Wall clock time and date at job start Mon Mar 30 2020 02:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09006 * 109.47378 * 2 1 4 4 C 1.52998 * 109.47281 * 120.00154 * 2 1 3 5 5 C 1.50703 * 109.46962 * 294.99668 * 4 2 1 6 6 H 1.07998 * 119.99895 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99834 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99853 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 120.00265 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47340 * 89.99691 * 9 7 5 11 11 H 1.48501 * 109.47410 * 209.99860 * 9 7 5 12 12 H 1.48504 * 109.47062 * 329.99693 * 9 7 5 13 13 C 1.53003 * 109.47064 * 239.99757 * 2 1 3 14 14 N 1.46903 * 109.47220 * 174.65260 * 13 2 1 15 15 C 1.47478 * 111.00373 * 280.71477 * 14 13 2 16 16 C 1.53632 * 87.95048 * 221.34708 * 15 14 13 17 17 C 1.47478 * 111.00280 * 184.73754 * 14 13 2 18 18 H 1.09002 * 113.47354 * 23.88239 * 17 14 13 19 19 C 1.50700 * 113.47760 * 253.47808 * 17 14 13 20 20 C 1.38267 * 119.98489 * 321.07761 * 19 17 14 21 21 C 1.38227 * 120.05073 * 180.02562 * 20 19 17 22 22 C 1.38222 * 120.02128 * 359.72951 * 21 20 19 23 23 C 1.38438 * 119.97728 * 0.54806 * 22 21 20 24 24 F 1.35100 * 120.02569 * 179.72549 * 23 22 21 25 25 C 1.38178 * 119.98849 * 141.10358 * 19 17 14 26 26 H 1.08999 * 109.47701 * 65.34098 * 1 2 3 27 27 H 1.08997 * 109.47506 * 185.34272 * 1 2 3 28 28 H 1.09003 * 109.46920 * 305.34052 * 1 2 3 29 29 H 1.08996 * 109.47601 * 54.99731 * 4 2 1 30 30 H 1.09000 * 109.47502 * 175.00203 * 4 2 1 31 31 H 0.97010 * 120.00037 * 179.97438 * 8 7 5 32 32 H 1.09008 * 109.46700 * 54.65898 * 13 2 1 33 33 H 1.08998 * 109.47207 * 294.65923 * 13 2 1 34 34 H 1.08997 * 113.47488 * 336.06171 * 15 14 13 35 35 H 1.08995 * 113.47821 * 106.47034 * 15 14 13 36 36 H 1.09006 * 114.16930 * 272.34629 * 16 15 14 37 37 H 1.08999 * 114.20659 * 139.60785 * 16 15 14 38 38 H 1.07994 * 119.97603 * 0.02562 * 20 19 17 39 39 H 1.07999 * 119.98988 * 179.97438 * 21 20 19 40 40 H 1.08007 * 120.01133 * 180.29609 * 22 21 20 41 41 H 1.07997 * 120.01252 * 359.97438 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6413 0.0571 2.4766 6 1 1.0800 0.9742 2.3757 7 6 1.9924 -0.4022 3.7283 8 7 1.6441 0.2767 4.7994 9 14 2.9627 -1.9888 3.9028 10 1 4.4161 -1.6854 3.8791 11 1 2.6145 -2.6431 5.1897 12 1 2.6287 -2.8995 2.7783 13 6 2.0399 -0.7213 -1.2492 14 7 3.5033 -0.6106 -1.3156 15 6 3.9106 0.7095 -1.8317 16 6 4.9878 -0.0079 -2.6595 17 6 4.0216 -1.1971 -2.5654 18 1 3.2867 -1.2240 -3.3699 19 6 4.7152 -2.5200 -2.3654 20 6 5.5161 -2.7195 -1.2561 21 6 6.1533 -3.9322 -1.0715 22 6 5.9861 -4.9486 -1.9931 23 6 5.1891 -4.7480 -3.1071 24 9 5.0294 -5.7390 -4.0114 25 6 4.5511 -3.5328 -3.2909 26 1 -0.3634 0.4287 -0.9339 27 1 -0.3634 -1.0231 0.0957 28 1 -0.3633 0.5945 0.8383 29 1 1.6054 -1.7198 1.2952 30 1 3.1263 -0.7995 1.2056 31 1 1.8908 -0.0466 5.6801 32 1 1.6005 -0.2656 -2.1367 33 1 1.7568 -1.7729 -1.2027 34 1 3.1463 1.1923 -2.4407 35 1 4.3173 1.3689 -1.0651 36 1 5.9305 -0.1561 -2.1326 37 1 5.1132 0.3866 -3.6678 38 1 5.6438 -1.9274 -0.5332 39 1 6.7790 -4.0868 -0.2048 40 1 6.4803 -5.8977 -1.8462 41 1 3.9255 -3.3767 -4.1573 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602485014.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:19 Heat of formation + Delta-G solvation = 2.137533 kcal Electronic energy + Delta-G solvation = -21464.923688 eV Core-core repulsion = 18259.770827 eV Total energy + Delta-G solvation = -3205.152862 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.94820 -40.59909 -38.40873 -35.39727 -32.27948 -31.55393 -30.43958 -29.28077 -27.48750 -25.83902 -24.26016 -22.82128 -22.32180 -21.97710 -19.63137 -18.95883 -17.47842 -16.78228 -16.42388 -16.13934 -15.65792 -15.56679 -15.17057 -14.63730 -14.23539 -13.91512 -13.47914 -13.29038 -12.91511 -12.72319 -12.58530 -12.37346 -12.00897 -11.88086 -11.74236 -11.50485 -11.33888 -11.04325 -10.96946 -10.64575 -10.59577 -10.23382 -9.87809 -9.60723 -9.42560 -9.04648 -8.94990 -8.69203 -8.58536 -8.42064 -5.95508 -3.91138 1.11260 1.17121 3.37636 3.44452 3.49121 3.51399 4.03243 4.29771 4.43742 4.54414 4.65541 4.74243 4.94223 4.98847 5.20604 5.27030 5.29117 5.39325 5.39953 5.46154 5.58879 5.68621 5.76830 5.88650 5.94563 6.01864 6.04523 6.06267 6.18273 6.22165 6.30336 6.35756 6.48947 6.63191 6.85105 6.88044 6.97268 7.09752 7.31175 7.49634 7.64375 7.92173 8.64337 9.10280 9.68829 11.18159 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015972 B = 0.005300 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.645464 B = 5281.491372 C = 6211.585715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.071 4.071 3 H 0.061 0.939 4 C -0.001 4.001 5 C -0.512 4.512 6 H 0.070 0.930 7 C 0.065 3.935 8 N -0.909 5.909 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.292 1.292 12 H -0.265 1.265 13 C 0.026 3.974 14 N -0.450 5.450 15 C 0.000 4.000 16 C -0.135 4.135 17 C 0.058 3.942 18 H 0.083 0.917 19 C -0.036 4.036 20 C -0.096 4.096 21 C -0.095 4.095 22 C -0.157 4.157 23 C 0.089 3.911 24 F -0.145 7.145 25 C -0.150 4.150 26 H 0.030 0.970 27 H 0.045 0.955 28 H 0.066 0.934 29 H 0.009 0.991 30 H 0.025 0.975 31 H 0.260 0.740 32 H 0.031 0.969 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.139 0.861 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.206 -5.406 -17.979 20.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.089 4.089 3 H 0.079 0.921 4 C -0.038 4.038 5 C -0.550 4.550 6 H 0.088 0.912 7 C -0.135 4.135 8 N -0.549 5.549 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.218 1.218 12 H -0.190 1.190 13 C -0.103 4.103 14 N -0.171 5.171 15 C -0.129 4.129 16 C -0.173 4.173 17 C -0.052 4.052 18 H 0.101 0.899 19 C -0.037 4.037 20 C -0.114 4.114 21 C -0.113 4.113 22 C -0.176 4.176 23 C 0.070 3.930 24 F -0.124 7.124 25 C -0.170 4.170 26 H 0.049 0.951 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.027 0.973 30 H 0.043 0.957 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.109 0.891 36 H 0.113 0.887 37 H 0.093 0.907 38 H 0.157 0.843 39 H 0.150 0.850 40 H 0.149 0.851 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 8.387 -5.683 -17.150 19.919 hybrid contribution -0.090 -0.867 -0.599 1.058 sum 8.298 -6.550 -17.750 20.659 Atomic orbital electron populations 1.21702 0.95915 1.01377 1.00113 1.20943 0.94689 0.99197 0.94115 0.92066 1.19531 0.96646 0.95246 0.92427 1.21216 1.34965 1.09357 0.89432 0.91216 1.25002 0.95744 0.96848 0.95956 1.69927 1.47608 1.39389 0.97955 0.86802 0.80710 0.84688 0.77238 1.20375 1.21801 1.18979 1.22862 0.87636 1.01410 0.98357 1.68973 1.13048 1.06590 1.28517 1.23733 0.97184 0.93845 0.98145 1.23281 0.98174 0.95215 1.00616 1.22351 0.97058 0.91545 0.94208 0.89930 1.19448 0.96265 0.94103 0.93904 1.21203 0.95366 0.97788 0.97042 1.21084 0.99042 0.92676 0.98468 1.21126 1.00998 1.00930 0.94577 1.17618 1.00350 0.85914 0.89088 1.91477 1.94442 1.60366 1.66078 1.20975 1.02245 0.92259 1.01495 0.95086 0.93560 0.91466 0.97314 0.95655 0.92989 0.95037 0.91208 0.91448 0.89130 0.88655 0.90678 0.84296 0.85004 0.85109 0.85185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 8.91 37.15 0.33 -2.12 16 2 C -0.07 -1.37 2.43 -90.62 -0.22 -1.59 16 3 H 0.06 1.23 7.76 -51.93 -0.40 0.83 16 4 C 0.00 -0.03 3.46 -27.88 -0.10 -0.12 16 5 C -0.51 -14.55 9.03 -34.44 -0.31 -14.86 16 6 H 0.07 2.12 7.30 -52.49 -0.38 1.74 16 7 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 8 N -0.91 -28.37 13.96 55.43 0.77 -27.60 16 9 Si 0.88 22.34 27.47 -169.99 -4.67 17.67 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 12 H -0.27 -6.59 6.54 56.52 0.37 -6.22 16 13 C 0.03 0.41 4.14 -3.82 -0.02 0.39 16 14 N -0.45 -6.71 5.02 -237.72 -1.19 -7.90 16 15 C 0.00 0.00 7.19 -7.48 -0.05 -0.06 16 16 C -0.14 -1.40 7.92 -26.14 -0.21 -1.61 16 17 C 0.06 0.70 3.28 -72.59 -0.24 0.46 16 18 H 0.08 0.90 7.80 -51.93 -0.40 0.50 16 19 C -0.04 -0.46 5.38 -104.63 -0.56 -1.02 16 20 C -0.10 -1.25 8.90 -39.57 -0.35 -1.60 16 21 C -0.09 -1.11 10.04 -39.59 -0.40 -1.51 16 22 C -0.16 -1.81 10.03 -39.51 -0.40 -2.21 16 23 C 0.09 1.11 7.30 -39.42 -0.29 0.82 16 24 F -0.14 -1.84 17.27 2.25 0.04 -1.80 16 25 C -0.15 -1.81 9.69 -39.52 -0.38 -2.19 16 26 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.07 1.37 7.11 -51.93 -0.37 1.00 16 29 H 0.01 0.21 7.20 -51.93 -0.37 -0.16 16 30 H 0.03 0.62 7.06 -51.93 -0.37 0.25 16 31 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 32 H 0.03 0.44 7.56 -51.92 -0.39 0.05 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.07 0.77 7.62 -51.93 -0.40 0.37 16 35 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.09 0.99 7.73 -51.93 -0.40 0.59 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.14 1.91 7.84 -52.49 -0.41 1.50 16 39 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 40 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 41 H 0.13 1.33 8.05 -52.49 -0.42 0.91 16 LS Contribution 335.80 15.07 5.06 5.06 Total: -1.00 -31.23 335.80 -9.73 -40.96 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -6.45 Total: -0.96 kcal Atomic # 6 Polarization: -22.14 SS G_CDS: -3.29 Total: -25.43 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: -0.42 Total: -35.50 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.67 Total: 17.67 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.23 -9.73 -40.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602485014.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.094 kcal (2) G-P(sol) polarization free energy of solvation -31.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds