5967 1.9009 6 6 1.6690 -2.2442 3.0328 7 6 2.9501 -2.0067 3.4953 8 6 3.7735 -1.1210 2.8266 9 6 3.3150 -0.4714 1.6928 10 9 4.1193 0.3944 1.0380 11 7 2.0195 -0.6925 -1.1995 12 6 1.5880 -2.0961 -1.2098 13 6 1.9898 -2.7449 -2.5363 14 6 3.5094 -2.6575 -2.7022 15 6 3.9381 -1.1889 -2.6394 16 1 3.4828 -0.6412 -3.4645 17 6 5.4388 -1.0979 -2.7426 18 1 6.0091 -0.6511 -1.9418 19 6 6.0838 -1.5853 -3.8596 20 7 5.3892 -2.1291 -4.8351 21 14 7.9440 -1.4732 -3.9874 22 1 8.4857 -0.8230 -2.7671 23 1 8.5145 -2.8382 -4.1163 24 1 8.3107 -0.6687 -5.1804 25 6 3.4799 -0.5851 -1.3099 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 0.2098 -1.7834 1.5403 30 1 1.0260 -2.9363 3.5563 31 1 3.3075 -2.5134 4.3795 32 1 4.7743 -0.9359 3.1879 33 1 2.0640 -2.6285 -0.3863 34 1 0.5052 -2.1440 -1.0953 35 1 1.6832 -3.7909 -2.5373 36 1 1.5026 -2.2221 -3.3594 37 1 3.9959 -3.2136 -1.9008 38 1 3.7956 -3.0797 -3.6655 39 1 5.8429 -2.4716 -5.6211 40 1 3.7711 0.4644 -1.2681 41 1 3.9471 -1.1246 -0.4859 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595610784.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:06 Heat of formation + Delta-G solvation = -21.702963 kcal Electronic energy + Delta-G solvation = -22676.432680 eV Core-core repulsion = 19470.246016 eV Total energy + Delta-G solvation = -3206.186663 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.69187 -39.74165 -37.74974 -34.69834 -32.43037 -30.79301 -30.04832 -29.85385 -28.68459 -25.04864 -24.18470 -22.65092 -22.35293 -21.36896 -19.86983 -18.54016 -17.50050 -16.53921 -16.20299 -15.72652 -15.57116 -14.95831 -14.55505 -14.20680 -14.00523 -13.87443 -13.41720 -12.95308 -12.66683 -12.60372 -12.43666 -12.09205 -11.98543 -11.73230 -11.68241 -11.42236 -10.92262 -10.91783 -10.80177 -10.56376 -10.45013 -9.99582 -9.77210 -9.42799 -9.04485 -8.87071 -8.62771 -8.54370 -8.24902 -7.63976 -5.91994 -3.97214 1.22536 1.25519 3.33233 3.41033 3.45711 3.62696 4.40443 4.42970 4.57210 4.75297 4.80556 4.95480 5.17288 5.34689 5.37928 5.38660 5.49067 5.65569 5.83571 5.88533 5.94588 6.07504 6.08979 6.14394 6.17117 6.27156 6.32511 6.42084 6.47531 6.51064 6.61377 6.77320 6.82404 6.96136 7.06538 7.27165 7.45140 7.70552 7.81340 7.86661 8.14748 8.23493 8.55552 9.07177 9.66649 11.14142 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020030 B = 0.006098 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.543861 B = 4590.459678 C = 5246.820575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.115 3.885 3 H 0.088 0.912 4 C -0.141 4.141 5 C -0.086 4.086 6 C -0.137 4.137 7 C -0.097 4.097 8 C -0.157 4.157 9 C 0.113 3.887 10 F -0.129 7.129 11 N -0.520 5.520 12 C 0.058 3.942 13 C -0.117 4.117 14 C -0.110 4.110 15 C 0.054 3.946 16 H 0.033 0.967 17 C -0.510 4.510 18 H 0.053 0.947 19 C 0.062 3.938 20 N -0.890 5.890 21 Si 0.888 3.112 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.284 1.284 25 C 0.066 3.934 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.132 0.868 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.132 0.868 33 H 0.025 0.975 34 H 0.060 0.940 35 H 0.045 0.955 36 H 0.060 0.940 37 H 0.027 0.973 38 H 0.090 0.910 39 H 0.258 0.742 40 H 0.061 0.939 41 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.756 0.336 14.395 17.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.007 3.993 3 H 0.106 0.894 4 C -0.144 4.144 5 C -0.105 4.105 6 C -0.155 4.155 7 C -0.116 4.116 8 C -0.176 4.176 9 C 0.093 3.907 10 F -0.108 7.108 11 N -0.243 5.243 12 C -0.069 4.069 13 C -0.155 4.155 14 C -0.148 4.148 15 C 0.035 3.965 16 H 0.051 0.949 17 C -0.548 4.548 18 H 0.072 0.928 19 C -0.139 4.139 20 N -0.529 5.529 21 Si 0.716 3.284 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.210 1.210 25 C -0.061 4.061 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.150 0.850 30 H 0.143 0.857 31 H 0.145 0.855 32 H 0.150 0.850 33 H 0.044 0.956 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.046 0.954 38 H 0.109 0.891 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -9.901 0.533 13.746 16.949 hybrid contribution 1.698 -0.337 0.556 1.818 sum -8.203 0.196 14.302 16.488 Atomic orbital electron populations 1.21911 0.94053 1.02006 1.01960 1.20737 0.95650 0.97901 0.85038 0.89389 1.20875 0.93457 1.00635 0.99420 1.21048 0.99731 0.95170 0.94551 1.21159 0.96281 1.00726 0.97316 1.20942 0.93816 0.97233 0.99587 1.21156 1.01293 0.99232 0.95923 1.17604 0.88980 0.91791 0.92339 1.91557 1.72374 1.67014 1.79833 1.62447 1.14579 1.13874 1.33354 1.22097 0.98540 0.88325 0.97973 1.21678 0.99969 0.97776 0.96097 1.21642 0.90446 1.00174 1.02535 1.18681 0.94822 0.91876 0.91071 0.94901 1.21196 0.91799 1.38561 1.03284 0.92824 1.24927 0.97907 0.95314 0.95726 1.69905 1.34817 1.40455 1.07712 0.86598 0.86202 0.77611 0.77967 1.19855 1.21142 1.21041 1.22487 0.83436 1.00168 1.00016 0.91315 0.92220 0.92518 0.85011 0.85734 0.85464 0.85001 0.95630 0.92180 0.93657 0.92130 0.95371 0.89133 0.93204 0.92077 0.95860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 8.05 37.16 0.30 -1.43 16 2 C 0.12 1.80 2.50 -68.87 -0.17 1.62 16 3 H 0.09 1.42 7.82 -51.93 -0.41 1.02 16 4 C -0.14 -2.11 3.84 -104.56 -0.40 -2.51 16 5 C -0.09 -1.07 8.19 -39.59 -0.32 -1.40 16 6 C -0.14 -1.51 10.04 -39.58 -0.40 -1.91 16 7 C -0.10 -1.11 10.04 -39.59 -0.40 -1.51 16 8 C -0.16 -2.14 10.03 -39.51 -0.40 -2.53 16 9 C 0.11 1.82 5.92 -39.42 -0.23 1.58 16 10 F -0.13 -2.37 13.87 2.25 0.03 -2.34 16 11 N -0.52 -9.82 4.63 -228.08 -1.06 -10.88 16 12 C 0.06 1.05 4.53 -3.83 -0.02 1.03 16 13 C -0.12 -2.36 6.09 -26.65 -0.16 -2.52 16 14 C -0.11 -2.69 5.02 -26.61 -0.13 -2.82 16 15 C 0.05 1.41 2.26 -91.69 -0.21 1.20 16 16 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 17 C -0.51 -14.46 8.56 -34.44 -0.29 -14.75 16 18 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 19 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 20 N -0.89 -25.92 11.35 55.43 0.63 -25.29 16 21 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 22 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 25 C 0.07 1.46 3.10 -3.83 -0.01 1.45 16 26 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.68 4.83 -51.93 -0.25 0.43 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.13 1.40 5.99 -52.49 -0.31 1.08 16 30 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 31 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 32 H 0.13 1.59 8.06 -52.49 -0.42 1.16 16 33 H 0.03 0.48 6.83 -51.93 -0.35 0.12 16 34 H 0.06 0.92 6.07 -51.93 -0.32 0.61 16 35 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.09 2.46 6.15 -51.93 -0.32 2.14 16 39 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.06 1.40 7.44 -51.93 -0.39 1.02 16 41 H 0.02 0.54 5.73 -51.93 -0.30 0.24 16 LS Contribution 314.16 15.07 4.73 4.73 Total: -1.00 -29.89 314.16 -9.62 -39.51 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -5.99 Total: 0.28 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: -2.95 Total: -22.83 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: -0.43 Total: -36.16 kcal Atomic # 9 Polarization: -2.37 SS G_CDS: 0.03 Total: -2.34 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.89 -9.62 -39.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595610784.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.808 kcal (2) G-P(sol) polarization free energy of solvation -29.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds