Wall clock time and date at job start Mon Mar 30 2020 02:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.46773 * 2 1 4 4 C 1.50698 * 109.47223 * 239.99950 * 2 1 3 5 5 C 1.38271 * 119.98491 * 105.23900 * 4 2 1 6 6 C 1.38221 * 120.04676 * 179.76425 * 5 4 2 7 7 C 1.38219 * 120.02888 * 0.51729 * 6 5 4 8 8 C 1.38432 * 119.97509 * 359.73983 * 7 6 5 9 9 F 1.35097 * 120.02766 * 179.97438 * 8 7 6 10 10 C 1.38173 * 119.98781 * 285.52062 * 4 2 1 11 11 N 1.46897 * 109.46879 * 120.00198 * 2 1 3 12 12 C 1.46850 * 111.00061 * 295.75922 * 11 2 1 13 13 C 1.53032 * 109.52731 * 174.16266 * 12 11 2 14 14 C 1.53117 * 109.30968 * 59.15800 * 13 12 11 15 15 C 1.53128 * 109.15820 * 302.40673 * 14 13 12 16 16 H 1.08996 * 109.50559 * 297.63186 * 15 14 13 17 17 C 1.50706 * 109.50321 * 177.55500 * 15 14 13 18 18 H 1.07996 * 120.00076 * 245.82887 * 17 15 14 19 19 C 1.37877 * 119.99678 * 65.82795 * 17 15 14 20 20 N 1.31509 * 120.00572 * 355.20638 * 19 17 15 21 21 Si 1.86810 * 119.99682 * 175.21022 * 19 17 15 22 22 H 1.48495 * 109.46952 * 94.99867 * 21 19 17 23 23 H 1.48503 * 109.46794 * 214.99694 * 21 19 17 24 24 H 1.48499 * 109.47033 * 334.99573 * 21 19 17 25 25 C 1.46848 * 110.99925 * 171.54949 * 11 2 1 26 26 H 1.08999 * 109.47569 * 299.99972 * 1 2 3 27 27 H 1.09007 * 109.47051 * 59.99960 * 1 2 3 28 28 H 1.09005 * 109.47293 * 179.97438 * 1 2 3 29 29 H 1.08001 * 119.97537 * 0.02616 * 5 4 2 30 30 H 1.08005 * 119.98428 * 180.25624 * 6 5 4 31 31 H 1.07998 * 120.01425 * 179.76736 * 7 6 5 32 32 H 1.08000 * 120.01668 * 359.95749 * 10 4 2 33 33 H 1.09006 * 109.46316 * 54.14204 * 12 11 2 34 34 H 1.09000 * 109.46490 * 294.18167 * 12 11 2 35 35 H 1.08993 * 109.50697 * 179.12139 * 13 12 11 36 36 H 1.08998 * 109.50340 * 299.20308 * 13 12 11 37 37 H 1.09001 * 109.52327 * 62.27385 * 14 13 12 38 38 H 1.08997 * 109.52434 * 182.46342 * 14 13 12 39 39 H 0.96998 * 120.00488 * 179.97438 * 20 19 17 40 40 H 1.08992 * 109.46021 * 305.85531 * 25 11 2 41 41 H 1.09000 * 109.45896 * 65.82414 * 25 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 6 2.5596 0.0170 -2.2816 6 6 3.0252 -0.6336 -3.4087 7 6 2.9545 -2.0115 -3.4908 8 6 2.4220 -2.7405 -2.4413 9 9 2.3520 -4.0873 -2.5206 10 6 1.9607 -2.0880 -1.3102 11 7 2.0197 -0.6925 1.1994 12 6 1.6333 0.0293 2.4185 13 6 2.0313 -0.7917 3.6470 14 6 3.5440 -1.0285 3.6294 15 6 3.9265 -1.7376 2.3272 16 1 3.4388 -2.7116 2.2863 17 6 5.4214 -1.9209 2.2745 18 1 6.0030 -1.4026 1.5265 19 6 6.0466 -2.7504 3.1812 20 7 5.3531 -3.3074 4.1499 21 14 7.8789 -3.0830 3.0337 22 1 8.6242 -2.1470 3.9131 23 1 8.1628 -4.4813 3.4456 24 1 8.3061 -2.8854 1.6253 25 6 3.4736 -0.8891 1.1369 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 2.6114 1.0940 -2.2200 30 1 3.4405 -0.0646 -4.2274 31 1 3.3149 -2.5193 -4.3731 32 1 1.5454 -2.6557 -0.4907 33 1 0.5547 0.1870 2.4208 34 1 2.1410 0.9935 2.4460 35 1 1.7585 -0.2486 4.5517 36 1 1.5128 -1.7503 3.6277 37 1 4.0631 -0.0719 3.6887 38 1 3.8253 -1.6500 4.4795 39 1 5.7929 -3.8913 4.7875 40 1 3.7315 -1.3985 0.2086 41 1 3.9727 0.0793 1.1705 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595613348.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:11 Heat of formation + Delta-G solvation = -43.763215 kcal Electronic energy + Delta-G solvation = -22125.023842 eV Core-core repulsion = 18917.880574 eV Total energy + Delta-G solvation = -3207.143268 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.85925 -40.88511 -39.14583 -36.15306 -34.32513 -31.96353 -31.62674 -31.40286 -29.89860 -26.89101 -25.35659 -24.14310 -23.61133 -22.72604 -21.30217 -20.33106 -18.56436 -18.17436 -17.42504 -17.04943 -16.76650 -16.55260 -16.30258 -15.66987 -15.31799 -14.98712 -14.73366 -14.46677 -14.27088 -14.15099 -13.93615 -13.60173 -13.31347 -12.98252 -12.89307 -12.74753 -12.71305 -12.51591 -12.45893 -12.26580 -11.82954 -11.72852 -11.56974 -11.34115 -10.82453 -10.71337 -10.36868 -9.77871 -9.59515 -9.11456 -8.10655 -6.23156 0.22869 0.33198 1.37388 1.39057 1.49487 2.40682 2.65139 3.07830 3.17573 3.32949 3.67318 3.93208 4.13485 4.20231 4.26196 4.30649 4.32086 4.37740 4.53966 4.55860 4.63093 4.72794 4.83850 4.89981 4.95133 4.99761 5.07698 5.10016 5.15865 5.21141 5.25113 5.36641 5.40060 5.41858 5.51800 5.58509 5.62164 5.96516 6.00262 6.13076 6.20016 6.40317 6.46918 6.90117 7.44335 8.95165 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014430 B = 0.006452 C = 0.005055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.914028 B = 4338.416299 C = 5537.713691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.116 3.884 3 H 0.058 0.942 4 C -0.053 4.053 5 C -0.128 4.128 6 C -0.086 4.086 7 C -0.160 4.160 8 C 0.067 3.933 9 F -0.156 7.156 10 C -0.139 4.139 11 N -0.541 5.541 12 C 0.065 3.935 13 C -0.111 4.111 14 C -0.102 4.102 15 C 0.055 3.945 16 H -0.007 1.007 17 C -0.535 4.535 18 H 0.047 0.953 19 C 0.015 3.985 20 N -0.915 5.915 21 Si 0.950 3.050 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.270 1.270 25 C 0.087 3.913 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.053 0.947 29 H 0.151 0.849 30 H 0.167 0.833 31 H 0.151 0.849 32 H 0.119 0.881 33 H 0.097 0.903 34 H 0.029 0.971 35 H 0.071 0.929 36 H 0.048 0.952 37 H 0.024 0.976 38 H 0.049 0.951 39 H 0.260 0.740 40 H 0.052 0.948 41 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.228 9.178 -12.548 18.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.008 3.992 3 H 0.076 0.924 4 C -0.054 4.054 5 C -0.146 4.146 6 C -0.104 4.104 7 C -0.179 4.179 8 C 0.048 3.952 9 F -0.135 7.135 10 C -0.159 4.159 11 N -0.267 5.267 12 C -0.062 4.062 13 C -0.148 4.148 14 C -0.140 4.140 15 C 0.036 3.964 16 H 0.012 0.988 17 C -0.574 4.574 18 H 0.066 0.934 19 C -0.184 4.184 20 N -0.555 5.555 21 Si 0.775 3.225 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.194 1.194 25 C -0.040 4.040 26 H 0.090 0.910 27 H 0.096 0.904 28 H 0.072 0.928 29 H 0.169 0.831 30 H 0.185 0.815 31 H 0.169 0.831 32 H 0.137 0.863 33 H 0.115 0.885 34 H 0.047 0.953 35 H 0.090 0.910 36 H 0.067 0.933 37 H 0.043 0.957 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -9.447 8.553 -12.380 17.767 hybrid contribution 1.598 -0.381 0.426 1.697 sum -7.849 8.172 -11.954 16.471 Atomic orbital electron populations 1.21826 0.91652 1.02546 1.02978 1.20690 0.97019 0.94780 0.86710 0.92428 1.19752 0.97362 0.92389 0.95887 1.21427 0.98677 1.01389 0.93137 1.21328 0.97479 0.92896 0.98696 1.21406 1.02144 0.95655 0.98650 1.18087 1.03317 0.76707 0.97118 1.91445 1.94661 1.30638 1.96724 1.20995 1.02369 0.95756 0.96740 1.62009 1.13188 1.49455 1.02003 1.22090 1.00951 0.94216 0.88955 1.21581 0.96286 0.99653 0.97314 1.21453 0.93978 0.97899 1.00663 1.18559 0.93469 0.93135 0.91230 0.98829 1.21501 0.93842 1.27124 1.14905 0.93426 1.25703 1.02183 0.95672 0.94865 1.70051 1.37273 1.32251 1.15882 0.85673 0.80808 0.77517 0.78476 1.19943 1.20823 1.19415 1.21916 0.85971 0.97103 0.99058 0.90953 0.90354 0.92814 0.83096 0.81547 0.83080 0.86290 0.88524 0.95253 0.91015 0.93322 0.95700 0.93205 0.93088 0.92912 0.97097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 9.02 71.98 0.65 -2.20 16 2 C 0.12 3.13 2.28 44.17 0.10 3.23 16 3 H 0.06 1.44 7.94 -2.39 -0.02 1.42 16 4 C -0.05 -1.49 3.49 -19.87 -0.07 -1.56 16 5 C -0.13 -2.85 9.67 22.27 0.22 -2.64 16 6 C -0.09 -1.73 10.04 22.26 0.22 -1.51 16 7 C -0.16 -3.87 10.03 22.31 0.22 -3.65 16 8 C 0.07 2.08 7.30 22.38 0.16 2.25 16 9 F -0.16 -5.32 17.27 44.97 0.78 -4.54 16 10 C -0.14 -4.54 8.02 22.31 0.18 -4.36 16 11 N -0.54 -18.92 4.06 -875.53 -3.55 -22.48 16 12 C 0.07 2.08 5.28 86.32 0.46 2.53 16 13 C -0.11 -4.19 6.09 30.64 0.19 -4.01 16 14 C -0.10 -4.92 5.09 30.68 0.16 -4.77 16 15 C 0.05 2.87 2.20 -11.48 -0.03 2.85 16 16 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 17 C -0.54 -30.65 8.49 25.60 0.22 -30.43 16 18 H 0.05 2.69 7.75 -2.91 -0.02 2.67 16 19 C 0.01 0.84 5.36 84.66 0.45 1.29 16 20 N -0.92 -54.67 11.61 21.45 0.25 -54.42 16 21 Si 0.95 44.96 29.54 68.60 2.03 46.99 16 22 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 23 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 24 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 25 C 0.09 3.75 4.27 86.32 0.37 4.12 16 26 H 0.07 1.38 6.38 -2.39 -0.02 1.36 16 27 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 28 H 0.05 1.29 8.09 -2.38 -0.02 1.27 16 29 H 0.15 2.52 8.00 -2.91 -0.02 2.50 16 30 H 0.17 2.07 8.06 -2.91 -0.02 2.04 16 31 H 0.15 2.92 8.06 -2.91 -0.02 2.89 16 32 H 0.12 4.35 7.89 -2.91 -0.02 4.33 16 33 H 0.10 2.47 6.15 -2.38 -0.01 2.46 16 34 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.05 2.74 6.43 -2.39 -0.02 2.73 16 39 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 40 H 0.05 2.37 5.83 -2.39 -0.01 2.35 16 41 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 Total: -1.00 -65.60 326.30 4.00 -61.60 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: 1.00 Total: 11.70 kcal Atomic # 6 Polarization: -42.35 SS G_CDS: 3.50 Total: -38.85 kcal Atomic # 7 Polarization: -73.59 SS G_CDS: -3.30 Total: -76.90 kcal Atomic # 9 Polarization: -5.32 SS G_CDS: 0.78 Total: -4.54 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -65.60 4.00 -61.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595613348.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.833 kcal (2) G-P(sol) polarization free energy of solvation -65.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds