Wall clock time and date at job start Mon Mar 30 2020 02:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47528 * 2 1 4 4 C 1.50701 * 109.47258 * 120.00652 * 2 1 3 5 5 C 1.38270 * 119.98720 * 253.71823 * 4 2 1 6 6 C 1.38215 * 120.05557 * 180.02562 * 5 4 2 7 7 C 1.38222 * 120.02328 * 359.95542 * 6 5 4 8 8 C 1.38440 * 119.97469 * 0.02562 * 7 6 5 9 9 F 1.35099 * 120.02577 * 179.97438 * 8 7 6 10 10 C 1.38173 * 119.98869 * 73.45124 * 4 2 1 11 11 N 1.46909 * 109.46879 * 240.00372 * 2 1 3 12 12 C 1.46851 * 110.99576 * 177.28182 * 11 2 1 13 13 C 1.53040 * 109.52011 * 174.16060 * 12 11 2 14 14 C 1.53127 * 109.31065 * 59.15755 * 13 12 11 15 15 C 1.53128 * 109.15980 * 302.40830 * 14 13 12 16 16 H 1.09004 * 109.49472 * 297.63441 * 15 14 13 17 17 C 1.50696 * 109.50372 * 177.55712 * 15 14 13 18 18 H 1.08000 * 119.99394 * 240.15543 * 17 15 14 19 19 C 1.37874 * 120.00447 * 60.15016 * 17 15 14 20 20 N 1.31520 * 119.99590 * 0.02562 * 19 17 15 21 21 Si 1.86799 * 120.00357 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46730 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47138 * 119.99982 * 21 19 17 24 24 H 1.48494 * 109.47357 * 240.00659 * 21 19 17 25 25 C 1.46843 * 110.99984 * 53.07330 * 11 2 1 26 26 H 1.09001 * 109.46857 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46573 * 299.99257 * 1 2 3 28 28 H 1.08991 * 109.47179 * 59.99762 * 1 2 3 29 29 H 1.08007 * 119.96665 * 0.02562 * 5 4 2 30 30 H 1.08002 * 119.99017 * 179.97438 * 6 5 4 31 31 H 1.07997 * 120.01297 * 180.02562 * 7 6 5 32 32 H 1.08004 * 120.01526 * 359.96958 * 10 4 2 33 33 H 1.08991 * 109.46517 * 54.14665 * 12 11 2 34 34 H 1.09000 * 109.45296 * 294.16655 * 12 11 2 35 35 H 1.08994 * 109.50373 * 179.11626 * 13 12 11 36 36 H 1.08999 * 109.50288 * 299.19979 * 13 12 11 37 37 H 1.09000 * 109.52103 * 62.26814 * 14 13 12 38 38 H 1.08999 * 109.52422 * 182.45814 * 14 13 12 39 39 H 0.96999 * 119.99540 * 179.97438 * 20 19 17 40 40 H 1.08999 * 109.46358 * 305.85648 * 25 11 2 41 41 H 1.09000 * 109.46320 * 65.81689 * 25 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 2.5793 0.0151 2.2726 6 6 3.0410 -0.6352 3.4015 7 6 2.9556 -2.0119 3.4901 8 6 2.4078 -2.7395 2.4475 9 9 2.3242 -4.0852 2.5328 10 6 1.9412 -2.0864 1.3189 11 7 2.0197 -0.6925 -1.1996 12 6 3.4862 -0.6560 -1.2664 13 6 3.9657 -1.5072 -2.4443 14 6 3.3632 -0.9614 -3.7420 15 6 1.8362 -0.9640 -3.6271 16 1 1.4825 -1.9876 -3.5030 17 6 1.2367 -0.3725 -4.8767 18 1 0.6192 0.5113 -4.8131 19 6 1.4765 -0.9593 -6.1010 20 7 2.2282 -2.0358 -6.1783 21 14 0.7327 -0.2264 -7.6499 22 1 -0.0670 0.9735 -7.2950 23 1 1.8191 0.1621 -8.5847 24 1 -0.1449 -1.2318 -8.3012 25 6 1.4185 -0.1286 -2.4149 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5137 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 2.6458 1.0909 2.2044 30 1 3.4684 -0.0674 4.2147 31 1 3.3160 -2.5198 4.3724 32 1 1.5096 -2.6527 0.5068 33 1 3.9020 -1.0513 -0.3397 34 1 3.8178 0.3733 -1.4034 35 1 5.0534 -1.4673 -2.5032 36 1 3.6466 -2.5396 -2.3010 37 1 3.7138 0.0576 -3.9060 38 1 3.6673 -1.5912 -4.5780 39 1 2.3966 -2.4489 -7.0396 40 1 0.3325 -0.1409 -2.3222 41 1 1.7600 0.8981 -2.5463 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595613350.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:17 Heat of formation + Delta-G solvation = -28.279369 kcal Electronic energy + Delta-G solvation = -21844.790337 eV Core-core repulsion = 18638.318499 eV Total energy + Delta-G solvation = -3206.471838 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.80879 -39.68520 -37.87778 -34.59530 -32.55487 -30.77205 -30.44726 -29.81352 -28.57524 -25.04817 -24.19045 -22.88928 -22.22465 -21.21641 -20.10329 -18.60965 -17.26484 -16.60038 -16.16595 -16.01395 -15.54921 -15.22530 -14.57370 -14.20483 -14.13922 -13.81473 -13.28168 -13.12986 -12.72211 -12.71818 -12.50642 -12.26275 -12.12498 -11.88761 -11.59165 -11.23008 -11.09205 -10.96850 -10.80618 -10.64131 -10.52784 -10.08237 -9.82512 -9.44855 -9.05674 -8.86739 -8.69428 -8.62331 -8.30035 -7.69947 -5.96916 -4.03104 1.15597 1.25332 3.30068 3.38326 3.41476 3.58925 4.26018 4.32909 4.49698 4.67099 4.84843 5.05221 5.18882 5.33298 5.36309 5.42658 5.50384 5.66853 5.78737 5.83400 5.92688 6.00229 6.08043 6.10143 6.21174 6.25675 6.31098 6.33651 6.40766 6.52758 6.60464 6.73664 6.77431 6.92788 6.99077 7.22795 7.40982 7.66035 7.75461 7.81030 8.09048 8.18426 8.48663 9.01295 9.61357 11.09089 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029366 B = 0.004233 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.251804 B = 6612.879924 C = 6870.931078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.116 3.884 3 H 0.045 0.955 4 C -0.038 4.038 5 C -0.131 4.131 6 C -0.096 4.096 7 C -0.163 4.163 8 C 0.092 3.908 9 F -0.143 7.143 10 C -0.121 4.121 11 N -0.530 5.530 12 C 0.064 3.936 13 C -0.116 4.116 14 C -0.110 4.110 15 C 0.055 3.945 16 H 0.034 0.966 17 C -0.514 4.514 18 H 0.053 0.947 19 C 0.063 3.937 20 N -0.888 5.888 21 Si 0.889 3.111 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.284 1.284 25 C 0.064 3.936 26 H 0.066 0.934 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.125 0.875 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.145 0.855 33 H 0.057 0.943 34 H 0.022 0.978 35 H 0.045 0.955 36 H 0.060 0.940 37 H 0.029 0.971 38 H 0.090 0.910 39 H 0.259 0.741 40 H 0.067 0.933 41 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.262 2.953 17.282 17.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.007 3.993 3 H 0.063 0.937 4 C -0.038 4.038 5 C -0.150 4.150 6 C -0.114 4.114 7 C -0.182 4.182 8 C 0.073 3.927 9 F -0.121 7.121 10 C -0.140 4.140 11 N -0.255 5.255 12 C -0.064 4.064 13 C -0.154 4.154 14 C -0.148 4.148 15 C 0.037 3.963 16 H 0.052 0.948 17 C -0.553 4.553 18 H 0.072 0.928 19 C -0.138 4.138 20 N -0.527 5.527 21 Si 0.717 3.283 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.063 4.063 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.142 0.858 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.163 0.837 33 H 0.076 0.924 34 H 0.040 0.960 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.048 0.952 38 H 0.108 0.892 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 1.176 2.292 17.171 17.363 hybrid contribution 0.003 0.974 -0.897 1.324 sum 1.179 3.265 16.274 16.640 Atomic orbital electron populations 1.21929 0.93409 1.03027 1.01798 1.20550 0.95739 0.94577 0.88427 0.93732 1.19753 0.95994 0.92957 0.95140 1.21116 0.99964 1.00155 0.93754 1.20885 0.99131 0.93374 0.97995 1.21078 1.03367 0.94892 0.98866 1.17782 1.01741 0.77018 0.96140 1.91491 1.94360 1.29714 1.96552 1.21118 1.00911 0.94997 0.96992 1.62085 1.06752 1.54880 1.01804 1.22020 0.87569 0.98068 0.98741 1.21665 0.98106 0.99614 0.96041 1.21657 0.98325 0.99179 0.95679 1.18662 0.92024 0.95728 0.89927 0.94785 1.21178 1.30485 1.12054 0.91560 0.92824 1.24931 0.95159 0.94872 0.98855 1.69908 1.37983 1.20137 1.24629 0.86587 0.79026 0.79160 0.83503 1.19872 1.21133 1.21050 1.22418 0.98339 0.96344 0.89184 0.91530 0.92663 0.91277 0.85752 0.85390 0.85265 0.83717 0.92420 0.95965 0.93624 0.92141 0.95227 0.89167 0.93131 0.91480 0.96322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 8.66 37.16 0.32 -1.60 16 2 C 0.12 1.68 2.28 -68.86 -0.16 1.52 16 3 H 0.04 0.63 7.94 -51.93 -0.41 0.22 16 4 C -0.04 -0.50 3.55 -104.63 -0.37 -0.87 16 5 C -0.13 -1.47 9.67 -39.58 -0.38 -1.85 16 6 C -0.10 -0.96 10.04 -39.60 -0.40 -1.36 16 7 C -0.16 -1.81 10.03 -39.51 -0.40 -2.20 16 8 C 0.09 1.23 7.30 -39.42 -0.29 0.94 16 9 F -0.14 -2.03 17.27 2.25 0.04 -1.99 16 10 C -0.12 -1.71 8.94 -39.51 -0.35 -2.07 16 11 N -0.53 -9.39 4.03 -228.08 -0.92 -10.31 16 12 C 0.06 1.13 5.27 -3.83 -0.02 1.11 16 13 C -0.12 -2.29 6.09 -26.65 -0.16 -2.45 16 14 C -0.11 -2.60 5.03 -26.60 -0.13 -2.73 16 15 C 0.06 1.36 2.26 -91.69 -0.21 1.15 16 16 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 17 C -0.51 -13.90 8.56 -34.44 -0.29 -14.20 16 18 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 19 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 20 N -0.89 -25.24 11.36 55.43 0.63 -24.61 16 21 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 C 0.06 1.30 4.29 -3.84 -0.02 1.29 16 26 H 0.07 0.92 8.06 -51.93 -0.42 0.50 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.96 6.19 -51.93 -0.32 0.64 16 29 H 0.12 1.17 7.99 -52.48 -0.42 0.75 16 30 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 31 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.15 2.23 7.92 -52.48 -0.42 1.81 16 33 H 0.06 0.95 6.82 -51.93 -0.35 0.59 16 34 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.09 2.39 6.17 -51.93 -0.32 2.07 16 39 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.07 1.34 5.86 -51.93 -0.30 1.03 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 326.90 15.07 4.93 4.93 Total: -1.00 -27.96 326.90 -9.61 -37.57 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -6.31 Total: 0.01 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: -2.95 Total: -21.69 kcal Atomic # 7 Polarization: -34.63 SS G_CDS: -0.29 Total: -34.92 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.96 -9.61 -37.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595613350.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.289 kcal (2) G-P(sol) polarization free energy of solvation -27.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds