Wall clock time and date at job start Mon Mar 30 2020 02:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47564 * 2 1 4 4 C 1.50702 * 109.47273 * 120.00219 * 2 1 3 5 5 C 1.38219 * 120.00961 * 15.57895 * 4 2 1 6 6 C 1.38225 * 120.02109 * 179.97438 * 5 4 2 7 7 C 1.38261 * 120.05416 * 0.02562 * 6 5 4 8 8 C 1.38180 * 120.02754 * 0.02562 * 7 6 5 9 9 C 1.38444 * 120.01175 * 195.29918 * 4 2 1 10 10 F 1.35095 * 120.02462 * 0.02562 * 9 4 2 11 11 N 1.46900 * 109.47239 * 240.00168 * 2 1 3 12 12 C 1.46847 * 110.99844 * 307.51270 * 11 2 1 13 13 C 1.53038 * 109.52164 * 185.83380 * 12 11 2 14 14 C 1.53112 * 109.28356 * 300.82184 * 13 12 11 15 15 C 1.53117 * 109.16140 * 57.65488 * 14 13 12 16 16 H 1.08996 * 109.50633 * 62.32557 * 15 14 13 17 17 C 1.50700 * 109.50459 * 182.40786 * 15 14 13 18 18 H 1.08005 * 119.99887 * 119.99446 * 17 15 14 19 19 C 1.37873 * 120.00048 * 299.99594 * 17 15 14 20 20 N 1.31520 * 119.99931 * 0.02562 * 19 17 15 21 21 Si 1.86799 * 120.00226 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46773 * 60.00655 * 21 19 17 23 23 H 1.48495 * 109.47071 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47236 * 300.00630 * 21 19 17 25 25 C 1.46851 * 110.99894 * 71.71969 * 11 2 1 26 26 H 1.09005 * 109.46952 * 299.99781 * 1 2 3 27 27 H 1.08997 * 109.46928 * 59.99341 * 1 2 3 28 28 H 1.09000 * 109.47564 * 179.97438 * 1 2 3 29 29 H 1.07996 * 119.99186 * 359.95481 * 5 4 2 30 30 H 1.08004 * 119.96981 * 179.97438 * 6 5 4 31 31 H 1.08000 * 119.99048 * 179.97438 * 7 6 5 32 32 H 1.08001 * 120.01687 * 179.97438 * 8 7 6 33 33 H 1.09001 * 109.46376 * 305.85272 * 12 11 2 34 34 H 1.09001 * 109.46478 * 65.82287 * 12 11 2 35 35 H 1.09001 * 109.50257 * 60.76557 * 13 12 11 36 36 H 1.09008 * 109.50193 * 180.83934 * 13 12 11 37 37 H 1.09001 * 109.52600 * 177.56308 * 14 13 12 38 38 H 1.09007 * 109.52341 * 297.74608 * 14 13 12 39 39 H 0.96998 * 119.99810 * 179.97438 * 20 19 17 40 40 H 1.09005 * 109.46258 * 294.17802 * 25 11 2 41 41 H 1.08999 * 109.46619 * 54.14866 * 25 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.1758 -1.5069 1.9670 6 6 1.6365 -2.1591 3.0953 7 6 2.9541 -2.0152 3.4888 8 6 3.8120 -1.2186 2.7546 9 6 3.3534 -0.5702 1.6202 10 9 4.1926 0.2039 0.8981 11 7 2.0197 -0.6925 -1.1994 12 6 1.4080 -2.0214 -1.3264 13 6 2.0464 -2.7682 -2.4998 14 6 1.8360 -1.9641 -3.7856 15 6 2.4395 -0.5679 -3.6096 16 1 3.5135 -0.6538 -3.4447 17 6 2.1848 0.2503 -4.8493 18 1 1.6188 1.1678 -4.7839 19 6 2.6741 -0.1725 -6.0669 20 7 3.3629 -1.2901 -6.1467 21 14 2.3578 0.8413 -7.6037 22 1 2.9430 2.1954 -7.4325 23 1 2.9842 0.1751 -8.7737 24 1 0.8943 0.9590 -7.8265 25 6 1.7897 0.1152 -2.4041 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 0.1462 -1.6195 1.6610 30 1 0.9664 -2.7809 3.6704 31 1 3.3128 -2.5249 4.3708 32 1 4.8410 -1.1060 3.0624 33 1 1.5685 -2.5845 -0.4070 34 1 0.3380 -1.9133 -1.5038 35 1 3.1141 -2.8889 -2.3166 36 1 1.5818 -3.7489 -2.6030 37 1 2.3265 -2.4709 -4.6167 38 1 0.7688 -1.8765 -3.9900 39 1 3.7069 -1.5877 -7.0034 40 1 0.7178 0.2133 -2.5765 41 1 2.2274 1.1041 -2.2675 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595610785.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:09 Heat of formation + Delta-G solvation = -24.848759 kcal Electronic energy + Delta-G solvation = -22168.270187 eV Core-core repulsion = 18961.947112 eV Total energy + Delta-G solvation = -3206.323075 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.57384 -39.66469 -37.97896 -34.69803 -32.45829 -30.83359 -30.29667 -29.69441 -28.36445 -24.97549 -24.71587 -22.47302 -22.32343 -21.50231 -19.95954 -18.31655 -17.51234 -16.46505 -16.20351 -15.70566 -15.52139 -14.92138 -14.53599 -14.25142 -14.01331 -13.90240 -13.64169 -13.06549 -12.79246 -12.56603 -12.27677 -12.20169 -11.98477 -11.89718 -11.64409 -11.39384 -11.01363 -10.89319 -10.85038 -10.63653 -10.45739 -10.04564 -9.77698 -9.42870 -9.05975 -8.92652 -8.66868 -8.53509 -8.26238 -7.58967 -5.93420 -3.99674 1.21019 1.23421 3.34574 3.39256 3.41549 3.58990 4.40852 4.43139 4.60071 4.70888 4.78211 4.93210 5.17074 5.33688 5.36016 5.37122 5.41391 5.67533 5.73862 5.88384 5.89578 5.99280 6.07255 6.10254 6.14735 6.24286 6.32898 6.37934 6.42137 6.51511 6.56519 6.77086 6.80164 6.94214 7.01678 7.26616 7.43986 7.71069 7.78605 7.85499 8.13618 8.22208 8.52136 9.04196 9.64312 11.12474 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030093 B = 0.004492 C = 0.004423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.220884 B = 6232.211730 C = 6329.215737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.117 3.883 3 H 0.088 0.912 4 C -0.098 4.098 5 C -0.092 4.092 6 C -0.137 4.137 7 C -0.098 4.098 8 C -0.161 4.161 9 C 0.124 3.876 10 F -0.128 7.128 11 N -0.524 5.524 12 C 0.061 3.939 13 C -0.117 4.117 14 C -0.109 4.109 15 C 0.056 3.944 16 H 0.034 0.966 17 C -0.514 4.514 18 H 0.052 0.948 19 C 0.063 3.937 20 N -0.888 5.888 21 Si 0.890 3.110 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.279 1.279 25 C 0.068 3.932 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.132 0.868 30 H 0.124 0.876 31 H 0.127 0.873 32 H 0.131 0.869 33 H 0.057 0.943 34 H 0.027 0.973 35 H 0.059 0.941 36 H 0.045 0.955 37 H 0.090 0.910 38 H 0.029 0.971 39 H 0.260 0.740 40 H 0.022 0.978 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.033 -1.922 17.971 18.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.008 3.992 3 H 0.106 0.894 4 C -0.099 4.099 5 C -0.110 4.110 6 C -0.155 4.155 7 C -0.116 4.116 8 C -0.180 4.180 9 C 0.104 3.896 10 F -0.107 7.107 11 N -0.248 5.248 12 C -0.067 4.067 13 C -0.155 4.155 14 C -0.147 4.147 15 C 0.037 3.963 16 H 0.052 0.948 17 C -0.553 4.553 18 H 0.071 0.929 19 C -0.138 4.138 20 N -0.527 5.527 21 Si 0.718 3.282 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.204 1.204 25 C -0.058 4.058 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.149 0.851 30 H 0.142 0.858 31 H 0.145 0.855 32 H 0.149 0.851 33 H 0.075 0.925 34 H 0.045 0.955 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.108 0.892 38 H 0.048 0.952 39 H 0.070 0.930 40 H 0.040 0.960 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.390 -2.061 17.827 18.263 hybrid contribution -0.866 0.717 -1.069 1.551 sum -4.256 -1.345 16.758 17.342 Atomic orbital electron populations 1.22519 0.97207 1.02315 1.02317 1.20507 0.92695 0.97575 0.88410 0.89371 1.19964 0.92419 0.99870 0.97673 1.21087 0.99938 0.95477 0.94518 1.21128 0.95990 1.00860 0.97550 1.20931 0.93450 0.97834 0.99422 1.21143 1.01172 1.00072 0.95635 1.17550 0.87748 0.93305 0.91011 1.91535 1.70242 1.72152 1.76744 1.62216 1.57521 1.03040 1.02007 1.22059 0.95869 0.90219 0.98542 1.21676 1.00377 0.97279 0.96177 1.21643 0.98938 0.98358 0.95809 1.18652 0.96043 0.91665 0.89932 0.94799 1.21107 1.34250 1.07579 0.92379 0.92943 1.24925 0.95025 0.95061 0.98773 1.69887 1.36254 1.21502 1.25069 0.86698 0.78339 0.80449 0.82708 1.20315 1.21339 1.20425 1.22336 0.97971 0.96083 0.89430 0.92365 0.91704 0.91862 0.85066 0.85768 0.85518 0.85061 0.92491 0.95478 0.92246 0.93660 0.89157 0.95234 0.93043 0.96008 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.45 7.25 37.16 0.27 -2.18 16 2 C 0.12 1.82 2.22 -68.86 -0.15 1.66 16 3 H 0.09 1.42 7.89 -51.93 -0.41 1.02 16 4 C -0.10 -1.39 4.43 -104.55 -0.46 -1.85 16 5 C -0.09 -1.07 8.35 -39.59 -0.33 -1.41 16 6 C -0.14 -1.38 10.04 -39.58 -0.40 -1.78 16 7 C -0.10 -0.98 10.04 -39.59 -0.40 -1.38 16 8 C -0.16 -1.93 10.03 -39.51 -0.40 -2.32 16 9 C 0.12 1.83 7.25 -39.42 -0.29 1.54 16 10 F -0.13 -2.19 16.75 2.25 0.04 -2.15 16 11 N -0.52 -9.87 4.58 -228.07 -1.05 -10.92 16 12 C 0.06 1.09 4.50 -3.83 -0.02 1.07 16 13 C -0.12 -2.36 6.09 -26.65 -0.16 -2.52 16 14 C -0.11 -2.63 5.02 -26.61 -0.13 -2.76 16 15 C 0.06 1.42 2.26 -91.69 -0.21 1.21 16 16 H 0.03 0.97 8.14 -51.93 -0.42 0.55 16 17 C -0.51 -14.24 8.56 -34.44 -0.29 -14.54 16 18 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 19 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 20 N -0.89 -25.65 11.35 55.43 0.63 -25.02 16 21 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 C 0.07 1.47 4.38 -3.83 -0.02 1.45 16 26 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 27 H 0.06 0.93 6.88 -51.93 -0.36 0.57 16 28 H 0.06 0.80 5.14 -51.93 -0.27 0.53 16 29 H 0.13 1.36 5.96 -52.49 -0.31 1.04 16 30 H 0.12 0.93 8.06 -52.48 -0.42 0.50 16 31 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.06 0.94 6.59 -51.93 -0.34 0.60 16 34 H 0.03 0.47 6.57 -51.93 -0.34 0.13 16 35 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.04 0.82 8.14 -51.92 -0.42 0.39 16 37 H 0.09 2.43 6.15 -51.93 -0.32 2.11 16 38 H 0.03 0.70 8.14 -51.92 -0.42 0.28 16 39 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.02 0.46 6.93 -51.93 -0.36 0.10 16 41 H 0.06 1.27 8.00 -51.93 -0.42 0.85 16 LS Contribution 320.31 15.07 4.83 4.83 Total: -1.00 -29.19 320.31 -9.70 -38.90 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -6.05 Total: 0.05 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: -3.08 Total: -22.12 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: -0.42 Total: -35.94 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.15 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.19 -9.70 -38.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595610785.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.046 kcal (2) G-P(sol) polarization free energy of solvation -29.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds