Wall clock time and date at job start Mon Mar 30 2020 02:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 5 5 C 1.50705 * 109.47390 * 64.99953 * 4 2 1 6 6 H 1.08000 * 119.99498 * 0.02562 * 5 4 2 7 7 C 1.37870 * 120.00441 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99840 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00083 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47080 * 89.99765 * 9 7 5 11 11 H 1.48497 * 109.46846 * 209.99784 * 9 7 5 12 12 H 1.48499 * 109.47093 * 329.99702 * 9 7 5 13 13 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 14 14 N 1.46900 * 109.46619 * 294.99903 * 13 2 1 15 15 C 1.46907 * 110.99641 * 179.97438 * 14 13 2 16 16 H 1.08994 * 110.26805 * 327.06987 * 15 14 13 17 17 C 1.54343 * 110.30076 * 204.99658 * 15 14 13 18 18 C 1.54349 * 102.39091 * 214.71540 * 17 15 14 19 19 C 1.51367 * 105.17060 * 26.35996 * 18 17 15 20 20 C 1.38460 * 130.36958 * 162.83312 * 19 18 17 21 21 C 1.38333 * 120.19772 * 180.10129 * 20 19 18 22 22 F 1.35101 * 120.05770 * 179.89203 * 21 20 19 23 23 C 1.38475 * 119.87759 * 359.87676 * 21 20 19 24 24 C 1.38054 * 119.91104 * 0.04905 * 23 21 20 25 25 C 1.38234 * 109.76011 * 342.80886 * 19 18 17 26 26 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 27 27 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 29 29 H 1.09001 * 109.47630 * 185.00216 * 4 2 1 30 30 H 1.09004 * 109.47346 * 305.00346 * 4 2 1 31 31 H 0.97002 * 119.99729 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.47059 * 54.99596 * 13 2 1 33 33 H 1.08996 * 109.47073 * 174.99688 * 13 2 1 34 34 H 1.00900 * 111.00289 * 56.04740 * 14 13 2 35 35 H 1.09004 * 110.82624 * 332.94109 * 17 15 14 36 36 H 1.09000 * 110.81887 * 96.49213 * 17 15 14 37 37 H 1.09003 * 110.30112 * 145.28741 * 18 17 15 38 38 H 1.08994 * 110.30139 * 267.43302 * 18 17 15 39 39 H 1.07998 * 119.90441 * 359.95788 * 20 19 18 40 40 H 1.08000 * 120.04407 * 180.02562 * 23 21 20 41 41 H 1.07998 * 119.87731 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4766 6 1 1.0806 0.9745 -2.3757 7 6 1.9923 -0.4023 -3.7283 8 7 2.6754 -1.5194 -3.8512 9 14 1.4987 0.5628 -5.2497 10 1 2.5648 1.5416 -5.5825 11 1 1.3109 -0.3711 -6.3889 12 1 0.2280 1.2850 -4.9870 13 6 2.0400 -0.7213 1.2492 14 7 1.6514 0.0374 2.4456 15 6 2.1248 -0.6272 3.6672 16 1 2.1207 -1.7090 3.5343 17 6 1.2405 -0.2319 4.8689 18 6 2.2565 -0.1964 6.0303 19 6 3.5905 0.1027 5.3805 20 6 4.7763 0.5551 5.9341 21 6 5.8841 0.7624 5.1320 22 9 7.0391 1.2059 5.6748 23 6 5.8071 0.5144 3.7718 24 6 4.6251 0.0619 3.2204 25 6 3.5149 -0.1446 4.0226 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 3.1263 -0.7996 -1.2056 30 1 1.6053 -1.7198 -1.2952 31 1 2.9227 -1.8423 -4.7318 32 1 1.6054 -1.7198 1.2951 33 1 3.1263 -0.7995 1.2055 34 1 0.6529 0.1793 2.4753 35 1 0.7937 0.7504 4.7148 36 1 0.4725 -0.9842 5.0487 37 1 1.9952 0.5908 6.7374 38 1 2.2892 -1.1625 6.5338 39 1 4.8359 0.7488 6.9949 40 1 6.6705 0.6750 3.1432 41 1 4.5655 -0.1310 2.1595 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602520706.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:19 Heat of formation + Delta-G solvation = -40.689206 kcal Electronic energy + Delta-G solvation = -20940.153724 eV Core-core repulsion = 17733.143756 eV Total energy + Delta-G solvation = -3207.009969 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.92839 -40.27188 -36.99104 -35.43491 -33.33078 -31.90362 -30.47424 -28.91482 -27.13209 -26.44633 -24.63803 -23.04712 -22.34584 -21.19301 -20.62577 -18.93336 -17.20568 -16.61942 -16.37504 -16.19198 -15.61999 -15.40144 -14.88870 -14.55154 -14.36075 -13.78434 -13.55107 -13.47495 -12.97594 -12.79329 -12.45065 -12.39114 -12.06953 -11.90442 -11.62670 -11.47174 -11.36984 -10.99099 -10.89713 -10.88677 -10.71232 -10.34011 -10.15938 -9.74523 -9.16673 -8.97590 -8.97041 -8.51629 -8.33653 -8.20345 -5.98351 -3.99555 1.11098 1.19423 3.32884 3.39284 3.42224 3.50597 3.99961 4.34517 4.40288 4.44212 4.50245 4.83201 4.85519 5.00519 5.09200 5.20121 5.37620 5.41236 5.49635 5.54290 5.63117 5.74653 5.76628 5.87543 5.93574 6.00695 6.05445 6.08364 6.21851 6.28685 6.43217 6.51513 6.58729 6.85800 6.92074 7.09122 7.14914 7.31908 7.59989 7.68477 7.84171 8.01661 8.45435 9.06760 9.64077 11.13136 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022291 B = 0.003594 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.801072 B = 7789.574141 C = 8722.865831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 H 0.065 0.935 4 C 0.028 3.972 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.061 3.939 14 N -0.680 5.680 15 C 0.121 3.879 16 H 0.062 0.938 17 C -0.123 4.123 18 C -0.077 4.077 19 C -0.074 4.074 20 C -0.147 4.147 21 C 0.092 3.908 22 F -0.143 7.143 23 C -0.154 4.154 24 C -0.061 4.061 25 C -0.081 4.081 26 H 0.063 0.937 27 H 0.041 0.959 28 H 0.032 0.968 29 H 0.015 0.985 30 H 0.014 0.986 31 H 0.259 0.741 32 H 0.025 0.975 33 H 0.067 0.933 34 H 0.342 0.658 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.129 0.871 40 H 0.136 0.864 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.224 1.622 20.640 20.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.084 0.916 4 C -0.009 4.009 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.067 4.067 14 N -0.312 5.312 15 C 0.011 3.989 16 H 0.080 0.920 17 C -0.161 4.161 18 C -0.114 4.114 19 C -0.074 4.074 20 C -0.166 4.166 21 C 0.073 3.927 22 F -0.122 7.122 23 C -0.173 4.173 24 C -0.079 4.079 25 C -0.082 4.082 26 H 0.082 0.918 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.033 0.967 30 H 0.032 0.968 31 H 0.069 0.931 32 H 0.044 0.956 33 H 0.086 0.914 34 H 0.163 0.837 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.147 0.853 40 H 0.154 0.846 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.857 1.941 20.483 20.593 hybrid contribution -0.431 -0.200 -0.868 0.989 sum 0.426 1.742 19.615 19.697 Atomic orbital electron populations 1.21738 0.96648 1.00428 1.00308 1.21227 0.94912 1.00108 0.94081 0.91610 1.19110 0.96097 0.95365 0.90376 1.21232 1.34699 1.08234 0.90978 0.92573 1.25012 0.95332 0.95061 0.99090 1.69964 1.39093 1.21212 1.23388 0.86636 0.78939 0.79825 0.82858 1.20710 1.21329 1.19912 1.22285 1.00391 0.94462 0.89607 1.60660 1.19625 1.50177 1.00774 1.21028 0.90628 0.96509 0.90736 0.92050 1.22543 0.97209 1.02905 0.93440 1.20991 0.90428 1.02215 0.97778 1.20314 0.94591 0.97852 0.94682 1.20421 0.91687 1.04348 1.00124 1.17494 0.82147 1.01085 0.91978 1.91480 1.47188 1.87144 1.86398 1.21086 0.99738 1.03205 0.93244 1.20671 0.90589 0.96132 1.00557 1.20566 0.95325 0.98945 0.93315 0.91846 0.94021 0.94949 0.96710 0.96761 0.93097 0.95650 0.91419 0.83748 0.89736 0.90394 0.90368 0.89939 0.85290 0.84630 0.84612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 8.77 37.16 0.33 -2.08 16 2 C -0.08 -1.67 2.55 -90.62 -0.23 -1.90 16 3 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.20 8.41 -34.44 -0.29 -14.49 16 6 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.78 13.29 55.43 0.74 -26.05 16 9 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 13 C 0.06 1.00 4.92 -3.82 -0.02 0.98 16 14 N -0.68 -9.37 6.28 -106.84 -0.67 -10.04 16 15 C 0.12 1.43 3.20 -67.82 -0.22 1.22 16 16 H 0.06 0.74 7.82 -51.93 -0.41 0.33 16 17 C -0.12 -1.10 6.47 -25.32 -0.16 -1.27 16 18 C -0.08 -0.65 6.77 -26.85 -0.18 -0.83 16 19 C -0.07 -0.83 6.14 -104.21 -0.64 -1.47 16 20 C -0.15 -1.66 10.02 -39.46 -0.40 -2.05 16 21 C 0.09 1.15 7.30 -39.46 -0.29 0.86 16 22 F -0.14 -1.83 17.27 2.25 0.04 -1.79 16 23 C -0.15 -1.94 10.03 -39.56 -0.40 -2.34 16 24 C -0.06 -0.82 9.74 -39.55 -0.39 -1.21 16 25 C -0.08 -1.03 5.78 -104.19 -0.60 -1.63 16 26 H 0.06 1.25 6.95 -51.93 -0.36 0.89 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.03 0.48 6.68 -51.93 -0.35 0.13 16 29 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.03 0.42 8.07 -51.93 -0.42 0.00 16 33 H 0.07 1.15 5.97 -51.93 -0.31 0.84 16 34 H 0.34 4.35 6.63 -39.29 -0.26 4.09 16 35 H 0.08 0.77 8.05 -51.93 -0.42 0.35 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 41 H 0.14 1.90 6.11 -52.49 -0.32 1.58 16 LS Contribution 332.46 15.07 5.01 5.01 Total: -1.00 -29.83 332.46 -9.76 -39.59 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -6.15 Total: 0.85 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: -3.70 Total: -24.14 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: 0.07 Total: -36.09 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.83 -9.76 -39.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602520706.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.100 kcal (2) G-P(sol) polarization free energy of solvation -29.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds