Wall clock time and date at job start Mon Mar 30 2020 02:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.42879 * 2 1 4 4 C 1.53387 * 109.38876 * 240.12885 * 2 1 3 5 5 C 1.50879 * 108.19707 * 189.39802 * 4 2 1 6 6 C 1.34570 * 128.32932 * 196.71843 * 5 4 2 7 7 N 1.35205 * 107.61621 * 179.81520 * 6 5 4 8 8 H 0.97004 * 126.00065 * 180.02562 * 7 6 5 9 9 N 1.40313 * 107.99372 * 0.03850 * 7 6 5 10 10 C 1.30134 * 108.12323 * 0.02890 * 9 7 6 11 11 C 1.50946 * 128.28622 * 179.90212 * 10 9 7 12 12 H 1.09006 * 109.75112 * 316.40476 * 11 10 9 13 13 C 1.50699 * 109.71955 * 77.02736 * 11 10 9 14 14 O 1.21284 * 119.99804 * 118.74971 * 13 11 10 15 15 N 1.34776 * 120.00065 * 298.75227 * 13 11 10 16 16 C 1.46498 * 119.99841 * 180.02562 * 15 13 11 17 17 C 1.52998 * 109.46963 * 180.02562 * 16 15 13 18 18 C 1.50699 * 109.47187 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00009 * 359.97438 * 18 17 16 20 20 C 1.37884 * 120.00213 * 180.02562 * 18 17 16 21 21 N 1.31518 * 119.99685 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99992 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47249 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.46834 * 119.99817 * 22 20 18 25 25 H 1.48499 * 109.47244 * 239.99589 * 22 20 18 26 26 C 1.53024 * 109.42726 * 119.89404 * 2 1 3 27 27 H 1.08994 * 109.47214 * 300.00384 * 1 2 3 28 28 H 1.09001 * 109.47248 * 60.00435 * 1 2 3 29 29 H 1.09002 * 109.47117 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.71705 * 309.07064 * 4 2 1 31 31 H 1.08996 * 109.71730 * 69.72025 * 4 2 1 32 32 H 1.07994 * 126.18969 * 359.83634 * 6 5 4 33 33 H 0.97006 * 119.99881 * 359.97438 * 15 13 11 34 34 H 1.09006 * 109.46666 * 299.99571 * 16 15 13 35 35 H 1.08999 * 109.47335 * 59.99779 * 16 15 13 36 36 H 1.08998 * 109.47291 * 299.99903 * 17 16 15 37 37 H 1.08999 * 109.47300 * 59.99727 * 17 16 15 38 38 H 0.96996 * 119.99559 * 180.02562 * 21 20 18 39 39 H 1.08993 * 109.42452 * 311.81914 * 26 2 1 40 40 H 1.09003 * 109.42527 * 71.64736 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8926 1.0279 0.0000 4 6 2.0392 -0.7206 -1.2547 5 6 3.5295 -0.9111 -1.1164 6 6 4.4257 -1.2065 -2.0759 7 7 5.6429 -1.2761 -1.4914 8 1 6.4803 -1.4730 -1.9398 9 7 5.4821 -1.0137 -0.1225 10 6 4.2188 -0.7966 0.1024 11 6 3.5442 -0.4741 1.4136 12 1 3.9390 -1.1184 2.1993 13 6 3.7887 0.9697 1.7697 14 8 2.8530 1.7330 1.8836 15 7 5.0470 1.4127 1.9614 16 6 5.2846 2.8162 2.3081 17 6 6.7874 3.0546 2.4681 18 6 7.0318 4.4984 2.8240 19 1 6.1987 5.1780 2.9256 20 6 8.3192 4.9520 3.0191 21 7 9.3338 4.1244 2.8949 22 14 8.6222 6.7418 3.4596 23 1 7.3242 7.4589 3.5377 24 1 9.3105 6.8185 4.7733 25 1 9.4729 7.3709 2.4176 26 6 2.0390 -0.7192 1.2511 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.5512 -1.6912 -1.3449 31 1 1.8258 -0.1176 -2.1372 32 1 4.2114 -1.3599 -3.1232 33 1 5.7953 0.8022 1.8706 34 1 4.8978 3.4566 1.5154 35 1 4.7775 3.0501 3.2442 36 1 7.1746 2.4141 3.2604 37 1 7.2941 2.8208 1.5318 38 1 10.2394 4.4434 3.0325 39 1 1.5132 -0.3391 2.1269 40 1 1.8543 -1.7892 1.1545 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598941766.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:37 Heat of formation + Delta-G solvation = 8.470445 kcal Electronic energy + Delta-G solvation = -21564.634749 eV Core-core repulsion = 18379.676465 eV Total energy + Delta-G solvation = -3184.958284 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.65315 -39.31807 -36.78304 -34.71315 -33.08898 -32.50914 -30.95386 -29.95621 -29.33111 -26.16891 -25.27730 -23.79099 -21.63036 -20.94849 -20.67500 -20.33800 -18.67259 -17.69371 -16.60714 -16.20193 -15.38971 -15.13133 -15.07894 -14.46433 -14.43570 -14.09124 -13.71749 -13.40196 -13.16813 -12.93694 -12.44879 -12.36346 -12.23540 -12.10058 -11.69156 -11.15075 -11.10080 -11.02463 -10.68257 -10.64800 -10.58319 -10.26341 -10.23687 -9.94329 -9.60078 -9.29553 -8.97344 -8.47676 -8.46892 -8.27141 -6.05717 -4.08391 1.82811 2.56413 2.72750 3.17995 3.30194 3.37480 3.42755 3.83223 4.38950 4.44826 4.57357 4.79197 4.91940 5.04968 5.18780 5.31117 5.32542 5.45234 5.47590 5.61776 5.65623 5.73645 5.79741 5.89328 5.91754 6.10668 6.25176 6.27169 6.40722 6.41227 6.56312 6.57388 6.80206 7.02803 7.22553 7.57912 7.60053 7.67930 7.92952 8.12093 8.32270 8.73331 8.98094 9.56085 11.05950 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022718 B = 0.004081 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.224743 B = 6860.242629 C = 7626.506068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.094 4.094 3 H 0.088 0.912 4 C -0.036 4.036 5 C -0.228 4.228 6 C 0.057 3.943 7 N -0.480 5.480 8 H 0.440 0.560 9 N -0.275 5.275 10 C 0.087 3.913 11 C -0.030 4.030 12 H 0.110 0.890 13 C 0.517 3.483 14 O -0.543 6.543 15 N -0.716 5.716 16 C 0.122 3.878 17 C 0.013 3.987 18 C -0.520 4.520 19 H 0.060 0.940 20 C 0.058 3.942 21 N -0.894 5.894 22 Si 0.896 3.104 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.284 1.284 26 C -0.088 4.088 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.175 0.825 33 H 0.401 0.599 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.022 0.978 37 H 0.021 0.979 38 H 0.261 0.739 39 H 0.081 0.919 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.008 -14.872 -9.918 22.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.113 4.113 3 H 0.106 0.894 4 C -0.075 4.075 5 C -0.240 4.240 6 C -0.088 4.088 7 N -0.188 5.188 8 H 0.284 0.716 9 N -0.097 5.097 10 C -0.082 4.082 11 C -0.053 4.053 12 H 0.128 0.872 13 C 0.301 3.699 14 O -0.421 6.421 15 N -0.365 5.365 16 C 0.000 4.000 17 C -0.025 4.025 18 C -0.558 4.558 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.533 5.533 22 Si 0.724 3.276 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.210 1.210 26 C -0.126 4.126 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.193 0.807 33 H 0.235 0.765 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.041 0.959 37 H 0.039 0.961 38 H 0.070 0.930 39 H 0.100 0.900 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.315 -14.376 -9.319 21.099 hybrid contribution 0.608 0.557 -0.562 0.997 sum -11.708 -13.819 -9.880 20.632 Atomic orbital electron populations 1.21766 0.95026 1.01207 1.01878 1.21221 0.95483 1.01172 0.93404 0.89406 1.20099 0.89059 1.00037 0.98268 1.20105 0.97522 1.14173 0.92151 1.22031 0.85420 1.02159 0.99224 1.46303 1.08648 1.57750 1.06131 0.71586 1.77043 1.17750 1.21907 0.93010 1.21828 0.90827 0.99864 0.95677 1.19943 0.97103 0.95456 0.92830 0.87199 1.20125 0.83538 0.88971 0.77310 1.90651 1.42427 1.57032 1.52026 1.46341 1.07523 1.13398 1.69280 1.21705 1.00401 0.78638 0.99243 1.19315 0.87892 0.97588 0.97682 1.21102 0.92538 0.94527 1.47662 0.92215 1.25004 0.96129 0.97901 0.95292 1.69978 0.98801 1.34830 1.49684 0.86467 0.78339 0.84807 0.78019 1.19570 1.20925 1.20989 1.21424 0.91475 1.00303 0.99411 0.92339 0.92894 0.93070 0.91398 0.91389 0.80750 0.76487 0.92762 0.92506 0.95937 0.96067 0.92960 0.90028 0.91270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.15 37.16 0.34 -1.03 16 2 C -0.09 -1.11 2.48 -90.41 -0.22 -1.34 16 3 H 0.09 1.34 6.27 -51.93 -0.33 1.01 16 4 C -0.04 -0.37 5.57 -27.60 -0.15 -0.52 16 5 C -0.23 -2.74 5.89 -104.98 -0.62 -3.36 16 6 C 0.06 0.57 11.95 -17.36 -0.21 0.36 16 7 N -0.48 -5.29 7.37 30.35 0.22 -5.07 16 8 H 0.44 3.45 8.96 -182.43 -1.64 1.82 16 9 N -0.27 -4.00 12.53 33.75 0.42 -3.58 16 10 C 0.09 1.22 6.22 -82.34 -0.51 0.71 16 11 C -0.03 -0.41 3.06 -92.61 -0.28 -0.70 16 12 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 13 C 0.52 9.23 6.78 -10.99 -0.07 9.15 16 14 O -0.54 -11.05 14.36 5.55 0.08 -10.97 16 15 N -0.72 -13.78 5.47 -60.29 -0.33 -14.11 16 16 C 0.12 2.75 5.61 -4.04 -0.02 2.73 16 17 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 18 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 19 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 21 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 22 Si 0.90 21.76 29.54 -169.99 -5.02 16.73 16 23 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 C -0.09 -1.04 4.27 -26.53 -0.11 -1.15 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.58 8.13 -51.92 -0.42 0.16 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.18 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.40 7.36 8.25 -40.82 -0.34 7.02 16 34 H 0.05 1.27 8.14 -51.93 -0.42 0.84 16 35 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.08 1.00 7.77 -51.93 -0.40 0.59 16 40 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 LS Contribution 329.41 15.07 4.96 4.96 Total: -1.00 -33.59 329.41 -8.66 -42.25 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -7.31 Total: 4.27 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -2.42 Total: -8.51 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: 1.05 Total: -48.74 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.08 Total: -10.97 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.59 -8.66 -42.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598941766.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.723 kcal (2) G-P(sol) polarization free energy of solvation -33.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds