Wall clock time and date at job start Mon Mar 30 2020 02:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47571 * 2 1 4 4 C 1.52996 * 109.46700 * 120.00138 * 2 1 3 5 5 C 1.50700 * 109.47318 * 294.99655 * 4 2 1 6 6 H 1.07998 * 119.99609 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00657 * 180.02562 * 5 4 2 8 8 N 1.31521 * 119.99623 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00333 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47072 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47286 * 119.99430 * 9 7 5 12 12 H 1.48495 * 109.47190 * 239.99398 * 9 7 5 13 13 C 1.53004 * 109.46821 * 239.99287 * 2 1 3 14 14 N 1.46901 * 109.46919 * 65.01036 * 13 2 1 15 15 C 1.47956 * 111.00374 * 70.63284 * 14 13 2 16 16 C 1.53938 * 86.17946 * 137.58509 * 15 14 13 17 17 C 1.47956 * 111.00082 * 169.99705 * 14 13 2 18 18 H 1.08998 * 113.86112 * 336.74097 * 17 14 13 19 19 C 1.50707 * 113.76085 * 108.09434 * 17 14 13 20 20 C 1.38265 * 119.98358 * 36.08763 * 19 17 14 21 21 C 1.38223 * 120.04896 * 180.02562 * 20 19 17 22 22 C 1.38221 * 120.02755 * 359.97438 * 21 20 19 23 23 C 1.38440 * 119.97131 * 359.97438 * 22 21 20 24 24 F 1.35102 * 120.02757 * 180.29625 * 23 22 21 25 25 C 1.38168 * 119.98629 * 216.06369 * 19 17 14 26 26 H 1.09009 * 109.46937 * 60.00013 * 1 2 3 27 27 H 1.08996 * 109.47571 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46958 * 300.00203 * 1 2 3 29 29 H 1.08998 * 109.47637 * 54.99738 * 4 2 1 30 30 H 1.09007 * 109.47177 * 174.99738 * 4 2 1 31 31 H 0.96995 * 119.99829 * 180.02562 * 8 7 5 32 32 H 1.08991 * 109.47507 * 305.00361 * 13 2 1 33 33 H 1.08998 * 109.46878 * 185.00021 * 13 2 1 34 34 H 1.09004 * 113.75692 * 23.26791 * 15 14 13 35 35 H 1.09002 * 113.86036 * 251.91659 * 15 14 13 36 36 H 1.09000 * 113.73409 * 221.91909 * 16 15 14 37 37 H 1.08999 * 113.82904 * 90.65096 * 16 15 14 38 38 H 1.08001 * 119.97935 * 359.97438 * 20 19 17 39 39 H 1.08001 * 119.98493 * 180.02562 * 21 20 19 40 40 H 1.08000 * 120.01281 * 180.02562 * 22 21 20 41 41 H 1.08001 * 120.02005 * 359.97438 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6412 0.0570 2.4766 6 1 1.0799 0.9741 2.3757 7 6 1.9930 -0.4017 3.7283 8 7 2.6761 -1.5188 3.8512 9 14 1.4982 0.5627 5.2496 10 1 0.7410 1.7738 4.8434 11 1 0.6447 -0.2869 6.1184 12 1 2.7160 0.9682 5.9964 13 6 2.0399 -0.7214 -1.2492 14 7 1.6514 0.0373 -2.4456 15 6 2.4200 1.2974 -2.5472 16 6 2.5498 0.9770 -4.0473 17 6 2.3243 -0.4935 -3.6517 18 1 3.2448 -1.0374 -3.4398 19 6 1.4027 -1.2382 -4.5830 20 6 0.0991 -0.8101 -4.7536 21 6 -0.7475 -1.4924 -5.6070 22 6 -0.2915 -2.6034 -6.2913 23 6 1.0139 -3.0324 -6.1221 24 9 1.4625 -4.1146 -6.7950 25 6 1.8609 -2.3482 -5.2664 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6052 -1.7198 1.2952 30 1 3.1262 -0.7996 1.2056 31 1 2.9233 -1.8417 4.7318 32 1 1.6053 -1.7199 -1.2951 33 1 3.1262 -0.7997 -1.2055 34 1 3.3685 1.2778 -2.0103 35 1 1.8316 2.1909 -2.3383 36 1 3.5416 1.1747 -4.4539 37 1 1.7493 1.3948 -4.6577 38 1 -0.2582 0.0576 -4.2190 39 1 -1.7654 -1.1569 -5.7398 40 1 -0.9530 -3.1362 -6.9584 41 1 2.8795 -2.6821 -5.1336 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602485013.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:16 Heat of formation + Delta-G solvation = -5.352955 kcal Electronic energy + Delta-G solvation = -21023.879777 eV Core-core repulsion = 17818.402104 eV Total energy + Delta-G solvation = -3205.477674 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.97900 -40.44014 -38.41241 -35.24822 -32.38604 -31.56394 -30.48084 -29.07077 -26.72949 -25.94560 -24.63425 -22.85556 -22.43344 -22.09115 -19.57316 -18.92146 -17.48337 -16.65563 -16.25877 -16.17537 -15.68847 -15.40567 -15.18578 -14.58440 -14.28246 -14.04838 -13.81394 -13.36383 -12.74114 -12.65201 -12.55597 -12.24244 -11.96089 -11.82959 -11.53247 -11.45348 -11.20240 -10.89786 -10.83138 -10.76208 -10.62692 -10.28531 -10.20348 -9.68535 -9.23495 -9.04413 -8.92886 -8.71200 -8.55290 -8.33715 -5.98227 -3.99404 1.05377 1.11291 3.31461 3.39134 3.42185 3.43302 3.98669 4.24457 4.46841 4.49430 4.60239 4.71244 4.90824 4.98409 5.18048 5.23667 5.34341 5.37697 5.43085 5.54431 5.65569 5.71915 5.76848 5.85785 5.98063 5.99619 6.10555 6.12969 6.24962 6.29850 6.43136 6.48612 6.59425 6.75812 6.81858 7.02266 7.16027 7.20084 7.34947 7.68489 7.84103 8.01951 8.45814 9.07192 9.64146 11.13356 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027287 B = 0.003387 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.881897 B = 8264.536942 C = 8509.561603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.078 4.078 3 H 0.055 0.945 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.027 3.973 14 N -0.465 5.465 15 C 0.005 3.995 16 C -0.135 4.135 17 C 0.060 3.940 18 H 0.086 0.914 19 C -0.032 4.032 20 C -0.098 4.098 21 C -0.096 4.096 22 C -0.159 4.159 23 C 0.091 3.909 24 F -0.144 7.144 25 C -0.149 4.149 26 H 0.040 0.960 27 H 0.039 0.961 28 H 0.054 0.946 29 H 0.016 0.984 30 H 0.012 0.988 31 H 0.259 0.741 32 H 0.070 0.930 33 H 0.036 0.964 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.138 0.862 39 H 0.131 0.869 40 H 0.131 0.869 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.761 1.939 -20.909 21.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.097 4.097 3 H 0.073 0.927 4 C -0.011 4.011 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.101 4.101 14 N -0.187 5.187 15 C -0.124 4.124 16 C -0.173 4.173 17 C -0.050 4.050 18 H 0.104 0.896 19 C -0.033 4.033 20 C -0.116 4.116 21 C -0.114 4.114 22 C -0.178 4.178 23 C 0.072 3.928 24 F -0.123 7.123 25 C -0.169 4.169 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.034 0.966 30 H 0.030 0.970 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.054 0.946 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.109 0.891 38 H 0.156 0.844 39 H 0.149 0.851 40 H 0.149 0.851 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.378 1.793 -20.734 21.084 hybrid contribution 0.809 -0.087 0.999 1.289 sum -2.569 1.706 -19.734 19.974 Atomic orbital electron populations 1.21585 0.95759 1.00546 1.00104 1.21146 0.95935 0.98914 0.93693 0.92677 1.19133 0.95852 0.95591 0.90505 1.21263 1.34482 1.08276 0.90962 0.92534 1.25024 0.95341 0.95095 0.99111 1.69979 1.39177 1.21243 1.23266 0.86577 0.78252 0.80136 0.83300 1.19744 1.21072 1.21115 1.22830 0.97971 0.98276 0.91041 1.68521 1.45421 1.03213 1.01548 1.23784 0.98039 0.95660 0.94907 1.23448 1.02372 0.94110 0.97383 1.22369 0.95016 0.95165 0.92411 0.89599 1.19393 0.94650 0.93782 0.95476 1.21145 0.92739 1.00622 0.97103 1.21046 1.00026 0.94517 0.95819 1.21123 0.94461 0.99192 1.02978 1.17633 0.93494 0.86191 0.95445 1.91486 1.89685 1.52553 1.78536 1.21014 1.00461 0.96753 0.98625 0.94077 0.94180 0.92715 0.96606 0.97002 0.93156 0.91164 0.94575 0.90971 0.89281 0.91038 0.89112 0.84443 0.85110 0.85120 0.85025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 8.89 37.16 0.33 -2.05 16 2 C -0.08 -1.58 2.35 -90.62 -0.21 -1.79 16 3 H 0.05 1.13 7.41 -51.93 -0.38 0.74 16 4 C 0.03 0.68 4.45 -27.89 -0.12 0.56 16 5 C -0.51 -14.31 8.41 -34.44 -0.29 -14.60 16 6 H 0.06 1.55 7.05 -52.49 -0.37 1.18 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 9 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 13 C 0.03 0.46 4.21 -3.82 -0.02 0.44 16 14 N -0.46 -6.50 4.90 -232.09 -1.14 -7.64 16 15 C 0.00 0.06 7.03 -2.77 -0.02 0.04 16 16 C -0.14 -1.36 7.75 -25.80 -0.20 -1.56 16 17 C 0.06 0.71 3.51 -67.81 -0.24 0.47 16 18 H 0.09 1.01 7.76 -51.93 -0.40 0.61 16 19 C -0.03 -0.38 5.40 -104.63 -0.56 -0.94 16 20 C -0.10 -1.08 8.96 -39.58 -0.35 -1.44 16 21 C -0.10 -0.94 10.04 -39.59 -0.40 -1.34 16 22 C -0.16 -1.62 10.03 -39.51 -0.40 -2.01 16 23 C 0.09 1.07 7.30 -39.42 -0.29 0.78 16 24 F -0.14 -1.76 17.27 2.25 0.04 -1.72 16 25 C -0.15 -1.72 9.69 -39.52 -0.38 -2.10 16 26 H 0.04 0.71 7.75 -51.92 -0.40 0.30 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.01 0.32 8.14 -51.92 -0.42 -0.10 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.04 0.62 7.69 -51.93 -0.40 0.22 16 34 H 0.07 0.91 7.78 -51.93 -0.40 0.51 16 35 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 0.85 7.76 -51.93 -0.40 0.45 16 38 H 0.14 1.51 7.78 -52.49 -0.41 1.10 16 39 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 41 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 339.05 15.07 5.11 5.11 Total: -1.00 -30.06 339.05 -10.00 -40.06 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -6.48 Total: -2.12 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: -3.25 Total: -24.07 kcal Atomic # 7 Polarization: -33.53 SS G_CDS: -0.40 Total: -33.93 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.06 -10.00 -40.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602485013.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.707 kcal (2) G-P(sol) polarization free energy of solvation -30.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds