Wall clock time and date at job start Mon Mar 30 2020 02:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47655 * 2 1 4 4 C 1.53002 * 109.47197 * 239.99948 * 2 1 3 5 5 C 1.50699 * 109.46835 * 65.00168 * 4 2 1 6 6 H 1.07995 * 120.00496 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99682 * 180.02562 * 5 4 2 8 8 N 1.31520 * 120.00458 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99804 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47144 * 89.99868 * 9 7 5 11 11 H 1.48503 * 109.46944 * 209.99846 * 9 7 5 12 12 H 1.48500 * 109.47198 * 329.99489 * 9 7 5 13 13 C 1.52999 * 109.46772 * 120.00332 * 2 1 3 14 14 N 1.46497 * 109.47338 * 294.99635 * 13 2 1 15 15 C 1.39671 * 120.00233 * 180.02562 * 14 13 2 16 16 C 1.38977 * 120.03944 * 359.72186 * 15 14 13 17 17 C 1.38132 * 120.06271 * 179.78887 * 16 15 14 18 18 C 1.38189 * 120.14455 * 0.47138 * 17 16 15 19 19 C 1.38903 * 120.07535 * 359.78534 * 18 17 16 20 20 N 1.39944 * 120.02929 * 180.02562 * 19 18 17 21 21 C 1.34778 * 119.99683 * 213.28363 * 20 19 18 22 22 N 1.34770 * 120.00277 * 185.31009 * 21 20 19 23 23 O 1.21591 * 120.00191 * 5.31814 * 21 20 19 24 24 C 1.38754 * 119.93823 * 359.97438 * 19 18 17 25 25 H 1.09006 * 109.46926 * 59.99818 * 1 2 3 26 26 H 1.09000 * 109.47689 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47116 * 300.00064 * 1 2 3 28 28 H 1.09003 * 109.47043 * 185.00475 * 4 2 1 29 29 H 1.09006 * 109.47191 * 305.00241 * 4 2 1 30 30 H 0.97000 * 120.00359 * 180.02562 * 8 7 5 31 31 H 1.09004 * 109.47762 * 54.99970 * 13 2 1 32 32 H 1.08999 * 109.47129 * 174.99512 * 13 2 1 33 33 H 0.96999 * 119.99816 * 0.02562 * 14 13 2 34 34 H 1.08000 * 119.96880 * 0.02562 * 16 15 14 35 35 H 1.08000 * 119.92650 * 180.21374 * 17 16 15 36 36 H 1.07994 * 119.96070 * 179.76901 * 18 17 16 37 37 H 0.96995 * 120.00510 * 33.27886 * 20 19 18 38 38 H 0.97007 * 119.99757 * 0.02562 * 22 21 20 39 39 H 0.97001 * 120.00549 * 179.97438 * 22 21 20 40 40 H 1.07989 * 120.06893 * 180.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0571 -2.4765 6 1 1.0807 0.9746 -2.3757 7 6 1.9924 -0.4022 -3.7283 8 7 2.6755 -1.5193 -3.8512 9 14 1.4988 0.5629 -5.2496 10 1 2.5649 1.5417 -5.5823 11 1 1.3110 -0.3709 -6.3889 12 1 0.2281 1.2852 -4.9870 13 6 2.0399 -0.7213 1.2492 14 7 1.6524 0.0352 2.4424 15 6 2.0088 -0.4296 3.7103 16 6 2.7261 -1.6127 3.8414 17 6 3.0826 -2.0705 5.0949 18 6 2.7192 -1.3595 6.2227 19 6 1.9977 -0.1790 6.0988 20 7 1.6307 0.5406 7.2416 21 6 0.4690 1.2238 7.2635 22 7 0.1651 2.0026 8.3205 23 8 -0.3048 1.1373 6.3296 24 6 1.6421 0.2865 4.8410 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 3.1263 -0.7995 -1.2055 29 1 1.6053 -1.7199 -1.2952 30 1 2.9228 -1.8422 -4.7318 31 1 1.6053 -1.7199 1.2952 32 1 3.1262 -0.7997 1.2056 33 1 1.1482 0.8589 2.3518 34 1 3.0083 -2.1727 2.9621 35 1 3.6430 -2.9884 5.1940 36 1 2.9963 -1.7221 7.2015 37 1 2.2121 0.5477 8.0179 38 1 0.7825 2.0717 9.0655 39 1 -0.6708 2.4945 8.3361 40 1 1.0815 1.2042 4.7423 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602488930.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:00 Heat of formation + Delta-G solvation = -44.044176 kcal Electronic energy + Delta-G solvation = -20588.594619 eV Core-core repulsion = 17401.359129 eV Total energy + Delta-G solvation = -3187.235489 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.54596 -39.93076 -38.12170 -36.13978 -35.13882 -34.48744 -33.75417 -30.83963 -29.71383 -28.65600 -27.12139 -24.88304 -24.16835 -22.72096 -21.74809 -20.83931 -19.39566 -18.97019 -18.52927 -17.60170 -16.96087 -16.72422 -16.49327 -16.14446 -15.97229 -15.64236 -15.42588 -14.74022 -14.50840 -14.30877 -14.27625 -14.10177 -13.45842 -13.37668 -12.81622 -12.73311 -12.49013 -12.41408 -12.25647 -12.03400 -11.81563 -11.50885 -11.24987 -11.17896 -11.04059 -10.73982 -10.61533 -10.53979 -9.10268 -8.25345 -8.18211 -6.27222 0.50645 0.77050 1.40337 1.41012 1.51908 1.81991 2.09808 2.40598 2.59585 3.07112 3.15589 3.57372 4.02919 4.13327 4.17231 4.34356 4.40023 4.45355 4.64950 4.71422 4.75205 4.79191 4.89831 4.93586 5.19646 5.29064 5.37122 5.41663 5.43929 5.51334 5.53139 5.71307 5.75534 5.85706 5.91863 5.96966 6.08373 6.26495 6.50205 6.85479 6.89006 7.01520 7.40928 7.57330 8.93875 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031420 B = 0.002996 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.949448 B = 9343.963600 C =10071.389790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.085 4.085 3 H 0.061 0.939 4 C 0.036 3.964 5 C -0.531 4.531 6 H 0.061 0.939 7 C -0.001 4.001 8 N -0.933 5.933 9 Si 0.960 3.040 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.264 1.264 13 C 0.144 3.856 14 N -0.741 5.741 15 C 0.221 3.779 16 C -0.233 4.233 17 C -0.050 4.050 18 C -0.205 4.205 19 C 0.199 3.801 20 N -0.670 5.670 21 C 0.695 3.305 22 N -0.839 5.839 23 O -0.626 6.626 24 C -0.221 4.221 25 H 0.049 0.951 26 H 0.042 0.958 27 H 0.056 0.944 28 H -0.007 1.007 29 H -0.005 1.005 30 H 0.263 0.737 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.399 0.601 34 H 0.117 0.883 35 H 0.151 0.849 36 H 0.153 0.847 37 H 0.427 0.573 38 H 0.417 0.583 39 H 0.423 0.577 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.014 4.261 28.023 28.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.104 4.104 3 H 0.080 0.920 4 C -0.002 4.002 5 C -0.569 4.569 6 H 0.079 0.921 7 C -0.198 4.198 8 N -0.574 5.574 9 Si 0.785 3.215 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.189 1.189 13 C 0.020 3.980 14 N -0.369 5.369 15 C 0.116 3.884 16 C -0.256 4.256 17 C -0.070 4.070 18 C -0.227 4.227 19 C 0.103 3.897 20 N -0.319 5.319 21 C 0.394 3.606 22 N -0.408 5.408 23 O -0.506 6.506 24 C -0.246 4.246 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.012 0.988 29 H 0.014 0.986 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.234 0.766 34 H 0.135 0.865 35 H 0.168 0.832 36 H 0.170 0.830 37 H 0.266 0.734 38 H 0.249 0.751 39 H 0.257 0.743 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.410 3.925 26.964 27.251 hybrid contribution -0.176 0.826 -0.661 1.072 sum -0.586 4.751 26.303 26.735 Atomic orbital electron populations 1.21628 0.94844 1.00994 1.00737 1.21210 0.96432 0.99198 0.93559 0.92045 1.18948 0.94595 0.94749 0.91905 1.21610 1.34650 1.08590 0.92019 0.92092 1.25923 0.95256 0.96068 1.02572 1.70092 1.40160 1.22810 1.24350 0.85517 0.78959 0.78389 0.78613 1.19921 1.20904 1.18872 1.21255 0.98512 0.94728 0.83547 1.44809 1.61630 1.28070 1.02392 1.17878 0.92531 0.92929 0.85031 1.20856 1.07363 0.98085 0.99306 1.20980 0.96311 0.99050 0.90610 1.20829 1.06974 0.94608 1.00288 1.17256 0.96103 0.91368 0.84979 1.42354 1.21487 1.51096 1.17011 1.16257 0.81544 0.79329 0.83496 1.42746 1.27012 1.50155 1.20932 1.91011 1.51531 1.69431 1.38614 1.20426 1.09953 1.03283 0.90937 0.93204 0.93914 0.92463 0.98835 0.98648 0.92872 0.92992 0.92988 0.76616 0.86480 0.83163 0.82957 0.73435 0.75104 0.74316 0.86918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.79 8.88 71.98 0.64 -4.15 16 2 C -0.09 -3.50 2.37 -10.79 -0.03 -3.52 16 3 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 4 C 0.04 1.86 4.45 29.85 0.13 2.00 16 5 C -0.53 -29.97 8.41 25.60 0.22 -29.75 16 6 H 0.06 3.31 7.06 -2.91 -0.02 3.29 16 7 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 8 N -0.93 -57.02 13.29 21.45 0.28 -56.74 16 9 Si 0.96 44.67 29.54 68.60 2.03 46.70 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 13 C 0.14 5.18 4.30 86.38 0.37 5.55 16 14 N -0.74 -24.17 5.46 -339.49 -1.85 -26.02 16 15 C 0.22 6.94 6.65 38.20 0.25 7.20 16 16 C -0.23 -6.60 9.31 22.42 0.21 -6.39 16 17 C -0.05 -1.10 10.03 22.23 0.22 -0.88 16 18 C -0.20 -4.00 9.96 22.42 0.22 -3.78 16 19 C 0.20 4.69 6.28 38.13 0.24 4.93 16 20 N -0.67 -10.91 5.35 -317.24 -1.70 -12.61 16 21 C 0.70 13.97 8.57 179.06 1.53 15.51 16 22 N -0.84 -7.39 8.88 -184.75 -1.64 -9.03 16 23 O -0.63 -19.91 14.87 -4.00 -0.06 -19.97 16 24 C -0.22 -6.63 8.50 22.52 0.19 -6.44 16 25 H 0.05 2.03 6.95 -2.38 -0.02 2.01 16 26 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.06 1.89 7.18 -2.39 -0.02 1.88 16 28 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 29 H 0.00 -0.28 8.14 -2.38 -0.02 -0.29 16 30 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 31 H 0.05 1.90 7.94 -2.39 -0.02 1.88 16 32 H 0.05 1.90 7.96 -2.39 -0.02 1.88 16 33 H 0.40 12.57 7.66 -92.71 -0.71 11.86 16 34 H 0.12 3.39 6.72 -2.91 -0.02 3.37 16 35 H 0.15 2.38 8.06 -2.91 -0.02 2.35 16 36 H 0.15 1.85 8.06 -2.91 -0.02 1.82 16 37 H 0.43 3.00 8.83 -92.71 -0.82 2.18 16 38 H 0.42 0.32 8.85 -92.70 -0.82 -0.50 16 39 H 0.42 3.21 8.93 -92.71 -0.83 2.38 16 40 H 0.11 3.76 6.41 -2.92 -0.02 3.74 16 Total: -1.00 -75.68 333.34 -0.35 -76.03 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: -2.08 Total: 20.96 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: 4.67 Total: -19.32 kcal Atomic # 7 Polarization: -99.49 SS G_CDS: -4.91 Total: -104.40 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.06 Total: -19.97 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -75.68 -0.35 -76.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602488930.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.989 kcal (2) G-P(sol) polarization free energy of solvation -75.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds