Wall clock time and date at job start Mon Mar 30 2020 02:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.47181 * 2 1 4 4 C 1.52999 * 109.46957 * 240.00248 * 2 1 3 5 5 C 1.50693 * 109.47543 * 64.99984 * 4 2 1 6 6 H 1.08001 * 120.00309 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00301 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99807 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00100 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47549 * 89.99445 * 9 7 5 11 11 H 1.48505 * 109.46923 * 209.99831 * 9 7 5 12 12 H 1.48501 * 109.47215 * 329.99288 * 9 7 5 13 13 C 1.53002 * 109.47387 * 120.00110 * 2 1 3 14 14 N 1.46902 * 109.46820 * 295.00077 * 13 2 1 15 15 C 1.46947 * 111.02071 * 171.03593 * 14 13 2 16 16 C 1.52895 * 108.63392 * 52.06895 * 15 14 13 17 17 C 1.50718 * 109.88557 * 50.35304 * 16 15 14 18 18 C 1.38697 * 118.47483 * 163.31875 * 17 16 15 19 19 C 1.38049 * 120.40237 * 179.83180 * 18 17 16 20 20 C 1.38225 * 119.85558 * 0.02562 * 19 18 17 21 21 C 1.38234 * 119.84297 * 0.06042 * 20 19 18 22 22 F 1.35094 * 119.84280 * 179.97438 * 21 20 19 23 23 C 1.37792 * 121.66334 * 343.30062 * 17 16 15 24 24 C 1.46636 * 110.99750 * 293.95247 * 14 13 2 25 25 H 1.09004 * 109.47181 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47351 * 300.00027 * 1 2 3 27 27 H 1.08998 * 109.47253 * 59.99978 * 1 2 3 28 28 H 1.09002 * 109.47428 * 185.00157 * 4 2 1 29 29 H 1.09003 * 109.46766 * 304.99661 * 4 2 1 30 30 H 0.96998 * 119.99414 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.47169 * 174.99958 * 13 2 1 32 32 H 1.08999 * 109.47112 * 54.99833 * 13 2 1 33 33 H 1.08992 * 109.51478 * 292.35494 * 15 14 13 34 34 H 1.09002 * 109.62351 * 171.84369 * 15 14 13 35 35 H 1.09002 * 109.38776 * 290.25097 * 16 15 14 36 36 H 1.08996 * 109.38478 * 170.45648 * 16 15 14 37 37 H 1.08001 * 119.80204 * 359.81002 * 18 17 16 38 38 H 1.07997 * 120.06713 * 179.97438 * 19 18 17 39 39 H 1.08001 * 120.07502 * 180.02562 * 20 19 18 40 40 H 1.09001 * 109.30133 * 168.82945 * 24 14 13 41 41 H 1.08999 * 109.30461 * 49.44849 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6413 0.0570 -2.4766 6 1 1.0799 0.9742 -2.3758 7 6 1.9922 -0.4022 -3.7283 8 7 2.6754 -1.5193 -3.8512 9 14 1.4987 0.5629 -5.2496 10 1 2.5647 1.5418 -5.5824 11 1 1.3109 -0.3710 -6.3889 12 1 0.2280 1.2851 -4.9870 13 6 2.0400 -0.7213 1.2492 14 7 1.6514 0.0374 2.4456 15 6 1.9351 -0.7257 3.6689 16 6 3.3920 -1.1877 3.6296 17 6 4.2919 -0.0199 3.3168 18 6 5.6487 -0.1422 3.5773 19 6 6.5097 0.9014 3.3029 20 6 6.0177 2.0762 2.7658 21 6 4.6656 2.2011 2.5070 22 9 4.1847 3.3494 1.9826 23 6 3.7985 1.1511 2.7838 24 6 2.3328 1.3351 2.4893 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 3.1262 -0.7995 -1.2057 29 1 1.6053 -1.7198 -1.2951 30 1 2.9226 -1.8422 -4.7318 31 1 3.1263 -0.7995 1.2055 32 1 1.6054 -1.7198 1.2951 33 1 1.2770 -1.5931 3.7178 34 1 1.7754 -0.0917 4.5411 35 1 3.5090 -1.9509 2.8602 36 1 3.6652 -1.6058 4.5984 37 1 6.0340 -1.0594 3.9976 38 1 7.5651 0.8005 3.5082 39 1 6.6882 2.8948 2.5493 40 1 1.8837 1.9519 3.2677 41 1 2.2186 1.8346 1.5273 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602469860.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:17 Heat of formation + Delta-G solvation = -33.361086 kcal Electronic energy + Delta-G solvation = -21975.017360 eV Core-core repulsion = 18768.325163 eV Total energy + Delta-G solvation = -3206.692197 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.82196 -40.37827 -37.51892 -34.82725 -32.53715 -31.94724 -30.95503 -29.00765 -27.02943 -26.25332 -24.37561 -23.45568 -22.40553 -22.13295 -19.82307 -18.53913 -17.32140 -16.48149 -16.36381 -15.82262 -15.69387 -15.12642 -14.87498 -14.57109 -14.33862 -13.91175 -13.64107 -13.30929 -13.08677 -12.67747 -12.33066 -12.24571 -12.09706 -11.74929 -11.48135 -11.43619 -11.34790 -11.12673 -10.83611 -10.82421 -10.61817 -10.25327 -10.18113 -9.58852 -9.10352 -8.92616 -8.73132 -8.59241 -8.29258 -8.10029 -5.94478 -3.95159 1.12955 1.15490 3.35531 3.41560 3.45272 3.50272 4.12513 4.24779 4.51388 4.57517 4.68317 4.82567 5.02629 5.09266 5.15574 5.31377 5.36084 5.41614 5.54327 5.65268 5.75049 5.81648 5.91471 5.97027 5.99504 6.06397 6.09990 6.21085 6.26988 6.41058 6.44604 6.58333 6.72200 6.87427 7.03079 7.13162 7.24080 7.34004 7.41354 7.73033 7.88933 8.05907 8.50366 9.11085 9.68038 11.17163 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018019 B = 0.005065 C = 0.004635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.566780 B = 5526.815120 C = 6040.089730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.082 4.082 3 H 0.055 0.945 4 C 0.029 3.971 5 C -0.510 4.510 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.054 3.946 14 N -0.519 5.519 15 C 0.051 3.949 16 C -0.120 4.120 17 C -0.048 4.048 18 C -0.131 4.131 19 C -0.095 4.095 20 C -0.159 4.159 21 C 0.105 3.895 22 F -0.136 7.136 23 C -0.137 4.137 24 C 0.087 3.913 25 H 0.039 0.961 26 H 0.042 0.958 27 H 0.053 0.947 28 H 0.011 0.989 29 H 0.016 0.984 30 H 0.259 0.741 31 H 0.036 0.964 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.126 0.874 38 H 0.130 0.870 39 H 0.133 0.867 40 H 0.086 0.914 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.404 2.868 18.264 19.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.073 0.927 4 C -0.009 4.009 5 C -0.549 4.549 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.073 4.073 14 N -0.240 5.240 15 C -0.078 4.078 16 C -0.158 4.158 17 C -0.049 4.049 18 C -0.149 4.149 19 C -0.113 4.113 20 C -0.178 4.178 21 C 0.085 3.915 22 F -0.115 7.115 23 C -0.140 4.140 24 C -0.041 4.041 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.029 0.971 29 H 0.034 0.966 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.144 0.856 38 H 0.148 0.852 39 H 0.151 0.849 40 H 0.104 0.896 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.898 2.868 18.078 18.714 hybrid contribution 0.892 0.513 -1.064 1.480 sum 4.790 3.382 17.014 17.996 Atomic orbital electron populations 1.21591 0.95715 1.00521 1.00203 1.21242 0.95954 0.99026 0.93850 0.92686 1.19105 0.95823 0.95516 0.90451 1.21233 1.34465 1.08215 0.90969 0.92591 1.25014 0.95380 0.95079 0.99067 1.69970 1.39227 1.21252 1.23307 0.86641 0.78953 0.79826 0.82882 1.20784 1.21313 1.19851 1.22409 0.98197 0.97212 0.89451 1.62660 1.55375 1.03459 1.02466 1.22213 0.93388 0.98638 0.93529 1.21185 0.96121 0.95833 1.02699 1.19423 0.94285 0.94194 0.96977 1.21126 0.92714 0.99262 1.01821 1.20886 0.99847 0.92501 0.98079 1.21070 0.93647 0.99952 1.03128 1.17636 0.92224 0.82838 0.98758 1.91494 1.88777 1.47189 1.84004 1.20496 0.98409 0.93478 1.01583 1.21169 0.86056 0.93362 1.03541 0.94177 0.93910 0.92764 0.97077 0.96608 0.93155 0.94614 0.91157 0.89920 0.90785 0.89555 0.90117 0.85628 0.85227 0.84928 0.89605 0.88309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 8.89 37.15 0.33 -2.09 16 2 C -0.08 -1.72 2.27 -90.62 -0.21 -1.92 16 3 H 0.05 1.20 6.16 -51.93 -0.32 0.88 16 4 C 0.03 0.75 4.45 -27.89 -0.12 0.62 16 5 C -0.51 -14.56 8.41 -34.44 -0.29 -14.84 16 6 H 0.06 1.56 7.06 -52.49 -0.37 1.19 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -27.36 13.29 55.43 0.74 -26.63 16 9 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 12 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.05 0.95 3.35 -3.82 -0.01 0.94 16 14 N -0.52 -7.67 4.48 -236.37 -1.06 -8.73 16 15 C 0.05 0.59 6.01 -3.85 -0.02 0.57 16 16 C -0.12 -1.34 5.17 -27.93 -0.14 -1.49 16 17 C -0.05 -0.63 5.05 -104.61 -0.53 -1.15 16 18 C -0.13 -1.49 9.65 -39.48 -0.38 -1.87 16 19 C -0.10 -1.04 10.05 -39.66 -0.40 -1.44 16 20 C -0.16 -1.97 10.02 -39.59 -0.40 -2.37 16 21 C 0.11 1.54 7.23 -39.32 -0.28 1.25 16 22 F -0.14 -2.11 16.54 2.25 0.04 -2.07 16 23 C -0.14 -1.99 5.21 -104.55 -0.54 -2.53 16 24 C 0.09 1.28 5.09 -5.16 -0.03 1.26 16 25 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.04 0.75 7.75 -51.93 -0.40 0.35 16 27 H 0.05 1.14 6.95 -51.93 -0.36 0.78 16 28 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.04 0.66 5.87 -51.93 -0.30 0.36 16 32 H 0.07 1.21 8.09 -51.93 -0.42 0.79 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.78 8.04 -51.93 -0.42 0.36 16 35 H 0.09 1.04 7.05 -51.93 -0.37 0.68 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 39 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 40 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.10 1.65 5.73 -51.93 -0.30 1.35 16 LS Contribution 325.49 15.07 4.91 4.91 Total: -1.00 -30.88 325.49 -9.73 -40.61 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -6.20 Total: -1.57 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: -3.13 Total: -23.57 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: -0.32 Total: -35.35 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.88 -9.73 -40.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602469860.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.248 kcal (2) G-P(sol) polarization free energy of solvation -30.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds