Wall clock time and date at job start Mon Mar 30 2020 02:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47419 * 2 1 4 4 C 1.50697 * 109.46971 * 120.00152 * 2 1 3 5 5 C 1.38217 * 120.01451 * 21.17247 * 4 2 1 6 6 C 1.38227 * 120.02623 * 180.27325 * 5 4 2 7 7 C 1.38260 * 120.05293 * 359.97438 * 6 5 4 8 8 C 1.38182 * 120.02347 * 0.02562 * 7 6 5 9 9 C 1.38435 * 120.01157 * 201.44321 * 4 2 1 10 10 F 1.35101 * 120.02373 * 359.70822 * 9 4 2 11 11 N 1.46897 * 109.46551 * 239.99981 * 2 1 3 12 12 C 1.46846 * 111.00217 * 298.00507 * 11 2 1 13 13 C 1.53039 * 109.52294 * 174.16804 * 12 11 2 14 14 C 1.53114 * 109.28507 * 59.17726 * 13 12 11 15 15 C 1.53122 * 109.15690 * 302.34744 * 14 13 12 16 16 H 1.08998 * 109.50891 * 297.66956 * 15 14 13 17 17 C 1.50704 * 109.50351 * 177.59268 * 15 14 13 18 18 H 1.07991 * 120.00226 * 240.00143 * 17 15 14 19 19 C 1.37878 * 119.99874 * 59.99828 * 17 15 14 20 20 N 1.31517 * 119.99950 * 0.02562 * 19 17 15 21 21 Si 1.86798 * 120.00260 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46871 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47451 * 120.00111 * 21 19 17 24 24 H 1.48500 * 109.47385 * 240.00498 * 21 19 17 25 25 C 1.46850 * 110.99800 * 173.79434 * 11 2 1 26 26 H 1.09001 * 109.47375 * 59.99730 * 1 2 3 27 27 H 1.09000 * 109.47419 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46609 * 300.00127 * 1 2 3 29 29 H 1.08002 * 119.98701 * 0.27628 * 5 4 2 30 30 H 1.08004 * 119.97214 * 179.97438 * 6 5 4 31 31 H 1.07992 * 119.99308 * 180.02562 * 7 6 5 32 32 H 1.08000 * 120.00948 * 180.02562 * 8 7 6 33 33 H 1.09006 * 109.46461 * 294.17518 * 12 11 2 34 34 H 1.08990 * 109.46306 * 54.14767 * 12 11 2 35 35 H 1.09000 * 109.50254 * 179.12124 * 13 12 11 36 36 H 1.09004 * 109.49986 * 299.19195 * 13 12 11 37 37 H 1.08998 * 109.52228 * 62.25131 * 14 13 12 38 38 H 1.08997 * 109.52631 * 182.44381 * 14 13 12 39 39 H 0.97002 * 120.00089 * 179.97438 * 20 19 17 40 40 H 1.08996 * 109.46223 * 305.85691 * 25 11 2 41 41 H 1.09003 * 109.46179 * 65.82522 * 25 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.2105 -1.5967 1.9009 6 6 1.6690 -2.2442 3.0328 7 6 2.9501 -2.0067 3.4953 8 6 3.7735 -1.1210 2.8266 9 6 3.3150 -0.4714 1.6928 10 9 4.1193 0.3944 1.0380 11 7 2.0195 -0.6925 -1.1995 12 6 1.5880 -2.0961 -1.2098 13 6 1.9898 -2.7449 -2.5363 14 6 3.5094 -2.6575 -2.7022 15 6 3.9381 -1.1889 -2.6394 16 1 3.4828 -0.6412 -3.4645 17 6 5.4388 -1.0979 -2.7426 18 1 6.0091 -0.6511 -1.9418 19 6 6.0838 -1.5853 -3.8596 20 7 5.3892 -2.1291 -4.8351 21 14 7.9440 -1.4732 -3.9874 22 1 8.4857 -0.8230 -2.7671 23 1 8.5145 -2.8382 -4.1163 24 1 8.3107 -0.6687 -5.1804 25 6 3.4799 -0.5851 -1.3099 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 0.2098 -1.7834 1.5403 30 1 1.0260 -2.9363 3.5563 31 1 3.3075 -2.5134 4.3795 32 1 4.7743 -0.9359 3.1879 33 1 2.0640 -2.6285 -0.3863 34 1 0.5052 -2.1440 -1.0953 35 1 1.6832 -3.7909 -2.5373 36 1 1.5026 -2.2221 -3.3594 37 1 3.9959 -3.2136 -1.9008 38 1 3.7956 -3.0797 -3.6655 39 1 5.8429 -2.4716 -5.6211 40 1 3.7711 0.4644 -1.2681 41 1 3.9471 -1.1246 -0.4859 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595610784.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:05 Heat of formation + Delta-G solvation = -38.815378 kcal Electronic energy + Delta-G solvation = -22677.174730 eV Core-core repulsion = 19470.246016 eV Total energy + Delta-G solvation = -3206.928713 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.95081 -40.96476 -39.10754 -36.30556 -34.30483 -32.11632 -31.55706 -31.20467 -29.88579 -26.98442 -25.56674 -24.12358 -23.41656 -22.99361 -21.28362 -20.21977 -18.68300 -18.41669 -17.38539 -17.19936 -16.77452 -16.55754 -16.19951 -15.60678 -15.21308 -15.01981 -14.99844 -14.55688 -14.28890 -14.10491 -14.00774 -13.33753 -13.16644 -13.08710 -12.88434 -12.84800 -12.73027 -12.55640 -12.44608 -12.00764 -11.80755 -11.71453 -11.64468 -11.40832 -10.86076 -10.67236 -10.39857 -9.91051 -9.63009 -9.14796 -8.10974 -6.24893 0.21618 0.27920 1.35910 1.37080 1.49274 2.39689 2.64401 3.13365 3.15199 3.38093 3.67229 3.76412 4.04944 4.19255 4.21337 4.26992 4.37998 4.41724 4.42994 4.53812 4.63954 4.71089 4.87689 4.89461 4.94952 5.01420 5.07161 5.09198 5.13148 5.16609 5.23903 5.36172 5.36906 5.45416 5.49201 5.51638 5.60790 5.94130 5.99254 6.11028 6.18670 6.34693 6.44864 6.86719 7.42463 8.93880 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020030 B = 0.006098 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.543861 B = 4590.459678 C = 5246.820575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.113 3.887 3 H 0.068 0.932 4 C -0.156 4.156 5 C -0.086 4.086 6 C -0.127 4.127 7 C -0.092 4.092 8 C -0.170 4.170 9 C 0.070 3.930 10 F -0.156 7.156 11 N -0.530 5.530 12 C 0.066 3.934 13 C -0.112 4.112 14 C -0.101 4.101 15 C 0.052 3.948 16 H -0.005 1.005 17 C -0.536 4.536 18 H 0.042 0.958 19 C 0.016 3.984 20 N -0.914 5.914 21 Si 0.952 3.048 22 H -0.272 1.272 23 H -0.276 1.276 24 H -0.277 1.277 25 C 0.090 3.910 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.157 0.843 30 H 0.163 0.837 31 H 0.161 0.839 32 H 0.137 0.863 33 H 0.023 0.977 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.053 0.947 37 H 0.015 0.985 38 H 0.059 0.941 39 H 0.261 0.739 40 H 0.041 0.959 41 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.530 -1.134 16.484 20.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.005 3.995 3 H 0.087 0.913 4 C -0.159 4.159 5 C -0.104 4.104 6 C -0.145 4.145 7 C -0.110 4.110 8 C -0.189 4.189 9 C 0.050 3.950 10 F -0.135 7.135 11 N -0.253 5.253 12 C -0.061 4.061 13 C -0.150 4.150 14 C -0.139 4.139 15 C 0.033 3.967 16 H 0.014 0.986 17 C -0.574 4.574 18 H 0.060 0.940 19 C -0.183 4.183 20 N -0.553 5.553 21 Si 0.778 3.222 22 H -0.197 1.197 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.037 4.037 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.098 0.902 29 H 0.175 0.825 30 H 0.181 0.819 31 H 0.178 0.822 32 H 0.155 0.845 33 H 0.041 0.959 34 H 0.117 0.883 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.034 0.966 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.059 0.941 41 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -11.691 -0.932 15.846 19.714 hybrid contribution 2.233 0.115 -0.034 2.236 sum -9.458 -0.817 15.812 18.442 Atomic orbital electron populations 1.21876 0.90811 1.03301 1.03026 1.20777 0.97968 0.96563 0.84201 0.91338 1.20858 0.93488 1.01854 0.99683 1.21377 1.00333 0.94065 0.94644 1.21644 0.96349 1.00046 0.96436 1.21390 0.93713 0.95919 0.99988 1.21409 1.02216 0.99734 0.95547 1.18140 0.89832 0.93118 0.93913 1.91480 1.73248 1.68141 1.80637 1.62363 1.11775 1.15000 1.36126 1.22083 1.00669 0.87215 0.96173 1.21612 0.96191 0.99768 0.97413 1.21426 0.93939 0.98385 1.00195 1.18610 0.93582 0.92823 0.91653 0.98640 1.21494 0.93407 1.39090 1.03448 0.93983 1.25689 1.02513 0.94790 0.95278 1.70032 1.36560 1.40661 1.08046 0.85598 0.80636 0.77972 0.78028 1.19690 1.20153 1.20210 1.21984 0.86183 0.98224 0.97341 0.91610 0.90628 0.90194 0.82510 0.81899 0.82162 0.84526 0.95912 0.88257 0.90976 0.92840 0.96588 0.92242 0.92943 0.94052 0.96952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 8.05 71.98 0.58 -2.27 16 2 C 0.11 3.45 2.50 44.17 0.11 3.56 16 3 H 0.07 2.31 7.82 -2.39 -0.02 2.29 16 4 C -0.16 -4.49 3.84 -19.82 -0.08 -4.57 16 5 C -0.09 -1.82 8.19 22.26 0.18 -1.64 16 6 C -0.13 -2.23 10.04 22.27 0.22 -2.01 16 7 C -0.09 -1.79 10.04 22.26 0.22 -1.57 16 8 C -0.17 -4.51 10.03 22.31 0.22 -4.29 16 9 C 0.07 2.28 5.92 22.37 0.13 2.41 16 10 F -0.16 -6.14 13.87 44.97 0.62 -5.52 16 11 N -0.53 -20.07 4.63 -875.52 -4.06 -24.13 16 12 C 0.07 2.24 4.53 86.33 0.39 2.63 16 13 C -0.11 -4.42 6.09 30.65 0.19 -4.23 16 14 C -0.10 -5.11 5.02 30.67 0.15 -4.96 16 15 C 0.05 2.85 2.26 -11.49 -0.03 2.82 16 16 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 17 C -0.54 -31.90 8.56 25.60 0.22 -31.68 16 18 H 0.04 2.53 7.74 -2.92 -0.02 2.50 16 19 C 0.02 0.94 5.30 84.65 0.45 1.39 16 20 N -0.91 -54.87 11.35 21.45 0.24 -54.62 16 21 Si 0.95 45.81 29.54 68.60 2.03 47.84 16 22 H -0.27 -12.92 7.11 99.48 0.71 -12.22 16 23 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 24 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 25 C 0.09 4.24 3.10 86.32 0.27 4.51 16 26 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.08 1.37 4.83 -2.39 -0.01 1.36 16 28 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 29 H 0.16 2.48 5.99 -2.91 -0.02 2.46 16 30 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 31 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 32 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 33 H 0.02 0.80 6.83 -2.38 -0.02 0.78 16 34 H 0.10 2.63 6.07 -2.39 -0.01 2.62 16 35 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.05 2.18 8.14 -2.38 -0.02 2.16 16 37 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.06 3.35 6.15 -2.39 -0.01 3.34 16 39 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 40 H 0.04 2.04 7.44 -2.39 -0.02 2.03 16 41 H 0.01 0.60 5.73 -2.39 -0.01 0.59 16 Total: -1.00 -69.18 314.16 3.09 -66.08 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 1.02 Total: 10.23 kcal Atomic # 6 Polarization: -43.12 SS G_CDS: 3.24 Total: -39.88 kcal Atomic # 7 Polarization: -74.94 SS G_CDS: -3.81 Total: -78.75 kcal Atomic # 9 Polarization: -6.14 SS G_CDS: 0.62 Total: -5.52 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -69.18 3.09 -66.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595610784.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.268 kcal (2) G-P(sol) polarization free energy of solvation -69.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds