Wall clock time and date at job start Mon Mar 30 2020 02:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47564 * 2 1 4 4 C 1.50702 * 109.47273 * 120.00219 * 2 1 3 5 5 C 1.38219 * 120.00961 * 15.57895 * 4 2 1 6 6 C 1.38225 * 120.02109 * 179.97438 * 5 4 2 7 7 C 1.38261 * 120.05416 * 0.02562 * 6 5 4 8 8 C 1.38180 * 120.02754 * 0.02562 * 7 6 5 9 9 C 1.38444 * 120.01175 * 195.29918 * 4 2 1 10 10 F 1.35095 * 120.02462 * 0.02562 * 9 4 2 11 11 N 1.46900 * 109.47239 * 240.00168 * 2 1 3 12 12 C 1.46847 * 110.99844 * 307.51270 * 11 2 1 13 13 C 1.53038 * 109.52164 * 185.83380 * 12 11 2 14 14 C 1.53112 * 109.28356 * 300.82184 * 13 12 11 15 15 C 1.53117 * 109.16140 * 57.65488 * 14 13 12 16 16 H 1.08996 * 109.50633 * 62.32557 * 15 14 13 17 17 C 1.50700 * 109.50459 * 182.40786 * 15 14 13 18 18 H 1.08005 * 119.99887 * 119.99446 * 17 15 14 19 19 C 1.37873 * 120.00048 * 299.99594 * 17 15 14 20 20 N 1.31520 * 119.99931 * 0.02562 * 19 17 15 21 21 Si 1.86799 * 120.00226 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46773 * 60.00655 * 21 19 17 23 23 H 1.48495 * 109.47071 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47236 * 300.00630 * 21 19 17 25 25 C 1.46851 * 110.99894 * 71.71969 * 11 2 1 26 26 H 1.09005 * 109.46952 * 299.99781 * 1 2 3 27 27 H 1.08997 * 109.46928 * 59.99341 * 1 2 3 28 28 H 1.09000 * 109.47564 * 179.97438 * 1 2 3 29 29 H 1.07996 * 119.99186 * 359.95481 * 5 4 2 30 30 H 1.08004 * 119.96981 * 179.97438 * 6 5 4 31 31 H 1.08000 * 119.99048 * 179.97438 * 7 6 5 32 32 H 1.08001 * 120.01687 * 179.97438 * 8 7 6 33 33 H 1.09001 * 109.46376 * 305.85272 * 12 11 2 34 34 H 1.09001 * 109.46478 * 65.82287 * 12 11 2 35 35 H 1.09001 * 109.50257 * 60.76557 * 13 12 11 36 36 H 1.09008 * 109.50193 * 180.83934 * 13 12 11 37 37 H 1.09001 * 109.52600 * 177.56308 * 14 13 12 38 38 H 1.09007 * 109.52341 * 297.74608 * 14 13 12 39 39 H 0.96998 * 119.99810 * 179.97438 * 20 19 17 40 40 H 1.09005 * 109.46258 * 294.17802 * 25 11 2 41 41 H 1.08999 * 109.46619 * 54.14866 * 25 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.1758 -1.5069 1.9670 6 6 1.6365 -2.1591 3.0953 7 6 2.9541 -2.0152 3.4888 8 6 3.8120 -1.2186 2.7546 9 6 3.3534 -0.5702 1.6202 10 9 4.1926 0.2039 0.8981 11 7 2.0197 -0.6925 -1.1994 12 6 1.4080 -2.0214 -1.3264 13 6 2.0464 -2.7682 -2.4998 14 6 1.8360 -1.9641 -3.7856 15 6 2.4395 -0.5679 -3.6096 16 1 3.5135 -0.6538 -3.4447 17 6 2.1848 0.2503 -4.8493 18 1 1.6188 1.1678 -4.7839 19 6 2.6741 -0.1725 -6.0669 20 7 3.3629 -1.2901 -6.1467 21 14 2.3578 0.8413 -7.6037 22 1 2.9430 2.1954 -7.4325 23 1 2.9842 0.1751 -8.7737 24 1 0.8943 0.9590 -7.8265 25 6 1.7897 0.1152 -2.4041 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 0.1462 -1.6195 1.6610 30 1 0.9664 -2.7809 3.6704 31 1 3.3128 -2.5249 4.3708 32 1 4.8410 -1.1060 3.0624 33 1 1.5685 -2.5845 -0.4070 34 1 0.3380 -1.9133 -1.5038 35 1 3.1141 -2.8889 -2.3166 36 1 1.5818 -3.7489 -2.6030 37 1 2.3265 -2.4709 -4.6167 38 1 0.7688 -1.8765 -3.9900 39 1 3.7069 -1.5877 -7.0034 40 1 0.7178 0.2133 -2.5765 41 1 2.2274 1.1041 -2.2675 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595610785.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:08 Heat of formation + Delta-G solvation = -40.836772 kcal Electronic energy + Delta-G solvation = -22168.963479 eV Core-core repulsion = 18961.947112 eV Total energy + Delta-G solvation = -3207.016367 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.73323 -40.85602 -39.26461 -36.29324 -34.28709 -32.13535 -31.52608 -31.24072 -29.51843 -26.93868 -25.99623 -23.84184 -23.45081 -23.06255 -21.30892 -20.01953 -18.59409 -18.34896 -17.25682 -17.06588 -16.69369 -16.43931 -16.12431 -15.63318 -15.34235 -15.00493 -14.87738 -14.73941 -14.39088 -14.00222 -13.83117 -13.42782 -13.20273 -13.05128 -12.93698 -12.80550 -12.72016 -12.62899 -12.49981 -11.94179 -11.84774 -11.74913 -11.58165 -11.38077 -10.86326 -10.68539 -10.38201 -9.85413 -9.51451 -9.05723 -8.07871 -6.22675 0.29474 0.34154 1.40753 1.42536 1.50118 2.42283 2.67319 3.18683 3.21981 3.47728 3.63404 3.84187 4.11794 4.18786 4.22570 4.25200 4.33156 4.40971 4.48571 4.51529 4.62314 4.66478 4.77585 4.83610 4.89295 5.01193 5.05490 5.07962 5.15181 5.19178 5.23187 5.37764 5.38048 5.47818 5.53479 5.55648 5.62747 5.95996 6.05152 6.13567 6.21529 6.36923 6.46134 6.89805 7.45190 8.96655 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030093 B = 0.004492 C = 0.004423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.220884 B = 6232.211730 C = 6329.215737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.117 3.883 3 H 0.070 0.930 4 C -0.115 4.115 5 C -0.093 4.093 6 C -0.127 4.127 7 C -0.090 4.090 8 C -0.166 4.166 9 C 0.084 3.916 10 F -0.155 7.155 11 N -0.540 5.540 12 C 0.069 3.931 13 C -0.111 4.111 14 C -0.100 4.100 15 C 0.054 3.946 16 H -0.012 1.012 17 C -0.537 4.537 18 H 0.051 0.949 19 C 0.014 3.986 20 N -0.916 5.916 21 Si 0.955 3.045 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.269 1.269 25 C 0.085 3.915 26 H 0.082 0.918 27 H 0.050 0.950 28 H 0.075 0.925 29 H 0.149 0.851 30 H 0.160 0.840 31 H 0.162 0.838 32 H 0.143 0.857 33 H 0.080 0.920 34 H 0.039 0.961 35 H 0.041 0.959 36 H 0.071 0.929 37 H 0.056 0.944 38 H 0.026 0.974 39 H 0.260 0.740 40 H 0.025 0.975 41 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.878 -2.903 20.220 21.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.009 3.991 3 H 0.088 0.912 4 C -0.117 4.117 5 C -0.111 4.111 6 C -0.145 4.145 7 C -0.108 4.108 8 C -0.185 4.185 9 C 0.065 3.935 10 F -0.134 7.134 11 N -0.264 5.264 12 C -0.058 4.058 13 C -0.149 4.149 14 C -0.139 4.139 15 C 0.035 3.965 16 H 0.006 0.994 17 C -0.576 4.576 18 H 0.070 0.930 19 C -0.185 4.185 20 N -0.555 5.555 21 Si 0.781 3.219 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.194 1.194 25 C -0.042 4.042 26 H 0.101 0.899 27 H 0.069 0.931 28 H 0.093 0.907 29 H 0.167 0.833 30 H 0.178 0.822 31 H 0.179 0.821 32 H 0.160 0.840 33 H 0.098 0.902 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.045 0.955 39 H 0.069 0.931 40 H 0.043 0.957 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.244 -3.039 20.097 20.991 hybrid contribution -0.245 0.985 -1.662 1.948 sum -5.489 -2.053 18.434 19.343 Atomic orbital electron populations 1.22438 0.95002 1.03195 1.02820 1.20482 0.94394 0.96630 0.87614 0.91169 1.19903 0.92734 1.01342 0.97672 1.21327 1.00308 0.94767 0.94744 1.21575 0.96427 0.99812 0.96645 1.21385 0.93209 0.96465 0.99730 1.21405 1.02322 0.99894 0.94873 1.18040 0.88180 0.94833 0.92489 1.91462 1.71078 1.73183 1.77651 1.62088 1.58876 1.03456 1.01969 1.21995 0.96013 0.89530 0.98262 1.21597 0.99855 0.98307 0.95173 1.21427 0.97885 0.97717 0.96840 1.18565 0.93686 0.92996 0.91222 0.99353 1.21485 1.34465 1.07930 0.93696 0.93038 1.25734 0.94727 0.96121 1.01878 1.70044 1.36914 1.22868 1.25717 0.85658 0.78582 0.78874 0.78802 1.19820 1.20872 1.19441 1.21944 0.97340 0.95467 0.89473 0.89932 0.93119 0.90671 0.83331 0.82202 0.82051 0.83958 0.90211 0.94287 0.94050 0.91056 0.92496 0.95481 0.93075 0.95678 0.93507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.31 7.25 71.98 0.52 -3.79 16 2 C 0.12 3.60 2.22 44.17 0.10 3.69 16 3 H 0.07 2.36 7.89 -2.39 -0.02 2.34 16 4 C -0.12 -3.12 4.43 -19.82 -0.09 -3.21 16 5 C -0.09 -1.85 8.35 22.26 0.19 -1.67 16 6 C -0.13 -1.95 10.04 22.27 0.22 -1.72 16 7 C -0.09 -1.44 10.04 22.26 0.22 -1.22 16 8 C -0.17 -3.68 10.03 22.31 0.22 -3.46 16 9 C 0.08 2.47 7.25 22.38 0.16 2.63 16 10 F -0.15 -5.57 16.75 44.97 0.75 -4.81 16 11 N -0.54 -20.56 4.58 -875.48 -4.01 -24.57 16 12 C 0.07 2.39 4.50 86.33 0.39 2.78 16 13 C -0.11 -4.49 6.09 30.64 0.19 -4.30 16 14 C -0.10 -4.98 5.02 30.67 0.15 -4.82 16 15 C 0.05 2.89 2.26 -11.49 -0.03 2.86 16 16 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 17 C -0.54 -30.80 8.56 25.60 0.22 -30.58 16 18 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 19 C 0.01 0.81 5.30 84.65 0.45 1.26 16 20 N -0.92 -54.76 11.35 21.45 0.24 -54.52 16 21 Si 0.96 44.72 29.54 68.60 2.03 46.75 16 22 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 23 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 24 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 25 C 0.09 3.79 4.38 86.33 0.38 4.17 16 26 H 0.08 1.62 8.12 -2.38 -0.02 1.60 16 27 H 0.05 1.38 6.88 -2.39 -0.02 1.37 16 28 H 0.07 1.66 5.14 -2.39 -0.01 1.64 16 29 H 0.15 2.39 5.96 -2.91 -0.02 2.37 16 30 H 0.16 1.37 8.06 -2.91 -0.02 1.34 16 31 H 0.16 1.47 8.06 -2.91 -0.02 1.44 16 32 H 0.14 2.70 8.06 -2.91 -0.02 2.67 16 33 H 0.08 2.42 6.59 -2.39 -0.02 2.41 16 34 H 0.04 1.27 6.57 -2.39 -0.02 1.25 16 35 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 37 H 0.06 3.19 6.15 -2.39 -0.01 3.17 16 38 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 39 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 40 H 0.03 1.09 6.93 -2.38 -0.02 1.07 16 41 H 0.05 2.14 8.00 -2.39 -0.02 2.12 16 Total: -1.00 -66.87 320.31 3.33 -63.54 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: 1.01 Total: 10.97 kcal Atomic # 6 Polarization: -40.67 SS G_CDS: 3.30 Total: -37.37 kcal Atomic # 7 Polarization: -75.32 SS G_CDS: -3.77 Total: -79.09 kcal Atomic # 9 Polarization: -5.57 SS G_CDS: 0.75 Total: -4.81 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -66.87 3.33 -63.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595610785.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.707 kcal (2) G-P(sol) polarization free energy of solvation -66.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds