Wall clock time and date at job start Mon Mar 30 2020 02:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.50359 * 2 1 4 4 C 1.53043 * 109.50009 * 120.07220 * 2 1 3 5 5 N 1.46849 * 109.51992 * 179.12001 * 4 2 1 6 6 C 1.46902 * 110.99573 * 174.16186 * 5 4 2 7 7 C 1.53005 * 109.47011 * 189.99897 * 6 5 4 8 8 O 1.42899 * 109.46701 * 65.00021 * 7 6 5 9 9 C 1.42901 * 113.99726 * 180.02562 * 8 7 6 10 10 C 1.50704 * 109.47026 * 180.02562 * 9 8 7 11 11 H 1.08002 * 119.99966 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00010 * 180.02562 * 10 9 8 13 13 N 1.31522 * 119.99734 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00186 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.46985 * 89.99915 * 14 12 10 16 16 H 1.48499 * 109.47248 * 210.00028 * 14 12 10 17 17 H 1.48500 * 109.47136 * 329.99763 * 14 12 10 18 18 C 1.46844 * 111.19919 * 298.26089 * 5 4 2 19 19 C 1.53034 * 109.52466 * 61.74328 * 18 5 4 20 20 H 1.09001 * 109.50261 * 180.84399 * 19 18 5 21 21 C 1.52997 * 109.50429 * 60.76027 * 19 18 5 22 22 C 1.53112 * 109.50528 * 239.87637 * 2 1 3 23 23 F 1.39900 * 109.52490 * 302.31413 * 22 2 1 24 24 F 1.39901 * 109.52356 * 62.49955 * 22 2 1 25 25 H 1.09001 * 109.46801 * 299.92608 * 1 2 3 26 26 H 1.09001 * 109.46998 * 59.92205 * 1 2 3 27 27 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46316 * 299.13993 * 4 2 1 29 29 H 1.08999 * 109.45884 * 59.10403 * 4 2 1 30 30 H 1.08997 * 109.47178 * 310.00183 * 6 5 4 31 31 H 1.09002 * 109.46976 * 70.00321 * 6 5 4 32 32 H 1.08997 * 109.47096 * 185.00193 * 7 6 5 33 33 H 1.08998 * 109.46888 * 305.00635 * 7 6 5 34 34 H 1.09004 * 109.47173 * 299.99636 * 9 8 7 35 35 H 1.08999 * 109.47340 * 60.00157 * 9 8 7 36 36 H 0.97003 * 119.99322 * 180.02562 * 13 12 10 37 37 H 1.08999 * 109.46287 * 181.76160 * 18 5 4 38 38 H 1.08999 * 109.46320 * 301.72665 * 18 5 4 39 39 H 1.09003 * 109.46765 * 60.00060 * 21 19 18 40 40 H 1.08995 * 109.47139 * 179.97438 * 21 19 18 41 41 H 1.09000 * 109.47058 * 300.00039 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0409 -0.7229 1.2485 5 7 3.5093 -0.7416 1.2383 6 6 4.0372 -1.3048 2.4881 7 6 5.5496 -1.0818 2.5493 8 8 5.8219 0.3192 2.6212 9 6 7.2134 0.6385 2.6820 10 6 7.3830 2.1341 2.7554 11 1 6.5148 2.7766 2.7552 12 6 8.6463 2.6823 2.8217 13 7 9.7035 1.8999 2.8214 14 14 8.8565 4.5362 2.9120 15 1 8.8660 4.9646 4.3338 16 1 10.1393 4.9208 2.2705 17 1 7.7311 5.1970 2.2034 18 6 4.0230 -1.4729 0.0731 19 6 3.5713 -0.7724 -1.2103 20 1 3.9402 -1.3240 -2.0751 21 6 4.1279 0.6524 -1.2376 22 6 2.0413 -0.7243 -1.2483 23 9 1.5330 -2.0275 -1.2738 24 9 1.6235 -0.0359 -2.3923 25 1 -0.3633 0.5127 0.8907 26 1 -0.3633 0.5151 -0.8893 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6905 -0.2014 2.1390 29 1 1.6647 -1.7459 1.2552 30 1 3.5627 -0.8129 3.3372 31 1 3.8259 -2.3736 2.5228 32 1 5.9544 -1.5764 3.4321 33 1 6.0145 -1.4967 1.6550 34 1 7.6532 0.1795 3.5675 35 1 7.7125 0.2592 1.7902 36 1 10.5923 2.2856 2.8685 37 1 5.1121 -1.4962 0.1102 38 1 3.6375 -2.4924 0.0854 39 1 5.2170 0.6176 -1.2070 40 1 3.8063 1.1507 -2.1521 41 1 3.7575 1.2038 -0.3734 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599515306.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:35 Heat of formation + Delta-G solvation = -174.235970 kcal Electronic energy + Delta-G solvation = -23088.073591 eV Core-core repulsion = 19444.503376 eV Total energy + Delta-G solvation = -3643.570216 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.159 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.04261 -48.00659 -40.24489 -38.32084 -35.33001 -34.62573 -34.48033 -30.60808 -28.77589 -27.88621 -27.23733 -24.97446 -24.38281 -23.43262 -21.92732 -20.33533 -18.57827 -18.43326 -17.84661 -17.54678 -17.23570 -17.09422 -16.42118 -16.09730 -15.92696 -15.39947 -14.97898 -14.85914 -14.41051 -14.37135 -14.05961 -13.93313 -13.73333 -13.70615 -13.47809 -13.07618 -12.96957 -12.88175 -12.76138 -12.64976 -12.55977 -12.34380 -12.11258 -12.00055 -11.84700 -11.56363 -11.20960 -11.09404 -10.80790 -10.12185 -9.21161 -8.28718 -6.39789 1.41773 1.44073 1.56204 2.37274 2.64998 2.80996 3.02343 3.05519 3.26825 3.28197 3.42865 3.77610 3.98969 4.11948 4.20625 4.26688 4.30134 4.36971 4.44323 4.51180 4.57207 4.64106 4.72706 4.76048 4.79460 4.87427 4.89800 4.97358 5.01406 5.02775 5.07440 5.22736 5.24283 5.44500 5.59419 6.00720 6.04916 6.10650 6.61337 6.90971 7.32528 8.83586 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.024076 B = 0.004293 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.694140 B = 6521.291668 C = 6901.433488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.125 4.125 3 H 0.105 0.895 4 C 0.065 3.935 5 N -0.544 5.544 6 C 0.072 3.928 7 C 0.056 3.944 8 O -0.390 6.390 9 C 0.211 3.789 10 C -0.540 4.540 11 H 0.061 0.939 12 C 0.007 3.993 13 N -0.932 5.932 14 Si 0.979 3.021 15 H -0.268 1.268 16 H -0.276 1.276 17 H -0.265 1.265 18 C 0.060 3.940 19 C -0.121 4.121 20 H 0.101 0.899 21 C -0.134 4.134 22 C 0.292 3.708 23 F -0.205 7.205 24 F -0.206 7.206 25 H 0.085 0.915 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.098 0.902 29 H 0.048 0.952 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.046 0.954 33 H 0.038 0.962 34 H -0.018 1.018 35 H -0.019 1.019 36 H 0.269 0.731 37 H 0.079 0.921 38 H 0.050 0.950 39 H 0.055 0.945 40 H 0.062 0.938 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.241 -7.319 -6.081 19.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.144 4.144 3 H 0.123 0.877 4 C -0.062 4.062 5 N -0.269 5.269 6 C -0.055 4.055 7 C -0.022 4.022 8 O -0.310 6.310 9 C 0.135 3.865 10 C -0.578 4.578 11 H 0.079 0.921 12 C -0.191 4.191 13 N -0.572 5.572 14 Si 0.802 3.198 15 H -0.194 1.194 16 H -0.201 1.201 17 H -0.189 1.189 18 C -0.068 4.068 19 C -0.140 4.140 20 H 0.119 0.881 21 C -0.192 4.192 22 C 0.256 3.744 23 F -0.186 7.186 24 F -0.187 7.187 25 H 0.104 0.896 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.117 0.883 29 H 0.066 0.934 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.064 0.936 33 H 0.056 0.944 34 H -0.001 1.001 35 H -0.001 1.001 36 H 0.078 0.922 37 H 0.098 0.902 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -17.063 -6.725 -6.133 19.339 hybrid contribution 0.576 -0.478 -0.132 0.761 sum -16.487 -7.203 -6.266 19.051 Atomic orbital electron populations 1.21783 0.91654 1.03148 1.03816 1.22196 0.98597 1.01629 0.91972 0.87705 1.22125 0.86574 0.99660 0.97879 1.61739 1.08008 1.54981 1.02133 1.22040 0.92819 0.98466 0.92199 1.22613 0.96517 0.83781 0.99241 1.87901 1.25725 1.22604 1.94751 1.19754 0.78148 0.95567 0.92986 1.21366 0.93003 0.92037 1.51381 0.92096 1.25909 0.94814 1.04263 0.94147 1.70077 0.98787 1.37482 1.50863 0.85240 0.77865 0.77854 0.78818 1.19352 1.20131 1.18883 1.22089 1.01018 0.94800 0.88859 1.22118 0.91394 1.00425 1.00075 0.88107 1.21652 1.01178 0.93932 1.02395 1.21289 0.93406 0.75407 0.84305 1.92946 1.89145 1.39660 1.96896 1.92959 1.91874 1.79777 1.54080 0.89609 0.91794 0.91816 0.88330 0.93366 0.89439 0.91118 0.93559 0.94376 1.00076 1.00080 0.92204 0.90235 0.93206 0.92600 0.91877 0.91450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 8.96 71.98 0.64 -1.81 16 2 C -0.12 -2.63 2.17 -10.74 -0.02 -2.66 16 3 H 0.10 2.41 6.58 -2.38 -0.02 2.40 16 4 C 0.07 1.38 4.63 86.33 0.40 1.78 16 5 N -0.54 -14.53 3.89 -896.36 -3.49 -18.01 16 6 C 0.07 1.92 5.34 86.30 0.46 2.38 16 7 C 0.06 1.97 6.00 71.98 0.43 2.40 16 8 O -0.39 -18.57 10.27 -148.98 -1.53 -20.10 16 9 C 0.21 11.75 5.69 71.24 0.41 12.16 16 10 C -0.54 -32.04 9.43 25.60 0.24 -31.80 16 11 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 12 C 0.01 0.39 5.46 84.65 0.46 0.86 16 13 N -0.93 -56.09 13.29 21.45 0.28 -55.81 16 14 Si 0.98 44.40 29.54 68.60 2.03 46.42 16 15 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 16 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 17 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 18 C 0.06 1.53 4.62 86.33 0.40 1.93 16 19 C -0.12 -2.96 2.81 -10.74 -0.03 -2.99 16 20 H 0.10 2.25 8.14 -2.39 -0.02 2.24 16 21 C -0.13 -3.69 8.61 71.98 0.62 -3.07 16 22 C 0.29 6.90 1.30 30.67 0.04 6.94 16 23 F -0.21 -5.01 15.62 44.97 0.70 -4.31 16 24 F -0.21 -5.26 16.06 44.97 0.72 -4.53 16 25 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.06 1.09 7.88 -2.39 -0.02 1.07 16 27 H 0.06 1.04 7.75 -2.39 -0.02 1.03 16 28 H 0.10 1.91 8.01 -2.39 -0.02 1.89 16 29 H 0.05 0.94 7.87 -2.39 -0.02 0.92 16 30 H 0.09 2.28 7.99 -2.39 -0.02 2.26 16 31 H 0.07 1.48 8.12 -2.39 -0.02 1.46 16 32 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.04 1.33 6.22 -2.39 -0.01 1.32 16 34 H -0.02 -1.08 8.14 -2.38 -0.02 -1.10 16 35 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 36 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 37 H 0.08 2.25 6.12 -2.39 -0.01 2.24 16 38 H 0.05 1.13 7.87 -2.39 -0.02 1.11 16 39 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.06 1.57 7.76 -2.39 -0.02 1.55 16 41 H 0.07 2.04 6.01 -2.39 -0.01 2.03 16 Total: -1.00 -65.67 328.17 3.77 -61.90 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: 1.00 Total: 8.32 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: 4.05 Total: -13.89 kcal Atomic # 7 Polarization: -70.62 SS G_CDS: -3.20 Total: -73.82 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -1.53 Total: -20.10 kcal Atomic # 9 Polarization: -10.27 SS G_CDS: 1.42 Total: -8.84 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -65.67 3.77 -61.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599515306.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.334 kcal (2) G-P(sol) polarization free energy of solvation -65.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds