Wall clock time and date at job start Mon Mar 30 2020 02:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.46773 * 2 1 4 4 C 1.50698 * 109.47223 * 239.99950 * 2 1 3 5 5 C 1.38271 * 119.98491 * 105.23900 * 4 2 1 6 6 C 1.38221 * 120.04676 * 179.76425 * 5 4 2 7 7 C 1.38219 * 120.02888 * 0.51729 * 6 5 4 8 8 C 1.38432 * 119.97509 * 359.73983 * 7 6 5 9 9 F 1.35097 * 120.02766 * 179.97438 * 8 7 6 10 10 C 1.38173 * 119.98781 * 285.52062 * 4 2 1 11 11 N 1.46897 * 109.46879 * 120.00198 * 2 1 3 12 12 C 1.46850 * 111.00061 * 295.75922 * 11 2 1 13 13 C 1.53032 * 109.52731 * 174.16266 * 12 11 2 14 14 C 1.53117 * 109.30968 * 59.15800 * 13 12 11 15 15 C 1.53128 * 109.15820 * 302.40673 * 14 13 12 16 16 H 1.08996 * 109.50559 * 297.63186 * 15 14 13 17 17 C 1.50706 * 109.50321 * 177.55500 * 15 14 13 18 18 H 1.07996 * 120.00076 * 245.82887 * 17 15 14 19 19 C 1.37877 * 119.99678 * 65.82795 * 17 15 14 20 20 N 1.31509 * 120.00572 * 355.20638 * 19 17 15 21 21 Si 1.86810 * 119.99682 * 175.21022 * 19 17 15 22 22 H 1.48495 * 109.46952 * 94.99867 * 21 19 17 23 23 H 1.48503 * 109.46794 * 214.99694 * 21 19 17 24 24 H 1.48499 * 109.47033 * 334.99573 * 21 19 17 25 25 C 1.46848 * 110.99925 * 171.54949 * 11 2 1 26 26 H 1.08999 * 109.47569 * 299.99972 * 1 2 3 27 27 H 1.09007 * 109.47051 * 59.99960 * 1 2 3 28 28 H 1.09005 * 109.47293 * 179.97438 * 1 2 3 29 29 H 1.08001 * 119.97537 * 0.02616 * 5 4 2 30 30 H 1.08005 * 119.98428 * 180.25624 * 6 5 4 31 31 H 1.07998 * 120.01425 * 179.76736 * 7 6 5 32 32 H 1.08000 * 120.01668 * 359.95749 * 10 4 2 33 33 H 1.09006 * 109.46316 * 54.14204 * 12 11 2 34 34 H 1.09000 * 109.46490 * 294.18167 * 12 11 2 35 35 H 1.08993 * 109.50697 * 179.12139 * 13 12 11 36 36 H 1.08998 * 109.50340 * 299.20308 * 13 12 11 37 37 H 1.09001 * 109.52327 * 62.27385 * 14 13 12 38 38 H 1.08997 * 109.52434 * 182.46342 * 14 13 12 39 39 H 0.96998 * 120.00488 * 179.97438 * 20 19 17 40 40 H 1.08992 * 109.46021 * 305.85531 * 25 11 2 41 41 H 1.09000 * 109.45896 * 65.82414 * 25 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 6 2.5596 0.0170 -2.2816 6 6 3.0252 -0.6336 -3.4087 7 6 2.9545 -2.0115 -3.4908 8 6 2.4220 -2.7405 -2.4413 9 9 2.3520 -4.0873 -2.5206 10 6 1.9607 -2.0880 -1.3102 11 7 2.0197 -0.6925 1.1994 12 6 1.6333 0.0293 2.4185 13 6 2.0313 -0.7917 3.6470 14 6 3.5440 -1.0285 3.6294 15 6 3.9265 -1.7376 2.3272 16 1 3.4388 -2.7116 2.2863 17 6 5.4214 -1.9209 2.2745 18 1 6.0030 -1.4026 1.5265 19 6 6.0466 -2.7504 3.1812 20 7 5.3531 -3.3074 4.1499 21 14 7.8789 -3.0830 3.0337 22 1 8.6242 -2.1470 3.9131 23 1 8.1628 -4.4813 3.4456 24 1 8.3061 -2.8854 1.6253 25 6 3.4736 -0.8891 1.1369 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 2.6114 1.0940 -2.2200 30 1 3.4405 -0.0646 -4.2274 31 1 3.3149 -2.5193 -4.3731 32 1 1.5454 -2.6557 -0.4907 33 1 0.5547 0.1870 2.4208 34 1 2.1410 0.9935 2.4460 35 1 1.7585 -0.2486 4.5517 36 1 1.5128 -1.7503 3.6277 37 1 4.0631 -0.0719 3.6887 38 1 3.8253 -1.6500 4.4795 39 1 5.7929 -3.8913 4.7875 40 1 3.7315 -1.3985 0.2086 41 1 3.9727 0.0793 1.1705 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595613348.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:11 Heat of formation + Delta-G solvation = -28.770783 kcal Electronic energy + Delta-G solvation = -22124.373721 eV Core-core repulsion = 18917.880574 eV Total energy + Delta-G solvation = -3206.493147 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.64652 -39.66363 -37.77417 -34.57763 -32.53085 -30.52557 -30.23967 -30.06622 -28.63764 -24.97893 -24.01507 -22.79247 -22.37090 -21.14835 -20.04698 -18.60125 -17.16469 -16.55232 -16.05349 -15.94239 -15.41942 -15.10300 -14.59881 -14.31108 -13.90527 -13.74607 -13.35160 -12.93281 -12.77640 -12.66396 -12.50447 -12.22630 -11.92340 -11.78537 -11.60617 -11.39500 -11.12948 -10.93836 -10.78117 -10.63186 -10.51222 -10.04696 -9.82703 -9.45364 -9.00553 -8.77708 -8.63152 -8.51829 -8.26487 -7.69543 -5.95862 -4.00495 1.29527 1.38985 3.32097 3.39446 3.43376 3.71527 4.33135 4.41822 4.51102 4.75527 4.94625 5.16960 5.29067 5.35133 5.38186 5.44155 5.58172 5.64765 5.77543 5.80802 5.92210 6.03146 6.10115 6.17348 6.21564 6.32090 6.36146 6.38962 6.44405 6.55012 6.65948 6.71729 6.77048 6.99051 7.06538 7.22568 7.40789 7.65451 7.77586 7.81256 8.09529 8.17182 8.51112 9.03982 9.63622 11.11174 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014430 B = 0.006452 C = 0.005055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.914028 B = 4338.416299 C = 5537.713691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.116 3.884 3 H 0.044 0.956 4 C -0.040 4.040 5 C -0.130 4.130 6 C -0.095 4.095 7 C -0.161 4.161 8 C 0.095 3.905 9 F -0.142 7.142 10 C -0.119 4.119 11 N -0.531 5.531 12 C 0.062 3.938 13 C -0.117 4.117 14 C -0.109 4.109 15 C 0.056 3.944 16 H 0.036 0.964 17 C -0.514 4.514 18 H 0.052 0.948 19 C 0.064 3.936 20 N -0.888 5.888 21 Si 0.887 3.113 22 H -0.283 1.283 23 H -0.286 1.286 24 H -0.274 1.274 25 C 0.066 3.934 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.124 0.876 30 H 0.128 0.872 31 H 0.130 0.870 32 H 0.144 0.856 33 H 0.062 0.938 34 H 0.023 0.977 35 H 0.046 0.954 36 H 0.061 0.939 37 H 0.029 0.971 38 H 0.085 0.915 39 H 0.259 0.741 40 H 0.064 0.936 41 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.039 6.818 -10.911 15.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.008 3.992 3 H 0.062 0.938 4 C -0.041 4.041 5 C -0.149 4.149 6 C -0.113 4.113 7 C -0.180 4.180 8 C 0.076 3.924 9 F -0.120 7.120 10 C -0.138 4.138 11 N -0.256 5.256 12 C -0.066 4.066 13 C -0.155 4.155 14 C -0.147 4.147 15 C 0.038 3.962 16 H 0.054 0.946 17 C -0.552 4.552 18 H 0.070 0.930 19 C -0.137 4.137 20 N -0.526 5.526 21 Si 0.715 3.285 22 H -0.209 1.209 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.061 4.061 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.142 0.858 30 H 0.146 0.854 31 H 0.148 0.852 32 H 0.162 0.838 33 H 0.080 0.920 34 H 0.041 0.959 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.048 0.952 38 H 0.103 0.897 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -9.243 6.183 -10.736 15.457 hybrid contribution 1.553 0.355 -0.053 1.594 sum -7.690 6.538 -10.789 14.774 Atomic orbital electron populations 1.21857 0.93756 1.02767 1.01289 1.20550 0.95438 0.94784 0.88468 0.93770 1.19626 0.96541 0.92954 0.94954 1.21060 1.00094 1.00024 0.93738 1.20863 0.99002 0.93381 0.98082 1.21073 1.03198 0.94865 0.98871 1.17750 1.01636 0.77007 0.95998 1.91491 1.94365 1.29565 1.96593 1.21092 1.00928 0.94889 0.96918 1.62112 1.15766 1.47698 1.00045 1.22073 0.98884 0.94932 0.90699 1.21667 0.99980 0.99272 0.94556 1.21656 0.90612 0.99374 1.03051 1.18654 0.94917 0.94178 0.88485 0.94611 1.21129 0.92215 1.26858 1.15046 0.92977 1.24920 0.97799 0.95812 0.95194 1.69911 1.35591 1.31827 1.15311 0.86661 0.85971 0.77562 0.78302 1.20881 1.21166 1.19922 1.22376 0.83495 0.98587 1.01649 0.92118 0.92627 0.91615 0.85843 0.85408 0.85245 0.83774 0.91951 0.95904 0.93529 0.92051 0.95182 0.89672 0.93101 0.91785 0.96573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.02 37.16 0.34 -1.34 16 2 C 0.12 1.69 2.28 -68.86 -0.16 1.53 16 3 H 0.04 0.63 7.94 -51.93 -0.41 0.22 16 4 C -0.04 -0.59 3.49 -104.63 -0.37 -0.95 16 5 C -0.13 -1.66 9.67 -39.58 -0.38 -2.04 16 6 C -0.10 -1.12 10.04 -39.59 -0.40 -1.52 16 7 C -0.16 -2.10 10.03 -39.52 -0.40 -2.49 16 8 C 0.10 1.47 7.30 -39.42 -0.29 1.18 16 9 F -0.14 -2.31 17.27 2.25 0.04 -2.27 16 10 C -0.12 -1.90 8.02 -39.51 -0.32 -2.21 16 11 N -0.53 -9.44 4.06 -228.09 -0.93 -10.36 16 12 C 0.06 1.05 5.28 -3.83 -0.02 1.02 16 13 C -0.12 -2.24 6.09 -26.65 -0.16 -2.40 16 14 C -0.11 -2.56 5.09 -26.60 -0.14 -2.69 16 15 C 0.06 1.42 2.20 -91.69 -0.20 1.21 16 16 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 17 C -0.51 -14.25 8.49 -34.44 -0.29 -14.55 16 18 H 0.05 1.44 7.75 -52.49 -0.41 1.03 16 19 C 0.06 1.80 5.36 -17.82 -0.10 1.70 16 20 N -0.89 -25.60 11.61 55.43 0.64 -24.95 16 21 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 25 C 0.07 1.39 4.27 -3.84 -0.02 1.38 16 26 H 0.06 0.69 6.38 -51.93 -0.33 0.36 16 27 H 0.05 0.58 8.14 -51.92 -0.42 0.15 16 28 H 0.06 0.83 8.09 -51.93 -0.42 0.41 16 29 H 0.12 1.32 8.00 -52.49 -0.42 0.90 16 30 H 0.13 1.13 8.06 -52.48 -0.42 0.70 16 31 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.14 2.44 7.89 -52.49 -0.41 2.03 16 33 H 0.06 0.90 6.15 -51.93 -0.32 0.59 16 34 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.08 2.25 6.43 -51.93 -0.33 1.91 16 39 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 40 H 0.06 1.40 5.83 -51.93 -0.30 1.10 16 41 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 326.30 15.07 4.92 4.92 Total: -1.00 -28.78 326.30 -9.54 -38.32 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -6.30 Total: -0.03 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: -2.89 Total: -22.17 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: -0.28 Total: -35.32 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.78 -9.54 -38.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595613348.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.551 kcal (2) G-P(sol) polarization free energy of solvation -28.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds