Wall clock time and date at job start Mon Mar 30 2020 02:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47571 * 2 1 4 4 C 1.52996 * 109.46700 * 120.00138 * 2 1 3 5 5 C 1.50700 * 109.47318 * 294.99655 * 4 2 1 6 6 H 1.07998 * 119.99609 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00657 * 180.02562 * 5 4 2 8 8 N 1.31521 * 119.99623 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00333 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47072 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47286 * 119.99430 * 9 7 5 12 12 H 1.48495 * 109.47190 * 239.99398 * 9 7 5 13 13 C 1.53004 * 109.46821 * 239.99287 * 2 1 3 14 14 N 1.46901 * 109.46919 * 65.01036 * 13 2 1 15 15 C 1.47956 * 111.00374 * 70.63284 * 14 13 2 16 16 C 1.53938 * 86.17946 * 137.58509 * 15 14 13 17 17 C 1.47956 * 111.00082 * 169.99705 * 14 13 2 18 18 H 1.08998 * 113.86112 * 336.74097 * 17 14 13 19 19 C 1.50707 * 113.76085 * 108.09434 * 17 14 13 20 20 C 1.38265 * 119.98358 * 36.08763 * 19 17 14 21 21 C 1.38223 * 120.04896 * 180.02562 * 20 19 17 22 22 C 1.38221 * 120.02755 * 359.97438 * 21 20 19 23 23 C 1.38440 * 119.97131 * 359.97438 * 22 21 20 24 24 F 1.35102 * 120.02757 * 180.29625 * 23 22 21 25 25 C 1.38168 * 119.98629 * 216.06369 * 19 17 14 26 26 H 1.09009 * 109.46937 * 60.00013 * 1 2 3 27 27 H 1.08996 * 109.47571 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46958 * 300.00203 * 1 2 3 29 29 H 1.08998 * 109.47637 * 54.99738 * 4 2 1 30 30 H 1.09007 * 109.47177 * 174.99738 * 4 2 1 31 31 H 0.96995 * 119.99829 * 180.02562 * 8 7 5 32 32 H 1.08991 * 109.47507 * 305.00361 * 13 2 1 33 33 H 1.08998 * 109.46878 * 185.00021 * 13 2 1 34 34 H 1.09004 * 113.75692 * 23.26791 * 15 14 13 35 35 H 1.09002 * 113.86036 * 251.91659 * 15 14 13 36 36 H 1.09000 * 113.73409 * 221.91909 * 16 15 14 37 37 H 1.08999 * 113.82904 * 90.65096 * 16 15 14 38 38 H 1.08001 * 119.97935 * 359.97438 * 20 19 17 39 39 H 1.08001 * 119.98493 * 180.02562 * 21 20 19 40 40 H 1.08000 * 120.01281 * 180.02562 * 22 21 20 41 41 H 1.08001 * 120.02005 * 359.97438 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6412 0.0570 2.4766 6 1 1.0799 0.9741 2.3757 7 6 1.9930 -0.4017 3.7283 8 7 2.6761 -1.5188 3.8512 9 14 1.4982 0.5627 5.2496 10 1 0.7410 1.7738 4.8434 11 1 0.6447 -0.2869 6.1184 12 1 2.7160 0.9682 5.9964 13 6 2.0399 -0.7214 -1.2492 14 7 1.6514 0.0373 -2.4456 15 6 2.4200 1.2974 -2.5472 16 6 2.5498 0.9770 -4.0473 17 6 2.3243 -0.4935 -3.6517 18 1 3.2448 -1.0374 -3.4398 19 6 1.4027 -1.2382 -4.5830 20 6 0.0991 -0.8101 -4.7536 21 6 -0.7475 -1.4924 -5.6070 22 6 -0.2915 -2.6034 -6.2913 23 6 1.0139 -3.0324 -6.1221 24 9 1.4625 -4.1146 -6.7950 25 6 1.8609 -2.3482 -5.2664 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6052 -1.7198 1.2952 30 1 3.1262 -0.7996 1.2056 31 1 2.9233 -1.8417 4.7318 32 1 1.6053 -1.7199 -1.2951 33 1 3.1262 -0.7997 -1.2055 34 1 3.3685 1.2778 -2.0103 35 1 1.8316 2.1909 -2.3383 36 1 3.5416 1.1747 -4.4539 37 1 1.7493 1.3948 -4.6577 38 1 -0.2582 0.0576 -4.2190 39 1 -1.7654 -1.1569 -5.7398 40 1 -0.9530 -3.1362 -6.9584 41 1 2.8795 -2.6821 -5.1336 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602485013.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:16 Heat of formation + Delta-G solvation = -21.112622 kcal Electronic energy + Delta-G solvation = -21024.563168 eV Core-core repulsion = 17818.402104 eV Total energy + Delta-G solvation = -3206.161064 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.87853 -41.43132 -39.32482 -36.95174 -34.39301 -32.48474 -31.34437 -30.43588 -28.59381 -26.87674 -26.23173 -24.14304 -23.64084 -23.04701 -20.73131 -20.36262 -18.55787 -18.35992 -17.39732 -17.01990 -16.68424 -16.58837 -16.39281 -16.15032 -15.64471 -15.35397 -14.73504 -14.38835 -14.33785 -14.22010 -13.57141 -13.48309 -13.37648 -13.05920 -12.81521 -12.74342 -12.71662 -12.37013 -12.23926 -12.17989 -12.03637 -11.79224 -11.63108 -11.38980 -11.07839 -10.85953 -10.54983 -9.92918 -9.70435 -9.53872 -8.18283 -6.27617 0.22240 0.28145 1.39512 1.40074 1.53088 2.41353 2.57475 3.03218 3.15296 3.35030 3.57807 3.74604 3.90042 4.00512 4.07932 4.16491 4.23991 4.35714 4.41353 4.47699 4.52239 4.57914 4.78739 4.82215 4.89104 4.93718 4.97291 4.99431 5.14966 5.18725 5.25698 5.28621 5.37837 5.43677 5.45965 5.50424 5.54844 5.67398 5.82200 5.87946 5.99661 6.11904 6.30201 6.88611 7.40967 8.94054 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027287 B = 0.003387 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.881897 B = 8264.536942 C = 8509.561603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.068 4.068 3 H 0.056 0.944 4 C 0.032 3.968 5 C -0.527 4.527 6 H 0.062 0.938 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.961 3.039 10 H -0.261 1.261 11 H -0.280 1.280 12 H -0.279 1.279 13 C 0.040 3.960 14 N -0.469 5.469 15 C -0.001 4.001 16 C -0.116 4.116 17 C 0.058 3.942 18 H 0.084 0.916 19 C -0.044 4.044 20 C -0.104 4.104 21 C -0.092 4.092 22 C -0.157 4.157 23 C 0.073 3.927 24 F -0.151 7.151 25 C -0.159 4.159 26 H 0.067 0.933 27 H 0.031 0.969 28 H 0.038 0.962 29 H -0.014 1.014 30 H -0.015 1.015 31 H 0.262 0.738 32 H 0.057 0.943 33 H 0.030 0.970 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.140 0.860 39 H 0.159 0.841 40 H 0.151 0.849 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.943 3.481 -21.981 22.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.087 4.087 3 H 0.074 0.926 4 C -0.005 4.005 5 C -0.565 4.565 6 H 0.080 0.920 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.786 3.214 10 H -0.184 1.184 11 H -0.206 1.206 12 H -0.205 1.205 13 C -0.088 4.088 14 N -0.191 5.191 15 C -0.130 4.130 16 C -0.154 4.154 17 C -0.051 4.051 18 H 0.102 0.898 19 C -0.045 4.045 20 C -0.122 4.122 21 C -0.110 4.110 22 C -0.176 4.176 23 C 0.054 3.946 24 F -0.130 7.130 25 C -0.178 4.178 26 H 0.086 0.914 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.005 0.995 30 H 0.003 0.997 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.048 0.952 34 H 0.084 0.916 35 H 0.114 0.886 36 H 0.108 0.892 37 H 0.121 0.879 38 H 0.158 0.842 39 H 0.176 0.824 40 H 0.169 0.831 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.563 3.346 -21.824 22.546 hybrid contribution 1.178 -0.599 1.285 1.843 sum -3.385 2.747 -20.539 20.997 Atomic orbital electron populations 1.21475 0.94749 1.00179 1.00553 1.20936 0.96611 0.98400 0.92734 0.92553 1.19025 0.93998 0.94580 0.92946 1.21655 1.34274 1.08545 0.92002 0.92029 1.25964 0.95258 0.96093 1.02702 1.70115 1.40414 1.22998 1.24210 0.85448 0.78081 0.78910 0.78935 1.18440 1.20616 1.20512 1.22523 0.97277 0.97642 0.91371 1.68498 1.46149 1.03783 1.00682 1.23868 0.97594 0.94896 0.96619 1.23375 1.03904 0.92151 0.95953 1.22431 0.94806 0.96526 0.91343 0.89818 1.19419 0.95125 0.94101 0.95824 1.21284 0.92636 1.00902 0.97425 1.21355 1.01064 0.93830 0.94734 1.21415 0.94062 0.99225 1.02908 1.17877 0.94351 0.86378 0.95980 1.91464 1.89874 1.52952 1.78738 1.21120 1.00915 0.96896 0.98873 0.91388 0.94945 0.94302 0.99547 0.99681 0.92970 0.92480 0.95190 0.91646 0.88623 0.89177 0.87901 0.84199 0.82357 0.83098 0.84621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.29 8.89 71.98 0.64 -3.65 16 2 C -0.07 -2.78 2.35 -10.79 -0.03 -2.80 16 3 H 0.06 2.28 7.41 -2.39 -0.02 2.27 16 4 C 0.03 1.70 4.45 29.85 0.13 1.84 16 5 C -0.53 -29.89 8.41 25.60 0.22 -29.68 16 6 H 0.06 3.36 7.05 -2.91 -0.02 3.34 16 7 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 8 N -0.94 -57.68 13.29 21.45 0.28 -57.39 16 9 Si 0.96 44.59 29.54 68.60 2.03 46.61 16 10 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 13 C 0.04 1.39 4.21 86.30 0.36 1.76 16 14 N -0.47 -12.55 4.90 -888.19 -4.35 -16.90 16 15 C 0.00 -0.03 7.03 86.41 0.61 0.58 16 16 C -0.12 -2.05 7.75 31.24 0.24 -1.81 16 17 C 0.06 1.30 3.51 44.27 0.16 1.46 16 18 H 0.08 1.92 7.76 -2.39 -0.02 1.90 16 19 C -0.04 -0.97 5.40 -19.87 -0.11 -1.08 16 20 C -0.10 -2.09 8.96 22.27 0.20 -1.89 16 21 C -0.09 -1.56 10.04 22.26 0.22 -1.33 16 22 C -0.16 -2.88 10.03 22.31 0.22 -2.66 16 23 C 0.07 1.63 7.30 22.38 0.16 1.79 16 24 F -0.15 -3.62 17.27 44.97 0.78 -2.85 16 25 C -0.16 -3.54 9.69 22.31 0.22 -3.33 16 26 H 0.07 2.22 7.75 -2.38 -0.02 2.20 16 27 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.04 1.58 6.95 -2.39 -0.02 1.56 16 29 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 30 H -0.02 -0.87 8.14 -2.38 -0.02 -0.89 16 31 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 32 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.03 1.05 7.69 -2.39 -0.02 1.03 16 34 H 0.07 1.59 7.78 -2.38 -0.02 1.57 16 35 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.10 1.61 7.76 -2.39 -0.02 1.59 16 38 H 0.14 2.72 7.78 -2.91 -0.02 2.70 16 39 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 40 H 0.15 2.08 8.06 -2.91 -0.02 2.05 16 41 H 0.14 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -65.24 339.05 3.44 -61.80 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: 0.99 Total: 9.25 kcal Atomic # 6 Polarization: -44.24 SS G_CDS: 3.71 Total: -40.52 kcal Atomic # 7 Polarization: -70.23 SS G_CDS: -4.07 Total: -74.29 kcal Atomic # 9 Polarization: -3.62 SS G_CDS: 0.78 Total: -2.85 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -65.24 3.44 -61.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602485013.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.689 kcal (2) G-P(sol) polarization free energy of solvation -65.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds