Wall clock time and date at job start Mon Mar 30 2020 02:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47655 * 2 1 4 4 C 1.53002 * 109.47197 * 239.99948 * 2 1 3 5 5 C 1.50699 * 109.46835 * 65.00168 * 4 2 1 6 6 H 1.07995 * 120.00496 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99682 * 180.02562 * 5 4 2 8 8 N 1.31520 * 120.00458 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99804 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47144 * 89.99868 * 9 7 5 11 11 H 1.48503 * 109.46944 * 209.99846 * 9 7 5 12 12 H 1.48500 * 109.47198 * 329.99489 * 9 7 5 13 13 C 1.52999 * 109.46772 * 120.00332 * 2 1 3 14 14 N 1.46497 * 109.47338 * 294.99635 * 13 2 1 15 15 C 1.39671 * 120.00233 * 180.02562 * 14 13 2 16 16 C 1.38977 * 120.03944 * 359.72186 * 15 14 13 17 17 C 1.38132 * 120.06271 * 179.78887 * 16 15 14 18 18 C 1.38189 * 120.14455 * 0.47138 * 17 16 15 19 19 C 1.38903 * 120.07535 * 359.78534 * 18 17 16 20 20 N 1.39944 * 120.02929 * 180.02562 * 19 18 17 21 21 C 1.34778 * 119.99683 * 213.28363 * 20 19 18 22 22 N 1.34770 * 120.00277 * 185.31009 * 21 20 19 23 23 O 1.21591 * 120.00191 * 5.31814 * 21 20 19 24 24 C 1.38754 * 119.93823 * 359.97438 * 19 18 17 25 25 H 1.09006 * 109.46926 * 59.99818 * 1 2 3 26 26 H 1.09000 * 109.47689 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47116 * 300.00064 * 1 2 3 28 28 H 1.09003 * 109.47043 * 185.00475 * 4 2 1 29 29 H 1.09006 * 109.47191 * 305.00241 * 4 2 1 30 30 H 0.97000 * 120.00359 * 180.02562 * 8 7 5 31 31 H 1.09004 * 109.47762 * 54.99970 * 13 2 1 32 32 H 1.08999 * 109.47129 * 174.99512 * 13 2 1 33 33 H 0.96999 * 119.99816 * 0.02562 * 14 13 2 34 34 H 1.08000 * 119.96880 * 0.02562 * 16 15 14 35 35 H 1.08000 * 119.92650 * 180.21374 * 17 16 15 36 36 H 1.07994 * 119.96070 * 179.76901 * 18 17 16 37 37 H 0.96995 * 120.00510 * 33.27886 * 20 19 18 38 38 H 0.97007 * 119.99757 * 0.02562 * 22 21 20 39 39 H 0.97001 * 120.00549 * 179.97438 * 22 21 20 40 40 H 1.07989 * 120.06893 * 180.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0571 -2.4765 6 1 1.0807 0.9746 -2.3757 7 6 1.9924 -0.4022 -3.7283 8 7 2.6755 -1.5193 -3.8512 9 14 1.4988 0.5629 -5.2496 10 1 2.5649 1.5417 -5.5823 11 1 1.3110 -0.3709 -6.3889 12 1 0.2281 1.2852 -4.9870 13 6 2.0399 -0.7213 1.2492 14 7 1.6524 0.0352 2.4424 15 6 2.0088 -0.4296 3.7103 16 6 2.7261 -1.6127 3.8414 17 6 3.0826 -2.0705 5.0949 18 6 2.7192 -1.3595 6.2227 19 6 1.9977 -0.1790 6.0988 20 7 1.6307 0.5406 7.2416 21 6 0.4690 1.2238 7.2635 22 7 0.1651 2.0026 8.3205 23 8 -0.3048 1.1373 6.3296 24 6 1.6421 0.2865 4.8410 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 3.1263 -0.7995 -1.2055 29 1 1.6053 -1.7199 -1.2952 30 1 2.9228 -1.8422 -4.7318 31 1 1.6053 -1.7199 1.2952 32 1 3.1262 -0.7997 1.2056 33 1 1.1482 0.8589 2.3518 34 1 3.0083 -2.1727 2.9621 35 1 3.6430 -2.9884 5.1940 36 1 2.9963 -1.7221 7.2015 37 1 2.2121 0.5477 8.0179 38 1 0.7825 2.0717 9.0655 39 1 -0.6708 2.4945 8.3361 40 1 1.0815 1.2042 4.7423 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602488930.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:01 Heat of formation + Delta-G solvation = -19.011317 kcal Electronic energy + Delta-G solvation = -20587.509112 eV Core-core repulsion = 17401.359129 eV Total energy + Delta-G solvation = -3186.149983 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.66028 -38.87720 -36.72557 -34.91225 -34.02678 -33.38038 -32.00783 -29.69392 -28.55155 -26.81636 -25.64034 -23.40885 -22.81581 -21.72219 -20.69561 -19.27828 -18.54879 -18.09301 -16.71799 -16.46358 -15.88065 -15.66148 -15.12001 -14.75704 -14.60969 -14.39452 -14.35443 -13.50757 -13.33963 -13.04768 -12.62668 -12.41387 -11.99347 -11.61931 -11.39411 -11.37966 -10.92045 -10.89973 -10.61048 -10.37162 -10.36074 -10.22958 -9.99786 -9.87979 -9.54601 -9.26930 -9.02525 -8.35212 -8.12565 -7.10295 -5.99921 -4.01519 1.53132 1.79066 2.55872 2.94303 3.32245 3.38717 3.41775 3.79975 4.08616 4.16517 4.46670 5.07733 5.30801 5.36004 5.46546 5.55747 5.63201 5.71990 5.76134 5.84886 5.98298 6.17986 6.26887 6.36605 6.43062 6.48689 6.50188 6.60125 6.68086 6.73093 6.88610 7.04934 7.06865 7.11918 7.59911 7.64528 7.68792 7.78909 7.99128 8.07503 8.29587 8.41942 9.04226 9.62110 11.11534 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031420 B = 0.002996 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.949448 B = 9343.963600 C =10071.389790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.096 4.096 3 H 0.061 0.939 4 C 0.030 3.970 5 C -0.515 4.515 6 H 0.056 0.944 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.126 3.874 14 N -0.737 5.737 15 C 0.243 3.757 16 C -0.214 4.214 17 C -0.052 4.052 18 C -0.217 4.217 19 C 0.203 3.797 20 N -0.684 5.684 21 C 0.702 3.298 22 N -0.865 5.865 23 O -0.570 6.570 24 C -0.204 4.204 25 H 0.063 0.937 26 H 0.046 0.954 27 H 0.031 0.969 28 H 0.017 0.983 29 H 0.019 0.981 30 H 0.260 0.740 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.398 0.602 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.115 0.885 37 H 0.405 0.595 38 H 0.397 0.603 39 H 0.417 0.583 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.068 3.677 25.713 25.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.115 4.115 3 H 0.080 0.920 4 C -0.007 4.007 5 C -0.554 4.554 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.002 3.998 14 N -0.364 5.364 15 C 0.136 3.864 16 C -0.238 4.238 17 C -0.072 4.072 18 C -0.240 4.240 19 C 0.108 3.892 20 N -0.332 5.332 21 C 0.400 3.600 22 N -0.434 5.434 23 O -0.445 6.445 24 C -0.229 4.229 25 H 0.082 0.918 26 H 0.065 0.935 27 H 0.050 0.950 28 H 0.036 0.964 29 H 0.037 0.963 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.233 0.767 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.133 0.867 37 H 0.240 0.760 38 H 0.224 0.776 39 H 0.249 0.751 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.520 3.310 24.541 24.768 hybrid contribution -0.183 1.021 -0.113 1.043 sum -0.702 4.331 24.428 24.818 Atomic orbital electron populations 1.21725 0.95896 1.01138 1.00233 1.21439 0.95684 0.99781 0.94589 0.92009 1.19082 0.96239 0.95560 0.89847 1.21201 1.34913 1.08313 0.90931 0.92559 1.25014 0.95279 0.95070 0.99114 1.69961 1.38921 1.21132 1.23486 0.86616 0.78917 0.79800 0.82802 1.20723 1.21263 1.19907 1.21639 0.99041 0.95205 0.83865 1.45029 1.60767 1.28003 1.02586 1.17705 0.91336 0.92032 0.85342 1.20704 1.06689 0.98180 0.98197 1.20600 0.96973 0.98178 0.91421 1.20434 1.08862 0.95890 0.98836 1.17080 0.96563 0.90762 0.84821 1.42547 1.21554 1.51906 1.17191 1.15987 0.81733 0.79000 0.83230 1.42988 1.26509 1.52060 1.21813 1.91039 1.49728 1.67560 1.36222 1.20435 1.09214 1.03453 0.89807 0.91818 0.93459 0.94984 0.96445 0.96277 0.93014 0.92554 0.92484 0.76697 0.85857 0.86047 0.86670 0.76017 0.77551 0.75067 0.85200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 8.88 37.16 0.33 -2.19 16 2 C -0.10 -1.93 2.37 -90.62 -0.22 -2.14 16 3 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 4 C 0.03 0.76 4.45 -27.88 -0.12 0.64 16 5 C -0.52 -14.29 8.41 -34.44 -0.29 -14.58 16 6 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -26.77 13.29 55.43 0.74 -26.03 16 9 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 13 C 0.13 2.20 4.30 -4.04 -0.02 2.18 16 14 N -0.74 -11.77 5.46 -58.66 -0.32 -12.09 16 15 C 0.24 3.77 6.65 -83.82 -0.56 3.22 16 16 C -0.21 -3.08 9.31 -39.35 -0.37 -3.45 16 17 C -0.05 -0.63 10.03 -39.64 -0.40 -1.03 16 18 C -0.22 -2.47 9.96 -39.35 -0.39 -2.86 16 19 C 0.20 2.57 6.28 -83.72 -0.53 2.04 16 20 N -0.68 -6.39 5.35 -14.24 -0.08 -6.46 16 21 C 0.70 7.59 8.57 -86.92 -0.75 6.84 16 22 N -0.87 -4.84 8.88 27.63 0.25 -4.59 16 23 O -0.57 -9.08 14.87 5.29 0.08 -9.00 16 24 C -0.20 -3.07 8.50 -39.19 -0.33 -3.40 16 25 H 0.06 1.29 6.95 -51.93 -0.36 0.93 16 26 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.03 0.53 7.18 -51.93 -0.37 0.16 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.06 0.99 7.94 -51.93 -0.41 0.58 16 32 H 0.06 1.00 7.96 -51.93 -0.41 0.59 16 33 H 0.40 6.14 7.66 -40.82 -0.31 5.83 16 34 H 0.12 1.76 6.72 -52.49 -0.35 1.40 16 35 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 36 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.40 2.15 8.83 -40.82 -0.36 1.79 16 38 H 0.40 0.80 8.85 -40.82 -0.36 0.44 16 39 H 0.42 2.01 8.93 -40.82 -0.36 1.64 16 40 H 0.13 2.10 6.41 -52.49 -0.34 1.76 16 LS Contribution 333.34 15.07 5.02 5.02 Total: -1.00 -33.97 333.34 -8.75 -42.73 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -5.69 Total: 7.02 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: -3.73 Total: -13.23 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: 0.59 Total: -49.18 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.08 Total: -9.00 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.97 -8.75 -42.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602488930.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.716 kcal (2) G-P(sol) polarization free energy of solvation -33.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds