Wall clock time and date at job start Mon Mar 30 2020 02:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47348 * 2 1 4 4 C 1.52999 * 109.47115 * 239.99997 * 2 1 3 5 5 C 1.50693 * 109.47181 * 64.99938 * 4 2 1 6 6 H 1.07995 * 120.00415 * 359.97438 * 5 4 2 7 7 C 1.37882 * 119.99937 * 180.27949 * 5 4 2 8 8 N 1.31515 * 119.99911 * 359.72088 * 7 5 4 9 9 Si 1.86795 * 120.00030 * 179.72593 * 7 5 4 10 10 H 1.48502 * 109.47199 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47303 * 119.99582 * 9 7 5 12 12 H 1.48507 * 109.47110 * 239.99737 * 9 7 5 13 13 C 1.53004 * 109.47006 * 119.99821 * 2 1 3 14 14 N 1.46900 * 109.47253 * 294.99518 * 13 2 1 15 15 C 1.46896 * 110.99868 * 182.72405 * 14 13 2 16 16 C 1.50704 * 115.54596 * 185.40996 * 15 14 13 17 17 C 1.38244 * 119.97061 * 184.55162 * 16 15 14 18 18 C 1.38200 * 120.02445 * 179.76790 * 17 16 15 19 19 C 1.38462 * 119.97219 * 0.51230 * 18 17 16 20 20 F 1.35102 * 120.02406 * 179.76928 * 19 18 17 21 21 C 1.38453 * 119.94947 * 359.74331 * 19 18 17 22 22 C 1.38201 * 119.97504 * 359.97438 * 21 19 18 23 23 C 1.52991 * 117.50054 * 39.74419 * 15 14 13 24 24 C 1.52991 * 117.50148 * 331.08055 * 15 14 13 25 25 H 1.08995 * 109.47299 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47002 * 300.00278 * 1 2 3 27 27 H 1.08998 * 109.46948 * 59.99717 * 1 2 3 28 28 H 1.08999 * 109.46645 * 304.99846 * 4 2 1 29 29 H 1.09002 * 109.47339 * 185.00259 * 4 2 1 30 30 H 0.96996 * 120.00342 * 180.02562 * 8 7 5 31 31 H 1.08999 * 109.46980 * 55.00192 * 13 2 1 32 32 H 1.09003 * 109.47046 * 174.99909 * 13 2 1 33 33 H 1.00897 * 111.00213 * 306.68804 * 14 13 2 34 34 H 1.07996 * 119.99354 * 0.02562 * 17 16 15 35 35 H 1.07998 * 120.01377 * 180.25576 * 18 17 16 36 36 H 1.08005 * 120.01485 * 179.97438 * 21 19 18 37 37 H 1.07997 * 119.98795 * 180.02562 * 22 21 19 38 38 H 1.09005 * 117.49743 * 359.97438 * 23 15 14 39 39 H 1.09000 * 117.50376 * 145.01871 * 23 15 14 40 40 H 1.09008 * 117.50233 * 214.97902 * 24 15 14 41 41 H 1.08998 * 117.49980 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0570 -2.4765 6 1 1.0800 0.9741 -2.3757 7 6 1.9878 -0.4051 -3.7286 8 7 2.6710 -1.5221 -3.8514 9 14 1.4871 0.5556 -5.2503 10 1 0.7308 1.7674 -4.8440 11 1 2.7019 0.9590 -6.0031 12 1 0.6298 -0.2961 -6.1135 13 6 2.0400 -0.7212 1.2493 14 7 1.6515 0.0375 2.4457 15 6 2.1803 -0.5920 3.6630 16 6 1.7371 0.0307 4.9618 17 6 2.2531 -0.4283 6.1594 18 6 1.8510 0.1451 7.3507 19 6 0.9230 1.1727 7.3453 20 9 0.5256 1.7309 8.5097 21 6 0.4029 1.6280 6.1457 22 6 0.8108 1.0570 4.9552 23 6 3.5966 -1.1674 3.6026 24 6 2.3891 -2.1074 3.6411 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.6054 -1.7198 -1.2951 29 1 3.1263 -0.7995 -1.2056 30 1 2.9151 -1.8470 -4.7321 31 1 1.6054 -1.7198 1.2952 32 1 3.1263 -0.7995 1.2056 33 1 1.9497 0.9990 2.3768 34 1 2.9739 -1.2326 6.1637 35 1 2.2574 -0.2108 8.2859 36 1 -0.3214 2.4292 6.1403 37 1 0.4056 1.4123 4.0193 38 1 4.1358 -1.0793 2.6594 39 1 4.2077 -1.0961 4.5024 40 1 2.2063 -2.6541 4.5663 41 1 2.1345 -2.6374 2.7233 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602543842.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:34 Heat of formation + Delta-G solvation = -22.198000 kcal Electronic energy + Delta-G solvation = -20766.392075 eV Core-core repulsion = 17560.183945 eV Total energy + Delta-G solvation = -3206.208130 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.86280 -40.99974 -38.87821 -36.99400 -34.59902 -32.69073 -31.75555 -31.13117 -28.77590 -26.98302 -25.00073 -23.83050 -23.65406 -23.32133 -20.90708 -20.56615 -18.75637 -18.45466 -17.61507 -17.06506 -16.57433 -16.55685 -16.10909 -16.01934 -15.61388 -15.22490 -14.55635 -14.44889 -14.21544 -14.06545 -13.91608 -13.66560 -13.47640 -13.19430 -12.87658 -12.79436 -12.60824 -12.35392 -12.15896 -12.11990 -11.90437 -11.78717 -11.41020 -11.36951 -11.07132 -10.92352 -10.53657 -10.02722 -9.59008 -9.04627 -8.17506 -6.26164 0.12972 0.31675 1.39894 1.40869 1.53411 2.42042 2.46993 2.96487 3.14750 3.16394 3.31652 3.55685 3.73237 3.91183 4.00540 4.04758 4.13610 4.31827 4.38762 4.45937 4.53330 4.63791 4.71699 4.82583 4.92897 4.99225 5.01799 5.06530 5.10418 5.19281 5.20644 5.29914 5.34929 5.46918 5.52069 5.52436 5.58553 5.81992 5.89487 5.93962 6.06231 6.31471 6.42487 6.90311 7.42235 8.94752 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035739 B = 0.003067 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.272678 B = 9126.270149 C = 9710.020624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.074 4.074 3 H 0.055 0.945 4 C 0.033 3.967 5 C -0.527 4.527 6 H 0.061 0.939 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.959 3.041 10 H -0.261 1.261 11 H -0.280 1.280 12 H -0.281 1.281 13 C 0.074 3.926 14 N -0.643 5.643 15 C 0.083 3.917 16 C -0.050 4.050 17 C -0.089 4.089 18 C -0.150 4.150 19 C 0.073 3.927 20 F -0.150 7.150 21 C -0.155 4.155 22 C -0.080 4.080 23 C -0.207 4.207 24 C -0.165 4.165 25 H 0.034 0.966 26 H 0.068 0.932 27 H 0.037 0.963 28 H -0.011 1.011 29 H -0.014 1.014 30 H 0.261 0.739 31 H 0.066 0.934 32 H 0.027 0.973 33 H 0.348 0.652 34 H 0.151 0.849 35 H 0.154 0.846 36 H 0.147 0.853 37 H 0.143 0.857 38 H 0.088 0.912 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.134 3.229 22.510 22.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.093 4.093 3 H 0.074 0.926 4 C -0.004 4.004 5 C -0.565 4.565 6 H 0.079 0.921 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.784 3.216 10 H -0.185 1.185 11 H -0.206 1.206 12 H -0.207 1.207 13 C -0.054 4.054 14 N -0.272 5.272 15 C -0.010 4.010 16 C -0.051 4.051 17 C -0.108 4.108 18 C -0.168 4.168 19 C 0.054 3.946 20 F -0.129 7.129 21 C -0.174 4.174 22 C -0.098 4.098 23 C -0.247 4.247 24 C -0.202 4.202 25 H 0.053 0.947 26 H 0.087 0.913 27 H 0.056 0.944 28 H 0.008 0.992 29 H 0.005 0.995 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.045 0.955 33 H 0.168 0.832 34 H 0.168 0.832 35 H 0.172 0.828 36 H 0.165 0.835 37 H 0.161 0.839 38 H 0.106 0.894 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.722 2.867 22.468 22.715 hybrid contribution 0.810 0.399 -1.155 1.466 sum -0.912 3.267 21.313 21.581 Atomic orbital electron populations 1.21503 0.94680 1.00378 1.00599 1.21019 0.96699 0.98485 0.93078 0.92624 1.18998 0.94104 0.94657 0.92674 1.21671 1.34284 1.08490 0.92040 0.92067 1.25936 0.95339 0.96068 1.02629 1.70101 1.40462 1.22907 1.24183 0.85479 0.78053 0.78932 0.79093 1.18529 1.20596 1.20653 1.21989 0.97187 0.97578 0.88673 1.60179 1.61409 1.05942 0.99690 1.20156 0.96398 0.95090 0.89314 1.19007 0.97444 0.96539 0.92107 1.20986 0.99612 0.99933 0.90238 1.21283 0.98435 0.96696 1.00421 1.17975 0.98871 0.96405 0.81370 1.91472 1.89841 1.84487 1.47063 1.21333 1.02503 1.02561 0.90968 1.21018 0.95633 0.94859 0.98301 1.23728 0.91779 1.05052 1.04094 1.23394 1.01372 0.91097 1.04335 0.94729 0.91272 0.94403 0.99218 0.99523 0.92977 0.91552 0.95486 0.83200 0.83178 0.82814 0.83512 0.83887 0.89379 0.86525 0.86422 0.89095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.22 8.89 71.98 0.64 -3.58 16 2 C -0.07 -2.90 2.45 -10.79 -0.03 -2.92 16 3 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 4 C 0.03 1.71 4.45 29.85 0.13 1.85 16 5 C -0.53 -29.43 8.41 25.60 0.22 -29.21 16 6 H 0.06 3.30 7.05 -2.91 -0.02 3.28 16 7 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 8 N -0.94 -56.88 13.29 21.45 0.28 -56.60 16 9 Si 0.96 44.25 29.54 68.60 2.03 46.27 16 10 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 12 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 13 C 0.07 2.40 4.13 86.30 0.36 2.75 16 14 N -0.64 -16.59 5.11 -473.92 -2.42 -19.02 16 15 C 0.08 1.83 3.16 2.78 0.01 1.84 16 16 C -0.05 -1.00 5.67 -19.86 -0.11 -1.11 16 17 C -0.09 -1.46 8.74 22.26 0.19 -1.27 16 18 C -0.15 -2.44 10.03 22.31 0.22 -2.21 16 19 C 0.07 1.40 7.30 22.37 0.16 1.56 16 20 F -0.15 -3.10 17.27 44.97 0.78 -2.33 16 21 C -0.16 -2.89 10.03 22.31 0.22 -2.67 16 22 C -0.08 -1.59 9.45 22.26 0.21 -1.38 16 23 C -0.21 -4.25 9.19 30.61 0.28 -3.97 16 24 C -0.16 -3.48 9.13 30.61 0.28 -3.20 16 25 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.07 2.16 7.75 -2.38 -0.02 2.15 16 27 H 0.04 1.50 6.95 -2.39 -0.02 1.48 16 28 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 29 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 30 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 31 H 0.07 2.23 6.40 -2.39 -0.02 2.22 16 32 H 0.03 0.90 6.14 -2.39 -0.01 0.89 16 33 H 0.35 8.47 8.56 -89.70 -0.77 7.70 16 34 H 0.15 1.83 6.50 -2.91 -0.02 1.81 16 35 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 36 H 0.15 2.26 8.06 -2.91 -0.02 2.23 16 37 H 0.14 2.81 7.16 -2.91 -0.02 2.79 16 38 H 0.09 2.11 6.36 -2.38 -0.02 2.10 16 39 H 0.12 1.88 7.05 -2.39 -0.02 1.86 16 40 H 0.12 1.99 7.59 -2.38 -0.02 1.97 16 41 H 0.09 2.24 6.12 -2.39 -0.01 2.23 16 Total: -1.00 -63.07 333.64 4.18 -58.88 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.27 Total: 15.99 kcal Atomic # 6 Polarization: -46.46 SS G_CDS: 3.25 Total: -43.20 kcal Atomic # 7 Polarization: -73.47 SS G_CDS: -2.14 Total: -75.61 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.78 Total: -2.33 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Total: -63.07 4.18 -58.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602543842.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.686 kcal (2) G-P(sol) polarization free energy of solvation -63.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds