Wall clock time and date at job start Mon Mar 30 2020 02:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.50359 * 2 1 4 4 C 1.53043 * 109.50009 * 120.07220 * 2 1 3 5 5 N 1.46849 * 109.51992 * 179.12001 * 4 2 1 6 6 C 1.46902 * 110.99573 * 174.16186 * 5 4 2 7 7 C 1.53005 * 109.47011 * 189.99897 * 6 5 4 8 8 O 1.42899 * 109.46701 * 65.00021 * 7 6 5 9 9 C 1.42901 * 113.99726 * 180.02562 * 8 7 6 10 10 C 1.50704 * 109.47026 * 180.02562 * 9 8 7 11 11 H 1.08002 * 119.99966 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00010 * 180.02562 * 10 9 8 13 13 N 1.31522 * 119.99734 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00186 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.46985 * 89.99915 * 14 12 10 16 16 H 1.48499 * 109.47248 * 210.00028 * 14 12 10 17 17 H 1.48500 * 109.47136 * 329.99763 * 14 12 10 18 18 C 1.46844 * 111.19919 * 298.26089 * 5 4 2 19 19 C 1.53034 * 109.52466 * 61.74328 * 18 5 4 20 20 H 1.09001 * 109.50261 * 180.84399 * 19 18 5 21 21 C 1.52997 * 109.50429 * 60.76027 * 19 18 5 22 22 C 1.53112 * 109.50528 * 239.87637 * 2 1 3 23 23 F 1.39900 * 109.52490 * 302.31413 * 22 2 1 24 24 F 1.39901 * 109.52356 * 62.49955 * 22 2 1 25 25 H 1.09001 * 109.46801 * 299.92608 * 1 2 3 26 26 H 1.09001 * 109.46998 * 59.92205 * 1 2 3 27 27 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46316 * 299.13993 * 4 2 1 29 29 H 1.08999 * 109.45884 * 59.10403 * 4 2 1 30 30 H 1.08997 * 109.47178 * 310.00183 * 6 5 4 31 31 H 1.09002 * 109.46976 * 70.00321 * 6 5 4 32 32 H 1.08997 * 109.47096 * 185.00193 * 7 6 5 33 33 H 1.08998 * 109.46888 * 305.00635 * 7 6 5 34 34 H 1.09004 * 109.47173 * 299.99636 * 9 8 7 35 35 H 1.08999 * 109.47340 * 60.00157 * 9 8 7 36 36 H 0.97003 * 119.99322 * 180.02562 * 13 12 10 37 37 H 1.08999 * 109.46287 * 181.76160 * 18 5 4 38 38 H 1.08999 * 109.46320 * 301.72665 * 18 5 4 39 39 H 1.09003 * 109.46765 * 60.00060 * 21 19 18 40 40 H 1.08995 * 109.47139 * 179.97438 * 21 19 18 41 41 H 1.09000 * 109.47058 * 300.00039 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0409 -0.7229 1.2485 5 7 3.5093 -0.7416 1.2383 6 6 4.0372 -1.3048 2.4881 7 6 5.5496 -1.0818 2.5493 8 8 5.8219 0.3192 2.6212 9 6 7.2134 0.6385 2.6820 10 6 7.3830 2.1341 2.7554 11 1 6.5148 2.7766 2.7552 12 6 8.6463 2.6823 2.8217 13 7 9.7035 1.8999 2.8214 14 14 8.8565 4.5362 2.9120 15 1 8.8660 4.9646 4.3338 16 1 10.1393 4.9208 2.2705 17 1 7.7311 5.1970 2.2034 18 6 4.0230 -1.4729 0.0731 19 6 3.5713 -0.7724 -1.2103 20 1 3.9402 -1.3240 -2.0751 21 6 4.1279 0.6524 -1.2376 22 6 2.0413 -0.7243 -1.2483 23 9 1.5330 -2.0275 -1.2738 24 9 1.6235 -0.0359 -2.3923 25 1 -0.3633 0.5127 0.8907 26 1 -0.3633 0.5151 -0.8893 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6905 -0.2014 2.1390 29 1 1.6647 -1.7459 1.2552 30 1 3.5627 -0.8129 3.3372 31 1 3.8259 -2.3736 2.5228 32 1 5.9544 -1.5764 3.4321 33 1 6.0145 -1.4967 1.6550 34 1 7.6532 0.1795 3.5675 35 1 7.7125 0.2592 1.7902 36 1 10.5923 2.2856 2.8685 37 1 5.1121 -1.4962 0.1102 38 1 3.6375 -2.4924 0.0854 39 1 5.2170 0.6176 -1.2070 40 1 3.8063 1.1507 -2.1521 41 1 3.7575 1.2038 -0.3734 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599515306.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:35 Heat of formation + Delta-G solvation = -155.414220 kcal Electronic energy + Delta-G solvation = -23087.257419 eV Core-core repulsion = 19444.503376 eV Total energy + Delta-G solvation = -3642.754043 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.159 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.02249 -46.98019 -39.17391 -36.61004 -34.03980 -33.51223 -32.59933 -29.14059 -26.94245 -26.80206 -26.20557 -23.78469 -22.43926 -22.26445 -20.75231 -19.32509 -17.42391 -16.79510 -16.53433 -16.34893 -15.89699 -15.54043 -15.14481 -14.68336 -14.36853 -13.96859 -13.83574 -13.41044 -13.36111 -13.20975 -13.01882 -12.92220 -12.51342 -12.37812 -12.12733 -12.05337 -11.66038 -11.50879 -11.40143 -11.20063 -11.04826 -10.83549 -10.78924 -10.67194 -10.40270 -10.11716 -9.94962 -9.06820 -8.77969 -8.19735 -8.10413 -6.08739 -4.09657 3.31631 3.36799 3.42279 3.65112 3.82023 3.99224 4.24194 4.36553 4.42787 4.69556 4.88580 4.98453 5.12823 5.18743 5.28008 5.28491 5.30573 5.40911 5.47221 5.54225 5.56687 5.69896 5.78402 5.80717 5.88346 5.96450 6.03039 6.03278 6.09899 6.16715 6.25909 6.59511 7.08715 7.11318 7.14940 7.45645 7.82949 8.19129 8.63537 9.04938 9.55273 11.02916 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.024076 B = 0.004293 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.694140 B = 6521.291668 C = 6901.433488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 H 0.113 0.887 4 C 0.062 3.938 5 N -0.522 5.522 6 C 0.063 3.937 7 C 0.066 3.934 8 O -0.379 6.379 9 C 0.195 3.805 10 C -0.509 4.509 11 H 0.066 0.934 12 C 0.056 3.944 13 N -0.900 5.900 14 Si 0.906 3.094 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.271 1.271 18 C 0.057 3.943 19 C -0.121 4.121 20 H 0.091 0.909 21 C -0.141 4.141 22 C 0.292 3.708 23 F -0.204 7.204 24 F -0.201 7.201 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.089 0.911 29 H 0.038 0.962 30 H 0.084 0.916 31 H 0.040 0.960 32 H 0.040 0.960 33 H 0.036 0.964 34 H 0.001 0.999 35 H 0.003 0.997 36 H 0.263 0.737 37 H 0.095 0.905 38 H 0.037 0.963 39 H 0.072 0.928 40 H 0.053 0.947 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.957 -7.668 -6.175 18.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.145 4.145 3 H 0.131 0.869 4 C -0.066 4.066 5 N -0.246 5.246 6 C -0.064 4.064 7 C -0.012 4.012 8 O -0.298 6.298 9 C 0.120 3.880 10 C -0.548 4.548 11 H 0.085 0.915 12 C -0.145 4.145 13 N -0.540 5.540 14 Si 0.733 3.267 15 H -0.205 1.205 16 H -0.212 1.212 17 H -0.196 1.196 18 C -0.071 4.071 19 C -0.141 4.141 20 H 0.109 0.891 21 C -0.198 4.198 22 C 0.256 3.744 23 F -0.185 7.185 24 F -0.181 7.181 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.107 0.893 29 H 0.056 0.944 30 H 0.102 0.898 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.019 0.981 35 H 0.020 0.980 36 H 0.073 0.927 37 H 0.113 0.887 38 H 0.055 0.945 39 H 0.091 0.909 40 H 0.072 0.928 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.757 -7.051 -6.227 18.352 hybrid contribution 0.190 -0.281 -0.080 0.349 sum -15.567 -7.333 -6.306 18.327 Atomic orbital electron populations 1.21800 0.93307 1.02747 1.03024 1.22195 0.97259 1.02382 0.92713 0.86865 1.22093 0.88201 0.98922 0.97401 1.61799 1.06364 1.54323 1.02135 1.22130 0.95870 0.96579 0.91850 1.22265 0.93412 0.86750 0.98821 1.87946 1.28281 1.18833 1.94731 1.20168 0.76366 0.96428 0.95019 1.21049 0.92593 0.90967 1.50157 0.91543 1.24938 0.95466 0.98831 0.95282 1.69970 0.98144 1.35085 1.50788 0.86366 0.77535 0.84519 0.78251 1.20535 1.21156 1.19606 1.22153 1.01919 0.94151 0.88856 1.22135 0.90956 1.01199 0.99792 0.89083 1.21755 1.02370 0.93076 1.02603 1.21243 0.93749 0.75430 0.84009 1.92952 1.89166 1.39480 1.96871 1.92970 1.91858 1.79659 1.53658 0.91202 0.91715 0.92073 0.89298 0.94386 0.89784 0.94173 0.94223 0.94589 0.98092 0.97969 0.92750 0.88678 0.94477 0.90906 0.92806 0.90026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 8.96 37.16 0.33 -1.10 16 2 C -0.13 -1.44 2.17 -90.54 -0.20 -1.63 16 3 H 0.11 1.36 6.58 -51.93 -0.34 1.02 16 4 C 0.06 0.72 4.63 -3.83 -0.02 0.71 16 5 N -0.52 -7.30 3.89 -234.67 -0.91 -8.21 16 6 C 0.06 0.89 5.34 -3.82 -0.02 0.87 16 7 C 0.07 1.16 6.00 37.16 0.22 1.39 16 8 O -0.38 -8.85 10.27 -35.23 -0.36 -9.21 16 9 C 0.19 5.26 5.69 36.01 0.20 5.47 16 10 C -0.51 -14.85 9.43 -34.44 -0.32 -15.18 16 11 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 12 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 13 N -0.90 -26.84 13.29 55.43 0.74 -26.11 16 14 Si 0.91 21.78 29.54 -169.99 -5.02 16.76 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 18 C 0.06 0.75 4.62 -3.84 -0.02 0.73 16 19 C -0.12 -1.53 2.81 -90.54 -0.25 -1.79 16 20 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 21 C -0.14 -1.93 8.61 37.16 0.32 -1.61 16 22 C 0.29 3.66 1.30 -26.61 -0.03 3.62 16 23 F -0.20 -2.68 15.62 2.25 0.04 -2.65 16 24 F -0.20 -2.69 16.06 2.25 0.04 -2.65 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.61 7.88 -51.93 -0.41 0.20 16 27 H 0.06 0.58 7.75 -51.93 -0.40 0.17 16 28 H 0.09 0.97 8.01 -51.93 -0.42 0.55 16 29 H 0.04 0.43 7.87 -51.93 -0.41 0.02 16 30 H 0.08 1.17 7.99 -51.93 -0.41 0.76 16 31 H 0.04 0.48 8.12 -51.93 -0.42 0.06 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.04 0.62 6.22 -51.93 -0.32 0.30 16 34 H 0.00 0.04 8.14 -51.93 -0.42 -0.39 16 35 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.10 1.34 6.12 -51.93 -0.32 1.02 16 38 H 0.04 0.46 7.87 -51.93 -0.41 0.05 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.05 0.67 7.76 -51.93 -0.40 0.27 16 41 H 0.08 1.22 6.01 -51.93 -0.31 0.91 16 LS Contribution 328.17 15.07 4.95 4.95 Total: -1.00 -30.80 328.17 -7.09 -37.88 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -6.66 Total: -3.73 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: 0.12 Total: -7.03 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: -0.18 Total: -34.32 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -0.36 Total: -9.21 kcal Atomic # 9 Polarization: -5.37 SS G_CDS: 0.07 Total: -5.30 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.80 -7.09 -37.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599515306.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.530 kcal (2) G-P(sol) polarization free energy of solvation -30.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds