Wall clock time and date at job start Mon Mar 30 2020 02:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47670 * 2 1 4 4 C 1.53004 * 109.46877 * 119.99652 * 2 1 3 5 5 C 1.50706 * 109.47189 * 294.99865 * 4 2 1 6 6 H 1.08002 * 119.99702 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00157 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00254 * 179.72755 * 7 5 4 9 9 Si 1.86800 * 120.00122 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47115 * 269.73088 * 9 7 5 11 11 H 1.48500 * 109.46993 * 29.72646 * 9 7 5 12 12 H 1.48497 * 109.47374 * 149.72715 * 9 7 5 13 13 C 1.52998 * 109.47172 * 239.99300 * 2 1 3 14 14 N 1.46499 * 109.46967 * 65.00519 * 13 2 1 15 15 C 1.39676 * 119.99835 * 180.02562 * 14 13 2 16 16 C 1.38977 * 120.03850 * 359.71976 * 15 14 13 17 17 C 1.38134 * 120.06149 * 179.78999 * 16 15 14 18 18 C 1.38186 * 120.14206 * 0.46727 * 17 16 15 19 19 C 1.38907 * 120.08068 * 359.78823 * 18 17 16 20 20 N 1.39935 * 120.03394 * 180.02562 * 19 18 17 21 21 C 1.34770 * 120.00232 * 213.28608 * 20 19 18 22 22 N 1.34778 * 120.00529 * 185.31941 * 21 20 19 23 23 O 1.21592 * 119.99922 * 5.31646 * 21 20 19 24 24 C 1.38754 * 119.93331 * 359.97438 * 19 18 17 25 25 H 1.08992 * 109.47270 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47261 * 300.00965 * 1 2 3 27 27 H 1.08997 * 109.47082 * 60.00258 * 1 2 3 28 28 H 1.09004 * 109.47135 * 175.00108 * 4 2 1 29 29 H 1.08995 * 109.47366 * 55.00120 * 4 2 1 30 30 H 0.97003 * 120.00429 * 180.27366 * 8 7 5 31 31 H 1.09000 * 109.46791 * 185.00230 * 13 2 1 32 32 H 1.08997 * 109.47060 * 305.00283 * 13 2 1 33 33 H 0.97002 * 119.99833 * 359.97438 * 14 13 2 34 34 H 1.07993 * 119.97199 * 0.02562 * 16 15 14 35 35 H 1.07995 * 119.92700 * 180.21103 * 17 16 15 36 36 H 1.08004 * 119.96337 * 179.76630 * 18 17 16 37 37 H 0.97003 * 119.99658 * 33.28782 * 20 19 18 38 38 H 0.96998 * 119.99609 * 359.97438 * 22 21 20 39 39 H 0.96994 * 120.00219 * 180.02562 * 22 21 20 40 40 H 1.07997 * 120.06871 * 180.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0572 2.4767 6 1 1.0799 0.9743 2.3757 7 6 1.9931 -0.4014 3.7283 8 7 1.6498 0.2806 4.7991 9 14 2.9634 -1.9881 3.9030 10 1 2.0241 -3.1316 4.0270 11 1 3.8200 -2.1788 2.7052 12 1 3.8173 -1.9152 5.1158 13 6 2.0400 -0.7214 -1.2491 14 7 1.6525 0.0352 -2.4423 15 6 2.0081 -0.4303 -3.7103 16 6 2.7345 -1.6079 -3.8407 17 6 3.0828 -2.0709 -5.0947 18 6 2.7187 -1.3603 -6.2225 19 6 1.9972 -0.1798 -6.0988 20 7 1.6285 0.5387 -7.2416 21 6 1.5615 1.8841 -7.1993 22 7 1.1040 2.5700 -8.2655 23 8 1.9139 2.4792 -6.1992 24 6 1.6414 0.2857 -4.8411 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5140 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 3.1263 -0.7994 1.2057 29 1 1.6053 -1.7197 1.2953 30 1 1.9008 -0.0399 5.6795 31 1 3.1263 -0.7996 -1.2054 32 1 1.6053 -1.7199 -1.2949 33 1 1.1484 0.8589 -2.3518 34 1 3.0238 -2.1636 -2.9610 35 1 3.6443 -2.9881 -5.1936 36 1 2.9957 -1.7230 -7.2014 37 1 1.4211 0.0684 -8.0643 38 1 0.8232 2.0953 -9.0634 39 1 1.0562 3.5383 -8.2351 40 1 1.0801 1.2031 -4.7424 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602488929.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:58 Heat of formation + Delta-G solvation = -15.230822 kcal Electronic energy + Delta-G solvation = -20632.991573 eV Core-core repulsion = 17447.005524 eV Total energy + Delta-G solvation = -3185.986049 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.69760 -38.93583 -36.83465 -34.97864 -34.06211 -33.41414 -32.05112 -29.80148 -28.70767 -27.33202 -25.71338 -23.41725 -22.57269 -21.74172 -20.68171 -19.32042 -18.59274 -18.12597 -16.93032 -16.68819 -15.94296 -15.74261 -15.20539 -14.84666 -14.62138 -14.54394 -14.09738 -13.49163 -13.40430 -13.20395 -12.95503 -12.37077 -12.24927 -11.78257 -11.52935 -11.46599 -11.07199 -10.95668 -10.62795 -10.49712 -10.33733 -10.02472 -9.96036 -9.76510 -9.63891 -9.56530 -9.10837 -8.53268 -8.17589 -7.17319 -6.03435 -4.01244 1.47622 1.73236 2.52680 2.91295 3.31350 3.39158 3.42373 3.72638 4.03128 4.13020 4.45824 5.01679 5.25701 5.29774 5.39549 5.44002 5.57011 5.61910 5.68144 5.78514 5.85701 6.11611 6.15572 6.30497 6.32911 6.37658 6.46406 6.54771 6.62857 6.67655 6.71939 6.86039 7.01585 7.04047 7.23044 7.39556 7.56798 7.60970 7.79783 8.00397 8.26868 8.54265 9.01218 9.58825 11.09846 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030371 B = 0.003155 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.724190 B = 8872.810430 C = 9550.478150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.088 4.088 3 H 0.068 0.932 4 C -0.006 4.006 5 C -0.516 4.516 6 H 0.074 0.926 7 C 0.066 3.934 8 N -0.904 5.904 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.265 1.265 12 H -0.288 1.288 13 C 0.124 3.876 14 N -0.737 5.737 15 C 0.243 3.757 16 C -0.215 4.215 17 C -0.052 4.052 18 C -0.217 4.217 19 C 0.204 3.796 20 N -0.684 5.684 21 C 0.702 3.298 22 N -0.865 5.865 23 O -0.570 6.570 24 C -0.203 4.203 25 H 0.046 0.954 26 H 0.068 0.932 27 H 0.033 0.967 28 H 0.017 0.983 29 H 0.014 0.986 30 H 0.263 0.737 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.400 0.600 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.116 0.884 37 H 0.405 0.595 38 H 0.397 0.603 39 H 0.417 0.583 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.940 -2.294 -28.381 28.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.107 4.107 3 H 0.087 0.913 4 C -0.044 4.044 5 C -0.553 4.553 6 H 0.092 0.908 7 C -0.135 4.135 8 N -0.543 5.543 9 Si 0.706 3.294 10 H -0.203 1.203 11 H -0.190 1.190 12 H -0.214 1.214 13 C 0.000 4.000 14 N -0.364 5.364 15 C 0.136 3.864 16 C -0.239 4.239 17 C -0.072 4.072 18 C -0.239 4.239 19 C 0.109 3.891 20 N -0.332 5.332 21 C 0.400 3.600 22 N -0.433 5.433 23 O -0.445 6.445 24 C -0.228 4.228 25 H 0.065 0.935 26 H 0.087 0.913 27 H 0.052 0.948 28 H 0.036 0.964 29 H 0.032 0.968 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.235 0.765 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.134 0.866 37 H 0.240 0.760 38 H 0.225 0.775 39 H 0.250 0.750 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.560 -1.996 -27.096 27.175 hybrid contribution 0.057 -0.529 -0.560 0.773 sum -0.503 -2.525 -27.656 27.776 Atomic orbital electron populations 1.21728 0.95496 1.01125 1.00741 1.21248 0.95988 0.99990 0.93462 0.91311 1.19568 0.96079 0.95838 0.92897 1.21095 1.35575 1.09624 0.89051 0.90827 1.25023 0.95594 0.97006 0.95915 1.69912 1.47073 1.39255 0.98071 0.86799 0.80641 0.84217 0.77753 1.20346 1.18967 1.21449 1.21644 0.99057 0.95158 0.84104 1.44976 1.60971 1.27968 1.02469 1.17693 0.91539 0.91861 0.85326 1.20677 1.06790 0.98287 0.98110 1.20592 0.96944 0.98237 0.91410 1.20444 1.06357 0.98222 0.98917 1.17083 0.95285 0.91663 0.85115 1.42548 1.71910 1.05042 1.13724 1.15987 0.78450 0.81638 0.83875 1.42986 1.71998 1.11267 1.17089 1.91044 1.53650 1.68124 1.31681 1.20448 1.09044 1.03267 0.90030 0.93535 0.91278 0.94816 0.96444 0.96800 0.92765 0.92533 0.92561 0.76530 0.85984 0.86068 0.86631 0.75997 0.77545 0.75029 0.85118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 8.88 37.16 0.33 -2.11 16 2 C -0.09 -1.69 2.37 -90.62 -0.22 -1.91 16 3 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 4 C -0.01 -0.14 3.52 -27.88 -0.10 -0.24 16 5 C -0.52 -14.42 8.96 -34.44 -0.31 -14.73 16 6 H 0.07 2.21 7.30 -52.49 -0.38 1.83 16 7 C 0.07 1.90 5.47 -17.82 -0.10 1.81 16 8 N -0.90 -27.87 13.96 55.43 0.77 -27.10 16 9 Si 0.88 21.67 27.47 -169.99 -4.67 17.00 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 11 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 C 0.12 2.04 4.30 -4.04 -0.02 2.02 16 14 N -0.74 -11.27 5.46 -58.66 -0.32 -11.60 16 15 C 0.24 3.62 6.65 -83.81 -0.56 3.07 16 16 C -0.22 -2.94 9.31 -39.35 -0.37 -3.31 16 17 C -0.05 -0.61 10.03 -39.64 -0.40 -1.00 16 18 C -0.22 -2.36 9.96 -39.35 -0.39 -2.76 16 19 C 0.20 2.50 6.28 -83.72 -0.53 1.97 16 20 N -0.68 -6.19 5.35 -14.24 -0.08 -6.26 16 21 C 0.70 7.44 8.57 -86.92 -0.75 6.69 16 22 N -0.86 -4.70 8.88 27.63 0.25 -4.45 16 23 O -0.57 -8.97 14.87 5.28 0.08 -8.90 16 24 C -0.20 -2.96 8.50 -39.19 -0.33 -3.29 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.07 1.41 6.95 -51.93 -0.36 1.05 16 27 H 0.03 0.53 7.18 -51.93 -0.37 0.16 16 28 H 0.02 0.41 7.20 -51.93 -0.37 0.03 16 29 H 0.01 0.32 7.57 -51.93 -0.39 -0.08 16 30 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 31 H 0.06 0.94 7.94 -51.93 -0.41 0.52 16 32 H 0.06 0.90 7.96 -51.93 -0.41 0.48 16 33 H 0.40 5.95 7.66 -40.82 -0.31 5.64 16 34 H 0.12 1.62 6.72 -52.49 -0.35 1.27 16 35 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 37 H 0.41 2.03 8.83 -40.82 -0.36 1.67 16 38 H 0.40 0.73 8.85 -40.82 -0.36 0.37 16 39 H 0.42 1.96 8.93 -40.82 -0.36 1.59 16 40 H 0.13 2.06 6.41 -52.49 -0.34 1.72 16 LS Contribution 329.73 15.07 4.97 4.97 Total: -1.00 -34.58 329.73 -8.38 -42.96 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -5.66 Total: 7.17 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -3.72 Total: -13.79 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: 0.62 Total: -49.41 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.08 Total: -8.90 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.58 -8.38 -42.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602488929.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.726 kcal (2) G-P(sol) polarization free energy of solvation -34.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds