Wall clock time and date at job start Mon Mar 30 2020 02:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.42879 * 2 1 4 4 C 1.53387 * 109.38876 * 240.12885 * 2 1 3 5 5 C 1.50879 * 108.19707 * 189.39802 * 4 2 1 6 6 C 1.34570 * 128.32932 * 196.71843 * 5 4 2 7 7 N 1.35205 * 107.61621 * 179.81520 * 6 5 4 8 8 H 0.97004 * 126.00065 * 180.02562 * 7 6 5 9 9 N 1.40313 * 107.99372 * 0.03850 * 7 6 5 10 10 C 1.30134 * 108.12323 * 0.02890 * 9 7 6 11 11 C 1.50946 * 128.28622 * 179.90212 * 10 9 7 12 12 H 1.09006 * 109.75112 * 316.40476 * 11 10 9 13 13 C 1.50699 * 109.71955 * 77.02736 * 11 10 9 14 14 O 1.21284 * 119.99804 * 118.74971 * 13 11 10 15 15 N 1.34776 * 120.00065 * 298.75227 * 13 11 10 16 16 C 1.46498 * 119.99841 * 180.02562 * 15 13 11 17 17 C 1.52998 * 109.46963 * 180.02562 * 16 15 13 18 18 C 1.50699 * 109.47187 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00009 * 359.97438 * 18 17 16 20 20 C 1.37884 * 120.00213 * 180.02562 * 18 17 16 21 21 N 1.31518 * 119.99685 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99992 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47249 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.46834 * 119.99817 * 22 20 18 25 25 H 1.48499 * 109.47244 * 239.99589 * 22 20 18 26 26 C 1.53024 * 109.42726 * 119.89404 * 2 1 3 27 27 H 1.08994 * 109.47214 * 300.00384 * 1 2 3 28 28 H 1.09001 * 109.47248 * 60.00435 * 1 2 3 29 29 H 1.09002 * 109.47117 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.71705 * 309.07064 * 4 2 1 31 31 H 1.08996 * 109.71730 * 69.72025 * 4 2 1 32 32 H 1.07994 * 126.18969 * 359.83634 * 6 5 4 33 33 H 0.97006 * 119.99881 * 359.97438 * 15 13 11 34 34 H 1.09006 * 109.46666 * 299.99571 * 16 15 13 35 35 H 1.08999 * 109.47335 * 59.99779 * 16 15 13 36 36 H 1.08998 * 109.47291 * 299.99903 * 17 16 15 37 37 H 1.08999 * 109.47300 * 59.99727 * 17 16 15 38 38 H 0.96996 * 119.99559 * 180.02562 * 21 20 18 39 39 H 1.08993 * 109.42452 * 311.81914 * 26 2 1 40 40 H 1.09003 * 109.42527 * 71.64736 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8926 1.0279 0.0000 4 6 2.0392 -0.7206 -1.2547 5 6 3.5295 -0.9111 -1.1164 6 6 4.4257 -1.2065 -2.0759 7 7 5.6429 -1.2761 -1.4914 8 1 6.4803 -1.4730 -1.9398 9 7 5.4821 -1.0137 -0.1225 10 6 4.2188 -0.7966 0.1024 11 6 3.5442 -0.4741 1.4136 12 1 3.9390 -1.1184 2.1993 13 6 3.7887 0.9697 1.7697 14 8 2.8530 1.7330 1.8836 15 7 5.0470 1.4127 1.9614 16 6 5.2846 2.8162 2.3081 17 6 6.7874 3.0546 2.4681 18 6 7.0318 4.4984 2.8240 19 1 6.1987 5.1780 2.9256 20 6 8.3192 4.9520 3.0191 21 7 9.3338 4.1244 2.8949 22 14 8.6222 6.7418 3.4596 23 1 7.3242 7.4589 3.5377 24 1 9.3105 6.8185 4.7733 25 1 9.4729 7.3709 2.4176 26 6 2.0390 -0.7192 1.2511 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.5512 -1.6912 -1.3449 31 1 1.8258 -0.1176 -2.1372 32 1 4.2114 -1.3599 -3.1232 33 1 5.7953 0.8022 1.8706 34 1 4.8978 3.4566 1.5154 35 1 4.7775 3.0501 3.2442 36 1 7.1746 2.4141 3.2604 37 1 7.2941 2.8208 1.5318 38 1 10.2394 4.4434 3.0325 39 1 1.5132 -0.3391 2.1269 40 1 1.8543 -1.7892 1.1545 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598941766.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:37 Heat of formation + Delta-G solvation = -14.669633 kcal Electronic energy + Delta-G solvation = -21565.638178 eV Core-core repulsion = 18379.676465 eV Total energy + Delta-G solvation = -3185.961714 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.59252 -40.70085 -37.84270 -36.48878 -34.88424 -33.80579 -31.81686 -31.50943 -30.67458 -27.12329 -26.89988 -25.13921 -23.10327 -22.41208 -21.70711 -21.48468 -19.89431 -18.56451 -18.53298 -17.68220 -16.77557 -16.65116 -16.47757 -15.99899 -15.68086 -15.19058 -14.94122 -14.65831 -14.35847 -14.32403 -13.98360 -13.40287 -13.29368 -13.21055 -13.04049 -12.94798 -12.59215 -12.52518 -12.29105 -11.99601 -11.74810 -11.60031 -11.54675 -11.42432 -11.16513 -10.97296 -10.64089 -10.26096 -10.00078 -9.32581 -8.26593 -6.38222 0.92967 1.39429 1.39605 1.48531 1.53769 1.75866 2.05869 2.30445 2.47146 3.07634 3.46825 3.62731 3.83307 3.96700 4.09234 4.28644 4.38164 4.44486 4.47761 4.55442 4.62475 4.76014 4.79671 4.88802 4.92392 4.97076 5.06049 5.11087 5.25214 5.28818 5.39297 5.45981 5.48293 5.51925 5.66934 5.69251 5.75065 6.12203 6.48641 6.58828 6.69418 6.75083 7.23304 7.31422 8.85802 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022718 B = 0.004081 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.224743 B = 6860.242629 C = 7626.506068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.095 4.095 3 H 0.045 0.955 4 C -0.029 4.029 5 C -0.251 4.251 6 C 0.074 3.926 7 N -0.474 5.474 8 H 0.452 0.548 9 N -0.317 5.317 10 C 0.068 3.932 11 C -0.024 4.024 12 H 0.124 0.876 13 C 0.516 3.484 14 O -0.569 6.569 15 N -0.718 5.718 16 C 0.142 3.858 17 C 0.025 3.975 18 C -0.546 4.546 19 H 0.060 0.940 20 C 0.006 3.994 21 N -0.928 5.928 22 Si 0.969 3.031 23 H -0.264 1.264 24 H -0.275 1.275 25 H -0.276 1.276 26 C -0.085 4.085 27 H 0.045 0.955 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.220 0.780 33 H 0.405 0.595 34 H 0.042 0.958 35 H 0.051 0.949 36 H 0.006 0.994 37 H 0.000 1.000 38 H 0.266 0.734 39 H 0.072 0.928 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.938 -15.617 -11.215 23.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.114 4.114 3 H 0.064 0.936 4 C -0.067 4.067 5 C -0.263 4.263 6 C -0.072 4.072 7 N -0.185 5.185 8 H 0.298 0.702 9 N -0.140 5.140 10 C -0.099 4.099 11 C -0.047 4.047 12 H 0.142 0.858 13 C 0.302 3.698 14 O -0.449 6.449 15 N -0.368 5.368 16 C 0.018 3.982 17 C -0.013 4.013 18 C -0.585 4.585 19 H 0.078 0.922 20 C -0.193 4.193 21 N -0.567 5.567 22 Si 0.793 3.207 23 H -0.188 1.188 24 H -0.200 1.200 25 H -0.202 1.202 26 C -0.123 4.123 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.110 0.890 31 H 0.096 0.904 32 H 0.237 0.763 33 H 0.240 0.760 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.024 0.976 37 H 0.018 0.982 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -13.249 -15.146 -10.620 22.753 hybrid contribution 0.924 0.749 -0.214 1.208 sum -12.325 -14.397 -10.834 21.830 Atomic orbital electron populations 1.21722 0.93402 1.02597 1.01643 1.21172 0.96846 0.98966 0.94425 0.93620 1.20101 0.87995 1.01120 0.97486 1.20462 0.98831 1.15170 0.91795 1.22718 0.84149 0.99556 1.00755 1.46383 1.09901 1.56969 1.05208 0.70163 1.76956 1.18371 1.23463 0.95191 1.21886 0.91160 1.00650 0.96239 1.19945 0.98879 0.92111 0.93763 0.85829 1.20873 0.82282 0.90707 0.75918 1.90632 1.43012 1.58388 1.52880 1.46240 1.08603 1.12033 1.69914 1.21214 0.97751 0.80640 0.98546 1.19103 0.89839 0.96542 0.95771 1.21484 0.93063 0.95657 1.48278 0.92151 1.25932 0.95721 1.02795 0.94820 1.70089 0.99378 1.37093 1.50186 0.85337 0.78472 0.78841 0.78033 1.18813 1.20013 1.20153 1.21472 0.89650 1.01949 0.99223 0.93615 0.92174 0.90781 0.88980 0.90442 0.76323 0.75971 0.93933 0.93041 0.97578 0.98187 0.92510 0.90923 0.88452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.15 71.98 0.66 -1.75 16 2 C -0.10 -2.15 2.48 -10.66 -0.03 -2.17 16 3 H 0.05 1.42 6.27 -2.39 -0.01 1.40 16 4 C -0.03 -0.51 5.57 30.03 0.17 -0.35 16 5 C -0.25 -5.52 5.89 -20.10 -0.12 -5.64 16 6 C 0.07 1.26 11.95 83.33 1.00 2.25 16 7 N -0.47 -9.69 7.37 -57.88 -0.43 -10.12 16 8 H 0.45 6.38 8.96 -213.18 -1.91 4.47 16 9 N -0.32 -9.08 12.53 -47.13 -0.59 -9.67 16 10 C 0.07 1.88 6.22 43.44 0.27 2.15 16 11 C -0.02 -0.66 3.06 -12.08 -0.04 -0.69 16 12 H 0.12 2.98 8.14 -2.38 -0.02 2.96 16 13 C 0.52 18.92 6.78 87.66 0.59 19.51 16 14 O -0.57 -23.92 14.36 -3.04 -0.04 -23.96 16 15 N -0.72 -28.64 5.47 -463.06 -2.53 -31.17 16 16 C 0.14 6.64 5.61 86.38 0.48 7.13 16 17 C 0.02 1.35 5.09 29.85 0.15 1.50 16 18 C -0.55 -31.80 9.11 25.60 0.23 -31.56 16 19 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 20 C 0.01 0.34 5.46 84.66 0.46 0.80 16 21 N -0.93 -56.17 13.29 21.45 0.28 -55.89 16 22 Si 0.97 44.67 29.54 68.60 2.03 46.69 16 23 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 24 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 25 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 26 C -0.08 -1.91 4.27 30.73 0.13 -1.78 16 27 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.09 1.20 8.13 -2.38 -0.02 1.18 16 31 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.22 1.54 8.06 -2.91 -0.02 1.51 16 33 H 0.41 15.50 8.25 -92.70 -0.77 14.73 16 34 H 0.04 2.07 8.14 -2.38 -0.02 2.05 16 35 H 0.05 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 38 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 39 H 0.07 1.75 7.77 -2.39 -0.02 1.73 16 40 H 0.10 1.65 8.10 -2.39 -0.02 1.63 16 Total: -1.00 -73.98 329.41 1.07 -72.92 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: -1.62 Total: 21.79 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: 3.97 Total: -10.60 kcal Atomic # 7 Polarization: -103.58 SS G_CDS: -3.27 Total: -106.85 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -0.04 Total: -23.96 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -73.98 1.07 -72.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598941766.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.250 kcal (2) G-P(sol) polarization free energy of solvation -73.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds