Wall clock time and date at job start Mon Mar 30 2020 02:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47348 * 2 1 4 4 C 1.52999 * 109.47115 * 239.99997 * 2 1 3 5 5 C 1.50693 * 109.47181 * 64.99938 * 4 2 1 6 6 H 1.07995 * 120.00415 * 359.97438 * 5 4 2 7 7 C 1.37882 * 119.99937 * 180.27949 * 5 4 2 8 8 N 1.31515 * 119.99911 * 359.72088 * 7 5 4 9 9 Si 1.86795 * 120.00030 * 179.72593 * 7 5 4 10 10 H 1.48502 * 109.47199 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47303 * 119.99582 * 9 7 5 12 12 H 1.48507 * 109.47110 * 239.99737 * 9 7 5 13 13 C 1.53004 * 109.47006 * 119.99821 * 2 1 3 14 14 N 1.46900 * 109.47253 * 294.99518 * 13 2 1 15 15 C 1.46896 * 110.99868 * 182.72405 * 14 13 2 16 16 C 1.50704 * 115.54596 * 185.40996 * 15 14 13 17 17 C 1.38244 * 119.97061 * 184.55162 * 16 15 14 18 18 C 1.38200 * 120.02445 * 179.76790 * 17 16 15 19 19 C 1.38462 * 119.97219 * 0.51230 * 18 17 16 20 20 F 1.35102 * 120.02406 * 179.76928 * 19 18 17 21 21 C 1.38453 * 119.94947 * 359.74331 * 19 18 17 22 22 C 1.38201 * 119.97504 * 359.97438 * 21 19 18 23 23 C 1.52991 * 117.50054 * 39.74419 * 15 14 13 24 24 C 1.52991 * 117.50148 * 331.08055 * 15 14 13 25 25 H 1.08995 * 109.47299 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47002 * 300.00278 * 1 2 3 27 27 H 1.08998 * 109.46948 * 59.99717 * 1 2 3 28 28 H 1.08999 * 109.46645 * 304.99846 * 4 2 1 29 29 H 1.09002 * 109.47339 * 185.00259 * 4 2 1 30 30 H 0.96996 * 120.00342 * 180.02562 * 8 7 5 31 31 H 1.08999 * 109.46980 * 55.00192 * 13 2 1 32 32 H 1.09003 * 109.47046 * 174.99909 * 13 2 1 33 33 H 1.00897 * 111.00213 * 306.68804 * 14 13 2 34 34 H 1.07996 * 119.99354 * 0.02562 * 17 16 15 35 35 H 1.07998 * 120.01377 * 180.25576 * 18 17 16 36 36 H 1.08005 * 120.01485 * 179.97438 * 21 19 18 37 37 H 1.07997 * 119.98795 * 180.02562 * 22 21 19 38 38 H 1.09005 * 117.49743 * 359.97438 * 23 15 14 39 39 H 1.09000 * 117.50376 * 145.01871 * 23 15 14 40 40 H 1.09008 * 117.50233 * 214.97902 * 24 15 14 41 41 H 1.08998 * 117.49980 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0570 -2.4765 6 1 1.0800 0.9741 -2.3757 7 6 1.9878 -0.4051 -3.7286 8 7 2.6710 -1.5221 -3.8514 9 14 1.4871 0.5556 -5.2503 10 1 0.7308 1.7674 -4.8440 11 1 2.7019 0.9590 -6.0031 12 1 0.6298 -0.2961 -6.1135 13 6 2.0400 -0.7212 1.2493 14 7 1.6515 0.0375 2.4457 15 6 2.1803 -0.5920 3.6630 16 6 1.7371 0.0307 4.9618 17 6 2.2531 -0.4283 6.1594 18 6 1.8510 0.1451 7.3507 19 6 0.9230 1.1727 7.3453 20 9 0.5256 1.7309 8.5097 21 6 0.4029 1.6280 6.1457 22 6 0.8108 1.0570 4.9552 23 6 3.5966 -1.1674 3.6026 24 6 2.3891 -2.1074 3.6411 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.6054 -1.7198 -1.2951 29 1 3.1263 -0.7995 -1.2056 30 1 2.9151 -1.8470 -4.7321 31 1 1.6054 -1.7198 1.2952 32 1 3.1263 -0.7995 1.2056 33 1 1.9497 0.9990 2.3768 34 1 2.9739 -1.2326 6.1637 35 1 2.2574 -0.2108 8.2859 36 1 -0.3214 2.4292 6.1403 37 1 0.4056 1.4123 4.0193 38 1 4.1358 -1.0793 2.6594 39 1 4.2077 -1.0961 4.5024 40 1 2.2063 -2.6541 4.5663 41 1 2.1345 -2.6374 2.7233 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602543842.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:34 Heat of formation + Delta-G solvation = -7.396914 kcal Electronic energy + Delta-G solvation = -20765.750251 eV Core-core repulsion = 17560.183945 eV Total energy + Delta-G solvation = -3205.566306 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.05345 -40.11628 -37.89586 -35.47361 -32.72153 -31.56224 -30.65364 -30.33027 -26.84555 -25.60064 -23.50895 -23.06114 -22.62889 -22.16136 -19.62975 -19.33320 -17.92540 -16.69035 -16.44226 -16.07636 -15.75340 -15.17823 -14.85910 -14.74404 -14.42733 -13.93964 -13.61330 -13.31159 -13.15377 -12.84835 -12.72195 -12.30617 -12.04801 -11.82220 -11.45300 -11.33377 -11.15597 -11.07353 -10.86484 -10.67213 -10.49149 -10.30764 -10.23702 -9.73653 -9.28807 -9.20360 -8.98394 -8.69170 -8.35563 -8.02377 -6.00153 -4.01300 0.91906 1.05653 3.26852 3.30560 3.38388 3.42218 3.94270 4.06925 4.08974 4.42853 4.47089 4.56553 4.68797 4.75646 4.95580 5.10532 5.28700 5.35779 5.41523 5.50403 5.64301 5.72079 5.77897 5.82686 5.89006 5.96124 6.08102 6.10628 6.17043 6.29332 6.41102 6.49627 6.62446 6.70433 6.96151 7.12432 7.15162 7.26802 7.51590 7.66117 7.81125 7.99752 8.43504 9.05245 9.62391 11.11420 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035739 B = 0.003067 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.272678 B = 9126.270149 C = 9710.020624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.083 4.083 3 H 0.054 0.946 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.057 0.943 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.058 3.942 14 N -0.645 5.645 15 C 0.089 3.911 16 C -0.041 4.041 17 C -0.092 4.092 18 C -0.153 4.153 19 C 0.087 3.913 20 F -0.144 7.144 21 C -0.153 4.153 22 C -0.071 4.071 23 C -0.214 4.214 24 C -0.163 4.163 25 H 0.040 0.960 26 H 0.041 0.959 27 H 0.054 0.946 28 H 0.016 0.984 29 H 0.012 0.988 30 H 0.259 0.741 31 H 0.072 0.928 32 H 0.032 0.968 33 H 0.343 0.657 34 H 0.131 0.869 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.145 0.855 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.834 2.434 21.209 21.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.102 4.102 3 H 0.072 0.928 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.070 4.070 14 N -0.275 5.275 15 C -0.004 4.004 16 C -0.042 4.042 17 C -0.110 4.110 18 C -0.172 4.172 19 C 0.068 3.932 20 F -0.123 7.123 21 C -0.171 4.171 22 C -0.089 4.089 23 C -0.253 4.253 24 C -0.200 4.200 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.035 0.965 29 H 0.031 0.969 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.051 0.949 33 H 0.163 0.837 34 H 0.149 0.851 35 H 0.151 0.849 36 H 0.153 0.847 37 H 0.163 0.837 38 H 0.122 0.878 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.417 2.059 21.149 21.296 hybrid contribution 0.701 0.664 -0.800 1.254 sum -0.716 2.723 20.349 20.543 Atomic orbital electron populations 1.21602 0.95626 1.00680 1.00189 1.21222 0.96069 0.98938 0.93938 0.92763 1.19113 0.95896 0.95583 0.90372 1.21262 1.34628 1.08247 0.90930 0.92498 1.25023 0.95333 0.95079 0.99132 1.69971 1.39181 1.21202 1.23299 0.86576 0.78273 0.80121 0.83279 1.19732 1.21110 1.21076 1.22349 0.97782 0.98086 0.88813 1.60295 1.61187 1.05881 1.00104 1.20110 0.95741 0.94799 0.89744 1.18991 0.96871 0.96144 0.92198 1.20806 0.99630 0.99715 0.90893 1.21034 0.99176 0.97441 0.99520 1.17748 0.98209 0.95777 0.81453 1.91486 1.89695 1.84306 1.46787 1.21194 1.02377 1.02331 0.91227 1.20984 0.95272 0.94515 0.98108 1.23726 0.92008 1.05715 1.03884 1.23340 1.01323 0.91290 1.04078 0.94084 0.93977 0.92682 0.96537 0.96935 0.93132 0.90955 0.94950 0.83745 0.85116 0.84892 0.84723 0.83745 0.87817 0.88689 0.88460 0.87473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.31 8.89 37.16 0.33 -1.98 16 2 C -0.08 -1.61 2.45 -90.62 -0.22 -1.83 16 3 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 4 C 0.03 0.70 4.45 -27.89 -0.12 0.57 16 5 C -0.51 -14.11 8.41 -34.44 -0.29 -14.40 16 6 H 0.06 1.53 7.05 -52.49 -0.37 1.16 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.70 13.29 55.43 0.74 -25.97 16 9 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 C 0.06 0.93 4.13 -3.82 -0.02 0.91 16 14 N -0.65 -8.68 5.11 -101.15 -0.52 -9.20 16 15 C 0.09 1.05 3.16 -132.76 -0.42 0.63 16 16 C -0.04 -0.45 5.67 -104.62 -0.59 -1.05 16 17 C -0.09 -0.88 8.74 -39.59 -0.35 -1.23 16 18 C -0.15 -1.45 10.03 -39.51 -0.40 -1.84 16 19 C 0.09 0.92 7.30 -39.42 -0.29 0.63 16 20 F -0.14 -1.60 17.27 2.25 0.04 -1.56 16 21 C -0.15 -1.55 10.03 -39.52 -0.40 -1.94 16 22 C -0.07 -0.76 9.45 -39.59 -0.37 -1.13 16 23 C -0.21 -2.37 9.19 -26.70 -0.25 -2.61 16 24 C -0.16 -1.85 9.13 -26.70 -0.24 -2.09 16 25 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.04 0.69 7.75 -51.92 -0.40 0.29 16 27 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 31 H 0.07 1.20 6.40 -51.93 -0.33 0.87 16 32 H 0.03 0.53 6.14 -51.93 -0.32 0.21 16 33 H 0.34 4.39 8.56 -39.29 -0.34 4.06 16 34 H 0.13 1.03 6.50 -52.49 -0.34 0.69 16 35 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.13 1.14 8.06 -52.48 -0.42 0.71 16 37 H 0.14 1.52 7.16 -52.49 -0.38 1.15 16 38 H 0.10 1.27 6.36 -51.93 -0.33 0.94 16 39 H 0.09 0.90 7.05 -51.93 -0.37 0.53 16 40 H 0.10 0.94 7.59 -51.92 -0.39 0.55 16 41 H 0.11 1.34 6.12 -51.93 -0.32 1.02 16 LS Contribution 333.64 15.07 5.03 5.03 Total: -1.00 -29.29 333.64 -9.37 -38.67 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -5.92 Total: 2.45 kcal Atomic # 6 Polarization: -22.18 SS G_CDS: -3.72 Total: -25.90 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.22 Total: -35.16 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.29 -9.37 -38.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602543842.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.272 kcal (2) G-P(sol) polarization free energy of solvation -29.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds