Wall clock time and date at job start Mon Mar 30 2020 02:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.39067 * 2 1 4 4 C 1.53391 * 109.42942 * 240.12107 * 2 1 3 5 5 C 1.50884 * 108.19348 * 189.38810 * 4 2 1 6 6 C 1.34575 * 128.32409 * 196.74470 * 5 4 2 7 7 N 1.35193 * 107.61746 * 179.70965 * 6 5 4 8 8 H 0.96996 * 126.00504 * 180.02562 * 7 6 5 9 9 N 1.40317 * 107.99182 * 0.04184 * 7 6 5 10 10 C 1.30129 * 108.12555 * 0.03735 * 9 7 6 11 11 C 1.50948 * 128.28903 * 179.86321 * 10 9 7 12 12 H 1.08996 * 109.71268 * 76.92713 * 11 10 9 13 13 C 1.50709 * 109.71279 * 316.32714 * 11 10 9 14 14 O 1.21283 * 119.99605 * 239.99615 * 13 11 10 15 15 N 1.34774 * 119.99694 * 60.00434 * 13 11 10 16 16 C 1.46499 * 119.99486 * 179.97438 * 15 13 11 17 17 C 1.53004 * 109.47198 * 179.97438 * 16 15 13 18 18 C 1.50700 * 109.47208 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99770 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00083 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00147 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00278 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47228 * 179.97438 * 22 20 18 24 24 H 1.48501 * 109.46793 * 300.00001 * 22 20 18 25 25 H 1.48500 * 109.47000 * 60.00094 * 22 20 18 26 26 C 1.53025 * 109.42729 * 119.87170 * 2 1 3 27 27 H 1.09002 * 109.47203 * 179.87650 * 1 2 3 28 28 H 1.08999 * 109.47090 * 299.87673 * 1 2 3 29 29 H 1.08999 * 109.46791 * 59.87537 * 1 2 3 30 30 H 1.09000 * 109.71363 * 69.71158 * 4 2 1 31 31 H 1.09003 * 109.71895 * 309.06446 * 4 2 1 32 32 H 1.08001 * 126.19046 * 359.68060 * 6 5 4 33 33 H 0.96991 * 120.00732 * 359.97438 * 15 13 11 34 34 H 1.09000 * 109.47602 * 59.99571 * 16 15 13 35 35 H 1.08998 * 109.47492 * 299.99559 * 16 15 13 36 36 H 1.08994 * 109.47074 * 60.00190 * 17 16 15 37 37 H 1.08998 * 109.47285 * 300.00026 * 17 16 15 38 38 H 0.97005 * 119.99661 * 359.97438 * 21 20 18 39 39 H 1.08997 * 109.42764 * 71.71655 * 26 2 1 40 40 H 1.09006 * 109.42497 * 311.88501 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8919 1.0281 0.0000 4 6 2.0403 -0.7206 -1.2543 5 6 3.5307 -0.9103 -1.1151 6 6 4.4276 -1.2050 -2.0742 7 7 5.6447 -1.2717 -1.4896 8 1 6.4825 -1.4675 -1.9375 9 7 5.4832 -1.0084 -0.1208 10 6 4.2195 -0.7936 0.1037 11 6 3.5439 -0.4721 1.4147 12 1 3.7202 0.5721 1.6727 13 6 4.0904 -1.3633 2.5002 14 8 3.3478 -2.1075 3.1049 15 7 5.4043 -1.3331 2.7991 16 6 5.9353 -2.1990 3.8546 17 6 7.4422 -1.9715 3.9910 18 6 7.9884 -2.8618 5.0773 19 1 7.3270 -3.5240 5.6162 20 6 9.3324 -2.8309 5.3832 21 7 10.1377 -2.0241 4.7273 22 14 10.0097 -3.9350 6.7293 23 1 11.4721 -3.7140 6.8617 24 1 9.3414 -3.6137 8.0159 25 1 9.7539 -5.3554 6.3798 26 6 2.0390 -0.7188 1.2514 27 1 -0.3634 -1.0277 -0.0022 28 1 -0.3633 0.5119 0.8911 29 1 -0.3633 0.5158 -0.8889 30 1 1.8270 -0.1178 -2.1370 31 1 1.5528 -1.6914 -1.3446 32 1 4.2136 -1.3606 -3.1213 33 1 5.9982 -0.7381 2.3153 34 1 5.7475 -3.2417 3.5982 35 1 5.4450 -1.9632 4.7991 36 1 7.6305 -0.9290 4.2474 37 1 7.9323 -2.2076 3.0465 38 1 9.7861 -1.4510 4.0281 39 1 1.8555 -1.7888 1.1548 40 1 1.5123 -0.3391 2.1270 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598941767.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:40 Heat of formation + Delta-G solvation = -21.004150 kcal Electronic energy + Delta-G solvation = -21389.187681 eV Core-core repulsion = 18202.951282 eV Total energy + Delta-G solvation = -3186.236399 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.61327 -40.73219 -38.00378 -36.80671 -35.09869 -33.84604 -31.87667 -31.29987 -30.68585 -27.00671 -26.72459 -25.18586 -23.44216 -22.64580 -21.63571 -21.31744 -19.88721 -19.01930 -18.56771 -17.82197 -17.07415 -16.90224 -16.13037 -15.67593 -15.56564 -15.33162 -15.23995 -14.78932 -14.59715 -14.10816 -14.00550 -13.72104 -13.70749 -13.19821 -12.97488 -12.87966 -12.49149 -12.32381 -12.19159 -12.07960 -11.89260 -11.65228 -11.50680 -11.46236 -11.08981 -10.76602 -10.61491 -10.39225 -10.11704 -9.35990 -8.76273 -6.47271 0.91897 1.41868 1.51640 1.60071 1.72567 1.80125 1.97960 2.24372 2.55446 3.09822 3.36880 3.55024 3.75750 3.94030 4.07859 4.23629 4.25560 4.29489 4.32890 4.44611 4.58596 4.61358 4.71469 4.82766 4.90315 4.98008 5.03518 5.05685 5.13069 5.26951 5.27248 5.29848 5.36707 5.45539 5.60351 5.64302 5.89026 6.08925 6.42817 6.45968 6.54593 6.65101 7.14459 7.33943 8.65487 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027435 B = 0.003773 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.357141 B = 7419.027317 C = 8201.135489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.084 4.084 3 H 0.080 0.920 4 C -0.031 4.031 5 C -0.248 4.248 6 C 0.077 3.923 7 N -0.476 5.476 8 H 0.451 0.549 9 N -0.325 5.325 10 C 0.065 3.935 11 C -0.020 4.020 12 H 0.131 0.869 13 C 0.513 3.487 14 O -0.582 6.582 15 N -0.711 5.711 16 C 0.148 3.852 17 C 0.011 3.989 18 C -0.624 4.624 19 H 0.051 0.949 20 C -0.033 4.033 21 N -0.931 5.931 22 Si 1.120 2.880 23 H -0.280 1.280 24 H -0.268 1.268 25 H -0.270 1.270 26 C -0.086 4.086 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.072 0.928 32 H 0.223 0.777 33 H 0.408 0.592 34 H 0.040 0.960 35 H 0.050 0.950 36 H 0.004 0.996 37 H -0.001 1.001 38 H 0.257 0.743 39 H 0.055 0.945 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.389 6.230 -18.031 25.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.103 4.103 3 H 0.098 0.902 4 C -0.069 4.069 5 C -0.259 4.259 6 C -0.069 4.069 7 N -0.186 5.186 8 H 0.297 0.703 9 N -0.148 5.148 10 C -0.103 4.103 11 C -0.043 4.043 12 H 0.148 0.852 13 C 0.299 3.701 14 O -0.463 6.463 15 N -0.361 5.361 16 C 0.024 3.976 17 C -0.027 4.027 18 C -0.662 4.662 19 H 0.069 0.931 20 C -0.231 4.231 21 N -0.568 5.568 22 Si 0.940 3.060 23 H -0.205 1.205 24 H -0.193 1.193 25 H -0.195 1.195 26 C -0.125 4.125 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.115 0.885 31 H 0.090 0.910 32 H 0.239 0.761 33 H 0.243 0.757 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.022 0.978 37 H 0.017 0.983 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.364 5.213 -16.306 23.003 hybrid contribution -0.910 0.539 -1.416 1.767 sum -16.274 5.752 -17.722 24.739 Atomic orbital electron populations 1.21791 0.93260 1.02220 1.02695 1.21159 0.96690 0.99572 0.92836 0.90168 1.20127 0.87410 1.00925 0.98441 1.20436 0.98845 1.15406 0.91236 1.22779 0.84013 0.99207 1.00942 1.46401 1.10084 1.57043 1.05074 0.70303 1.76992 1.18861 1.23687 0.95257 1.21969 0.91267 1.00875 0.96157 1.19986 0.97073 1.00374 0.86838 0.85167 1.21032 0.81822 0.83255 0.83957 1.90639 1.58619 1.42497 1.54527 1.46171 1.09033 1.42949 1.37914 1.21052 0.94588 0.92697 0.89219 1.19253 0.91068 0.96238 0.96114 1.22310 0.96726 1.25786 1.21416 0.93059 1.27472 0.94226 0.98985 1.02400 1.70919 1.38437 1.24071 1.23361 0.82903 0.75699 0.74297 0.73059 1.20477 1.19286 1.19538 1.21469 0.89731 1.01473 0.99781 0.92750 0.92395 0.90757 0.88496 0.91002 0.76052 0.75651 0.94202 0.93131 0.97821 0.98310 0.93385 0.92587 0.90375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.15 71.98 0.66 -1.04 16 2 C -0.08 -1.30 2.66 -10.65 -0.03 -1.33 16 3 H 0.08 1.16 8.10 -2.39 -0.02 1.14 16 4 C -0.03 -0.44 5.57 30.04 0.17 -0.28 16 5 C -0.25 -5.00 5.89 -20.10 -0.12 -5.11 16 6 C 0.08 1.21 11.95 83.34 1.00 2.20 16 7 N -0.48 -9.87 7.37 -57.88 -0.43 -10.30 16 8 H 0.45 6.76 8.96 -213.18 -1.91 4.85 16 9 N -0.32 -9.69 11.46 -47.14 -0.54 -10.24 16 10 C 0.07 1.78 6.38 43.44 0.28 2.05 16 11 C -0.02 -0.55 2.91 -12.08 -0.04 -0.58 16 12 H 0.13 3.03 8.14 -2.39 -0.02 3.01 16 13 C 0.51 19.40 7.14 87.66 0.63 20.03 16 14 O -0.58 -25.84 15.86 -3.04 -0.05 -25.89 16 15 N -0.71 -28.78 5.23 -463.05 -2.42 -31.20 16 16 C 0.15 7.11 5.61 86.38 0.48 7.59 16 17 C 0.01 0.58 4.40 29.85 0.13 0.71 16 18 C -0.62 -37.07 9.11 25.60 0.23 -36.83 16 19 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 20 C -0.03 -1.94 5.46 84.65 0.46 -1.48 16 21 N -0.93 -58.24 13.65 21.45 0.29 -57.94 16 22 Si 1.12 51.21 29.90 68.60 2.05 53.26 16 23 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 24 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 25 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 26 C -0.09 -1.99 3.92 30.73 0.12 -1.87 16 27 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 29 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.07 1.02 8.13 -2.39 -0.02 1.00 16 32 H 0.22 1.20 8.06 -2.91 -0.02 1.18 16 33 H 0.41 15.55 7.56 -92.72 -0.70 14.85 16 34 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.05 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.00 0.20 8.01 -2.39 -0.02 0.18 16 37 H 0.00 -0.08 8.01 -2.39 -0.02 -0.10 16 38 H 0.26 16.18 7.22 -92.70 -0.67 15.51 16 39 H 0.06 1.53 7.77 -2.39 -0.02 1.51 16 40 H 0.08 1.76 8.09 -2.38 -0.02 1.74 16 Total: -1.00 -77.93 329.60 1.42 -76.51 By element: Atomic # 1 Polarization: 23.19 SS G_CDS: -1.46 Total: 21.73 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: 3.98 Total: -15.94 kcal Atomic # 7 Polarization: -106.58 SS G_CDS: -3.10 Total: -109.67 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -0.05 Total: -25.89 kcal Atomic # 14 Polarization: 51.21 SS G_CDS: 2.05 Total: 53.26 kcal Total: -77.93 1.42 -76.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598941767.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.503 kcal (2) G-P(sol) polarization free energy of solvation -77.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds