Wall clock time and date at job start Mon Mar 30 2020 02:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 5 5 C 1.50703 * 109.46970 * 294.99898 * 4 2 1 6 6 H 1.08002 * 119.99817 * 359.97438 * 5 4 2 7 7 C 1.37870 * 120.00164 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00042 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00234 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47025 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47498 * 119.99753 * 9 7 5 12 12 H 1.48500 * 109.47291 * 240.00350 * 9 7 5 13 13 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 14 14 N 1.46905 * 109.47150 * 64.99960 * 13 2 1 15 15 C 1.46900 * 111.00154 * 180.02562 * 14 13 2 16 16 H 1.09001 * 110.26866 * 324.38131 * 15 14 13 17 17 C 1.54337 * 110.30400 * 202.20497 * 15 14 13 18 18 C 1.54350 * 102.39354 * 267.43072 * 17 15 14 19 19 C 1.51384 * 105.16898 * 333.64115 * 18 17 15 20 20 C 1.38511 * 130.35574 * 197.19630 * 19 18 17 21 21 C 1.38057 * 120.25039 * 180.02562 * 20 19 18 22 22 C 1.38486 * 119.90685 * 359.97438 * 21 20 19 23 23 F 1.35103 * 120.05752 * 180.02562 * 22 21 20 24 24 C 1.38325 * 119.87950 * 359.97438 * 22 21 20 25 25 C 1.38229 * 109.74877 * 17.19937 * 19 18 17 26 26 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 27 27 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 28 28 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47059 * 54.99596 * 4 2 1 30 30 H 1.08996 * 109.47073 * 174.99688 * 4 2 1 31 31 H 0.97001 * 120.00168 * 180.02562 * 8 7 5 32 32 H 1.09001 * 109.47630 * 185.00216 * 13 2 1 33 33 H 1.09004 * 109.47346 * 305.00346 * 13 2 1 34 34 H 1.00901 * 110.99731 * 56.05181 * 14 13 2 35 35 H 1.08999 * 110.82686 * 25.65520 * 17 15 14 36 36 H 1.09002 * 110.82386 * 149.20819 * 17 15 14 37 37 H 1.08999 * 110.30619 * 214.71862 * 18 17 15 38 38 H 1.08999 * 110.30119 * 92.56103 * 18 17 15 39 39 H 1.08004 * 119.87652 * 359.97438 * 20 19 18 40 40 H 1.08002 * 120.04924 * 180.02562 * 21 20 19 41 41 H 1.07996 * 119.90132 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0570 2.4766 6 1 1.0807 0.9746 2.3756 7 6 1.9924 -0.4022 3.7283 8 7 2.6747 -1.5198 3.8512 9 14 1.4988 0.5629 5.2496 10 1 0.7434 1.7751 4.8433 11 1 0.6440 -0.2855 6.1184 12 1 2.7171 0.9667 5.9965 13 6 2.0400 -0.7213 -1.2492 14 7 1.6513 0.0374 -2.4457 15 6 2.1247 -0.6272 -3.6672 16 1 3.0937 -1.0945 -3.4917 17 6 2.2192 0.3873 -4.8265 18 6 0.8378 0.2491 -5.5011 19 6 0.3791 -1.1574 -5.1802 20 6 -0.6074 -1.9344 -5.7647 21 6 -0.8555 -3.2099 -5.2984 22 6 -0.1153 -3.7154 -4.2428 23 9 -0.3553 -4.9634 -3.7844 24 6 0.8707 -2.9405 -3.6592 25 6 1.1186 -1.6608 -4.1263 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6054 -1.7198 1.2951 30 1 3.1263 -0.7995 1.2055 31 1 2.9213 -1.8431 4.7319 32 1 3.1263 -0.7996 -1.2056 33 1 1.6053 -1.7198 -1.2952 34 1 1.9882 0.9872 -2.3967 35 1 2.3652 1.3982 -4.4459 36 1 3.0167 0.1132 -5.5172 37 1 0.9285 0.3806 -6.5793 38 1 0.1406 0.9779 -5.0877 39 1 -1.1853 -1.5406 -6.5878 40 1 -1.6253 -3.8131 -5.7569 41 1 1.4485 -3.3345 -2.8362 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602539707.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:37 Heat of formation + Delta-G solvation = -40.545375 kcal Electronic energy + Delta-G solvation = -21150.496168 eV Core-core repulsion = 17943.492436 eV Total energy + Delta-G solvation = -3207.003732 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.86043 -40.28013 -36.95988 -35.37140 -33.12847 -31.80616 -30.83117 -28.74250 -27.06724 -26.35766 -24.61767 -23.07860 -22.41060 -21.14477 -20.65325 -18.97380 -17.07967 -16.64334 -16.31515 -15.91571 -15.56737 -15.36088 -14.94369 -14.54578 -14.37774 -13.85674 -13.66672 -13.60153 -13.00838 -12.56860 -12.41740 -12.19825 -11.97735 -11.71554 -11.60775 -11.42179 -11.18898 -11.13513 -10.88695 -10.84513 -10.72162 -10.27625 -10.18249 -9.70111 -9.18360 -9.01439 -8.92714 -8.48780 -8.32244 -8.17065 -5.96711 -3.97811 1.10953 1.17420 3.32741 3.40347 3.44279 3.47767 4.04041 4.30071 4.42865 4.45915 4.54559 4.81618 4.89176 4.94871 5.08369 5.24577 5.39232 5.44635 5.56729 5.58400 5.64955 5.73400 5.81946 5.90130 5.92096 6.04168 6.08562 6.15474 6.18541 6.42582 6.51438 6.56121 6.69429 6.84838 7.01413 7.18566 7.20121 7.32504 7.60635 7.70507 7.86132 8.03482 8.47430 9.08768 9.65687 11.14887 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021897 B = 0.003835 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.411165 B = 7299.270967 C = 8038.961014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.081 4.081 3 H 0.054 0.946 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.057 0.943 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.062 3.938 14 N -0.674 5.674 15 C 0.120 3.880 16 H 0.054 0.946 17 C -0.121 4.121 18 C -0.073 4.073 19 C -0.097 4.097 20 C -0.085 4.085 21 C -0.154 4.154 22 C 0.094 3.906 23 F -0.141 7.141 24 C -0.131 4.131 25 C -0.044 4.044 26 H 0.053 0.947 27 H 0.041 0.959 28 H 0.038 0.962 29 H 0.016 0.984 30 H 0.012 0.988 31 H 0.259 0.741 32 H 0.026 0.974 33 H 0.066 0.934 34 H 0.342 0.658 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.128 0.872 40 H 0.133 0.867 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.171 1.077 -21.877 22.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.100 4.100 3 H 0.072 0.928 4 C -0.011 4.011 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.066 4.066 14 N -0.307 5.307 15 C 0.011 3.989 16 H 0.072 0.928 17 C -0.158 4.158 18 C -0.110 4.110 19 C -0.098 4.098 20 C -0.103 4.103 21 C -0.173 4.173 22 C 0.075 3.925 23 F -0.119 7.119 24 C -0.150 4.150 25 C -0.045 4.045 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.034 0.966 30 H 0.031 0.969 31 H 0.068 0.932 32 H 0.044 0.956 33 H 0.084 0.916 34 H 0.162 0.838 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.146 0.854 40 H 0.151 0.849 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.718 0.651 -21.751 22.076 hybrid contribution 0.615 0.181 1.222 1.380 sum -3.103 0.832 -20.529 20.779 Atomic orbital electron populations 1.21576 0.95706 1.00549 1.00082 1.21190 0.96002 0.98855 0.93944 0.92803 1.19126 0.95873 0.95605 0.90464 1.21269 1.34502 1.08253 0.90967 0.92516 1.25020 0.95346 0.95093 0.99103 1.69977 1.39220 1.21220 1.23253 0.86580 0.78235 0.80146 0.83311 1.19744 1.21079 1.21124 1.22246 0.97096 0.97916 0.89342 1.60458 1.64157 1.05445 1.00591 1.20942 0.94243 0.92567 0.91184 0.92769 1.22480 0.97230 0.99387 0.96737 1.20962 0.96633 0.92922 1.00459 1.20615 0.96130 0.96353 0.96709 1.20387 0.97184 0.92882 0.99853 1.20967 1.01485 0.97137 0.97744 1.17499 0.97968 0.80701 0.96315 1.91500 1.93688 1.38520 1.88236 1.20643 0.98784 0.94316 1.01281 1.20257 0.97077 0.92599 0.94604 0.92797 0.93988 0.94264 0.96585 0.96948 0.93163 0.95591 0.91578 0.83827 0.89936 0.90523 0.90929 0.89611 0.85449 0.84862 0.85013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 8.89 37.16 0.33 -2.08 16 2 C -0.08 -1.65 2.48 -90.62 -0.22 -1.87 16 3 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 4 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.40 8.41 -34.44 -0.29 -14.69 16 6 H 0.06 1.56 7.06 -52.49 -0.37 1.19 16 7 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.17 13.29 55.43 0.74 -26.44 16 9 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 C 0.06 1.06 4.90 -3.82 -0.02 1.05 16 14 N -0.67 -9.33 5.78 -106.85 -0.62 -9.94 16 15 C 0.12 1.43 3.19 -67.83 -0.22 1.22 16 16 H 0.05 0.66 7.86 -51.93 -0.41 0.25 16 17 C -0.12 -1.06 6.74 -25.32 -0.17 -1.23 16 18 C -0.07 -0.64 6.77 -26.84 -0.18 -0.82 16 19 C -0.10 -1.09 6.14 -104.19 -0.64 -1.73 16 20 C -0.08 -0.87 10.04 -39.55 -0.40 -1.26 16 21 C -0.15 -1.71 10.03 -39.56 -0.40 -2.11 16 22 C 0.09 1.26 7.30 -39.46 -0.29 0.97 16 23 F -0.14 -2.00 17.27 2.25 0.04 -1.96 16 24 C -0.13 -1.81 9.55 -39.47 -0.38 -2.19 16 25 C -0.04 -0.57 5.65 -104.21 -0.59 -1.16 16 26 H 0.05 1.14 6.95 -51.93 -0.36 0.77 16 27 H 0.04 0.75 7.75 -51.93 -0.40 0.34 16 28 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.03 0.45 8.08 -51.93 -0.42 0.03 16 33 H 0.07 1.19 7.09 -51.93 -0.37 0.82 16 34 H 0.34 4.28 8.10 -39.29 -0.32 3.97 16 35 H 0.08 0.65 7.58 -51.93 -0.39 0.25 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 40 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 41 H 0.13 1.84 7.56 -52.49 -0.40 1.45 16 LS Contribution 336.62 15.07 5.07 5.07 Total: -1.00 -30.71 336.62 -9.85 -40.56 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -6.38 Total: -0.23 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: -3.68 Total: -23.87 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: 0.12 Total: -36.38 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.71 -9.85 -40.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602539707.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.014 kcal (2) G-P(sol) polarization free energy of solvation -30.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds