Wall clock time and date at job start Mon Mar 30 2020 02:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09006 * 109.47378 * 2 1 4 4 C 1.52998 * 109.47281 * 120.00154 * 2 1 3 5 5 C 1.50703 * 109.46962 * 294.99668 * 4 2 1 6 6 H 1.07998 * 119.99895 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99834 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99853 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 120.00265 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47340 * 89.99691 * 9 7 5 11 11 H 1.48501 * 109.47410 * 209.99860 * 9 7 5 12 12 H 1.48504 * 109.47062 * 329.99693 * 9 7 5 13 13 C 1.53003 * 109.47064 * 239.99757 * 2 1 3 14 14 N 1.46903 * 109.47220 * 174.65260 * 13 2 1 15 15 C 1.47478 * 111.00373 * 280.71477 * 14 13 2 16 16 C 1.53632 * 87.95048 * 221.34708 * 15 14 13 17 17 C 1.47478 * 111.00280 * 184.73754 * 14 13 2 18 18 H 1.09002 * 113.47354 * 23.88239 * 17 14 13 19 19 C 1.50700 * 113.47760 * 253.47808 * 17 14 13 20 20 C 1.38267 * 119.98489 * 321.07761 * 19 17 14 21 21 C 1.38227 * 120.05073 * 180.02562 * 20 19 17 22 22 C 1.38222 * 120.02128 * 359.72951 * 21 20 19 23 23 C 1.38438 * 119.97728 * 0.54806 * 22 21 20 24 24 F 1.35100 * 120.02569 * 179.72549 * 23 22 21 25 25 C 1.38178 * 119.98849 * 141.10358 * 19 17 14 26 26 H 1.08999 * 109.47701 * 65.34098 * 1 2 3 27 27 H 1.08997 * 109.47506 * 185.34272 * 1 2 3 28 28 H 1.09003 * 109.46920 * 305.34052 * 1 2 3 29 29 H 1.08996 * 109.47601 * 54.99731 * 4 2 1 30 30 H 1.09000 * 109.47502 * 175.00203 * 4 2 1 31 31 H 0.97010 * 120.00037 * 179.97438 * 8 7 5 32 32 H 1.09008 * 109.46700 * 54.65898 * 13 2 1 33 33 H 1.08998 * 109.47207 * 294.65923 * 13 2 1 34 34 H 1.08997 * 113.47488 * 336.06171 * 15 14 13 35 35 H 1.08995 * 113.47821 * 106.47034 * 15 14 13 36 36 H 1.09006 * 114.16930 * 272.34629 * 16 15 14 37 37 H 1.08999 * 114.20659 * 139.60785 * 16 15 14 38 38 H 1.07994 * 119.97603 * 0.02562 * 20 19 17 39 39 H 1.07999 * 119.98988 * 179.97438 * 21 20 19 40 40 H 1.08007 * 120.01133 * 180.29609 * 22 21 20 41 41 H 1.07997 * 120.01252 * 359.97438 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6413 0.0571 2.4766 6 1 1.0800 0.9742 2.3757 7 6 1.9924 -0.4022 3.7283 8 7 1.6441 0.2767 4.7994 9 14 2.9627 -1.9888 3.9028 10 1 4.4161 -1.6854 3.8791 11 1 2.6145 -2.6431 5.1897 12 1 2.6287 -2.8995 2.7783 13 6 2.0399 -0.7213 -1.2492 14 7 3.5033 -0.6106 -1.3156 15 6 3.9106 0.7095 -1.8317 16 6 4.9878 -0.0079 -2.6595 17 6 4.0216 -1.1971 -2.5654 18 1 3.2867 -1.2240 -3.3699 19 6 4.7152 -2.5200 -2.3654 20 6 5.5161 -2.7195 -1.2561 21 6 6.1533 -3.9322 -1.0715 22 6 5.9861 -4.9486 -1.9931 23 6 5.1891 -4.7480 -3.1071 24 9 5.0294 -5.7390 -4.0114 25 6 4.5511 -3.5328 -3.2909 26 1 -0.3634 0.4287 -0.9339 27 1 -0.3634 -1.0231 0.0957 28 1 -0.3633 0.5945 0.8383 29 1 1.6054 -1.7198 1.2952 30 1 3.1263 -0.7995 1.2056 31 1 1.8908 -0.0466 5.6801 32 1 1.6005 -0.2656 -2.1367 33 1 1.7568 -1.7729 -1.2027 34 1 3.1463 1.1923 -2.4407 35 1 4.3173 1.3689 -1.0651 36 1 5.9305 -0.1561 -2.1326 37 1 5.1132 0.3866 -3.6678 38 1 5.6438 -1.9274 -0.5332 39 1 6.7790 -4.0868 -0.2048 40 1 6.4803 -5.8977 -1.8462 41 1 3.9255 -3.3767 -4.1573 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602485014.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:19 Heat of formation + Delta-G solvation = -15.581273 kcal Electronic energy + Delta-G solvation = -21465.692033 eV Core-core repulsion = 18259.770827 eV Total energy + Delta-G solvation = -3205.921207 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.88494 -41.57564 -39.35639 -37.00474 -34.38679 -32.51873 -31.38133 -30.59091 -29.29207 -26.76514 -25.64789 -24.11620 -23.66252 -22.97448 -20.70187 -20.41960 -18.94054 -18.35474 -17.46262 -17.04694 -16.65660 -16.59595 -16.45556 -16.04232 -15.71817 -15.00252 -14.78276 -14.67850 -14.24745 -14.23419 -13.95901 -13.50137 -13.37809 -13.10102 -12.88783 -12.86147 -12.71382 -12.38180 -12.20876 -12.00288 -11.95541 -11.72174 -11.51661 -11.37665 -11.11259 -10.95345 -10.70255 -9.93238 -9.68864 -9.56092 -8.24522 -6.24730 0.20690 0.26316 1.35056 1.36354 1.49436 2.38930 2.57560 3.08952 3.11980 3.36112 3.54204 3.77001 3.88905 4.00816 4.06502 4.15559 4.24314 4.32927 4.39017 4.44765 4.51163 4.56682 4.68469 4.78959 4.85760 4.90812 4.94037 5.00668 5.11079 5.12635 5.15651 5.25196 5.34696 5.38661 5.42572 5.47309 5.58345 5.68670 5.75689 5.78479 5.97425 6.25420 6.37615 6.82881 7.38831 8.92396 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015972 B = 0.005300 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.645464 B = 5281.491372 C = 6211.585715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.068 4.068 3 H 0.050 0.950 4 C 0.008 3.992 5 C -0.515 4.515 6 H 0.034 0.966 7 C 0.004 3.996 8 N -0.955 5.955 9 Si 0.944 3.056 10 H -0.267 1.267 11 H -0.288 1.288 12 H -0.254 1.254 13 C 0.037 3.963 14 N -0.482 5.482 15 C -0.003 4.003 16 C -0.119 4.119 17 C 0.061 3.939 18 H 0.100 0.900 19 C -0.045 4.045 20 C -0.112 4.112 21 C -0.099 4.099 22 C -0.158 4.158 23 C 0.076 3.924 24 F -0.149 7.149 25 C -0.151 4.151 26 H 0.066 0.934 27 H 0.046 0.954 28 H 0.034 0.966 29 H 0.002 0.998 30 H 0.022 0.978 31 H 0.263 0.737 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.127 0.873 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.137 -6.721 -20.250 23.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.087 4.087 3 H 0.069 0.931 4 C -0.029 4.029 5 C -0.553 4.553 6 H 0.052 0.948 7 C -0.192 4.192 8 N -0.597 5.597 9 Si 0.769 3.231 10 H -0.192 1.192 11 H -0.214 1.214 12 H -0.178 1.178 13 C -0.091 4.091 14 N -0.204 5.204 15 C -0.132 4.132 16 C -0.157 4.157 17 C -0.047 4.047 18 H 0.118 0.882 19 C -0.046 4.046 20 C -0.130 4.130 21 C -0.117 4.117 22 C -0.177 4.177 23 C 0.057 3.943 24 F -0.127 7.127 25 C -0.170 4.170 26 H 0.085 0.915 27 H 0.065 0.935 28 H 0.053 0.947 29 H 0.020 0.980 30 H 0.040 0.960 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.110 0.890 37 H 0.120 0.880 38 H 0.145 0.855 39 H 0.167 0.833 40 H 0.168 0.832 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 9.321 -6.994 -19.441 22.666 hybrid contribution -0.407 -0.386 0.114 0.572 sum 8.915 -7.380 -19.327 22.527 Atomic orbital electron populations 1.21636 0.95271 1.01094 1.00675 1.20835 0.95292 0.98482 0.94046 0.93138 1.19406 0.96318 0.94543 0.92680 1.21557 1.33826 1.08463 0.91453 0.94809 1.25907 0.97067 1.00567 0.95636 1.70075 1.49449 1.41545 0.98618 0.85740 0.79518 0.80356 0.77503 1.19176 1.21380 1.17809 1.22645 0.88843 1.00470 0.97137 1.68933 1.12083 1.08438 1.30921 1.23792 0.98296 0.92911 0.98198 1.23217 0.97143 0.93716 1.01593 1.22427 0.97528 0.91588 0.93202 0.88179 1.19556 0.96414 0.94643 0.93971 1.21258 0.96302 0.98129 0.97325 1.21300 0.99003 0.92253 0.99109 1.21365 1.00597 1.01652 0.94059 1.17831 1.00917 0.86128 0.89429 1.91467 1.94521 1.60520 1.66239 1.21142 1.02158 0.91843 1.01876 0.91474 0.93488 0.94664 0.97990 0.95963 0.92830 0.92274 0.91902 0.89969 0.90740 0.89048 0.87956 0.85512 0.83332 0.83222 0.83501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.66 8.91 71.98 0.64 -4.02 16 2 C -0.07 -2.59 2.43 -10.80 -0.03 -2.62 16 3 H 0.05 2.02 7.76 -2.38 -0.02 2.01 16 4 C 0.01 0.38 3.46 29.85 0.10 0.48 16 5 C -0.51 -30.10 9.03 25.60 0.23 -29.86 16 6 H 0.03 2.16 7.30 -2.91 -0.02 2.14 16 7 C 0.00 0.24 5.47 84.65 0.46 0.70 16 8 N -0.95 -61.21 13.96 21.45 0.30 -60.91 16 9 Si 0.94 46.32 27.47 68.60 1.88 48.20 16 10 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 12 H -0.25 -11.91 6.54 99.48 0.65 -11.26 16 13 C 0.04 1.11 4.14 86.30 0.36 1.47 16 14 N -0.48 -13.46 5.02 -906.00 -4.55 -18.00 16 15 C 0.00 -0.08 7.19 83.62 0.60 0.52 16 16 C -0.12 -2.14 7.92 30.98 0.25 -1.90 16 17 C 0.06 1.31 3.28 41.44 0.14 1.44 16 18 H 0.10 1.79 7.80 -2.39 -0.02 1.77 16 19 C -0.05 -1.04 5.38 -19.87 -0.11 -1.15 16 20 C -0.11 -2.75 8.90 22.27 0.20 -2.55 16 21 C -0.10 -2.14 10.04 22.26 0.22 -1.91 16 22 C -0.16 -3.30 10.03 22.31 0.22 -3.07 16 23 C 0.08 1.73 7.30 22.37 0.16 1.89 16 24 F -0.15 -3.49 17.27 44.97 0.78 -2.72 16 25 C -0.15 -3.26 9.69 22.31 0.22 -3.04 16 26 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.03 1.46 7.11 -2.39 -0.02 1.45 16 29 H 0.00 0.09 7.20 -2.39 -0.02 0.07 16 30 H 0.02 1.08 7.06 -2.39 -0.02 1.06 16 31 H 0.26 15.79 8.31 -92.70 -0.77 15.02 16 32 H 0.06 1.43 7.56 -2.38 -0.02 1.42 16 33 H 0.06 1.95 8.14 -2.39 -0.02 1.94 16 34 H 0.08 1.62 7.62 -2.39 -0.02 1.60 16 35 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.09 1.73 7.73 -2.38 -0.02 1.71 16 37 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.13 3.39 7.84 -2.91 -0.02 3.37 16 39 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 40 H 0.15 2.46 8.06 -2.91 -0.02 2.43 16 41 H 0.15 2.57 8.05 -2.91 -0.02 2.54 16 Total: -1.00 -68.47 335.80 3.03 -65.44 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 0.94 Total: 11.60 kcal Atomic # 6 Polarization: -47.29 SS G_CDS: 3.67 Total: -43.62 kcal Atomic # 7 Polarization: -74.67 SS G_CDS: -4.25 Total: -78.91 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.78 Total: -2.72 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.88 Total: 48.20 kcal Total: -68.47 3.03 -65.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602485014.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.858 kcal (2) G-P(sol) polarization free energy of solvation -68.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds