Wall clock time and date at job start Mon Mar 30 2020 02:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46874 * 2 1 4 4 C 1.53006 * 109.46941 * 119.99477 * 2 1 3 5 5 C 1.50699 * 109.47037 * 295.00036 * 4 2 1 6 6 H 1.07998 * 120.00257 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99438 * 180.02562 * 5 4 2 8 8 N 1.31519 * 120.00532 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99694 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.47063 * 59.99959 * 9 7 5 11 11 H 1.48504 * 109.47140 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47576 * 300.00001 * 9 7 5 13 13 C 1.52992 * 109.47090 * 239.99701 * 2 1 3 14 14 N 1.46900 * 109.47379 * 65.00059 * 13 2 1 15 15 C 1.46892 * 111.00161 * 182.99717 * 14 13 2 16 16 C 1.50697 * 115.55415 * 294.47392 * 15 14 13 17 17 C 1.38244 * 119.97543 * 308.87926 * 16 15 14 18 18 C 1.38195 * 120.02688 * 180.27402 * 17 16 15 19 19 C 1.38461 * 119.97686 * 359.97438 * 18 17 16 20 20 F 1.35100 * 120.02678 * 180.02562 * 19 18 17 21 21 C 1.38465 * 119.94664 * 359.97438 * 19 18 17 22 22 C 1.38199 * 119.97280 * 0.02562 * 21 19 18 23 23 C 1.53009 * 117.51605 * 80.17649 * 15 14 13 24 24 C 1.52997 * 60.00083 * 107.48339 * 23 15 14 25 25 H 1.09002 * 109.46622 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47208 * 299.99941 * 1 2 3 27 27 H 1.08992 * 109.47068 * 60.00638 * 1 2 3 28 28 H 1.09002 * 109.47114 * 55.00660 * 4 2 1 29 29 H 1.09001 * 109.46749 * 175.00356 * 4 2 1 30 30 H 0.96992 * 120.00088 * 180.02562 * 8 7 5 31 31 H 1.09003 * 109.47395 * 304.99436 * 13 2 1 32 32 H 1.09006 * 109.46894 * 185.00272 * 13 2 1 33 33 H 1.00902 * 110.99662 * 59.04585 * 14 13 2 34 34 H 1.08003 * 119.98220 * 0.26812 * 17 16 15 35 35 H 1.08005 * 120.00921 * 179.97438 * 18 17 16 36 36 H 1.07994 * 120.01009 * 179.97438 * 21 19 18 37 37 H 1.07998 * 119.98323 * 180.02562 * 22 21 19 38 38 H 1.09001 * 117.49791 * 214.97008 * 23 15 14 39 39 H 1.08994 * 117.49873 * 359.97438 * 23 15 14 40 40 H 1.08999 * 117.49535 * 252.51569 * 24 23 15 41 41 H 1.09002 * 117.50336 * 107.48965 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6413 0.0573 2.4766 6 1 1.0799 0.9743 2.3757 7 6 1.9932 -0.4015 3.7283 8 7 2.6764 -1.5186 3.8513 9 14 1.4984 0.5630 5.2496 10 1 0.0183 0.6684 5.3092 11 1 1.9935 -0.1369 6.4622 12 1 2.0894 1.9238 5.1871 13 6 2.0400 -0.7213 -1.2491 14 7 1.6514 0.0373 -2.4456 15 6 2.0632 -0.6628 -3.6696 16 6 3.5504 -0.7925 -3.8752 17 6 4.3601 0.3245 -3.7854 18 6 5.7233 0.2077 -3.9795 19 6 6.2784 -1.0286 -4.2634 20 9 7.6110 -1.1439 -4.4527 21 6 5.4666 -2.1468 -4.3520 22 6 4.1035 -2.0276 -4.1576 23 6 1.1796 -1.8128 -4.1574 24 6 1.1910 -0.4829 -4.9138 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 1.6054 -1.7198 1.2953 29 1 3.1263 -0.7993 1.2057 30 1 2.9236 -1.8414 4.7319 31 1 1.6055 -1.7199 -1.2950 32 1 3.1264 -0.7995 -1.2054 33 1 2.0294 0.9725 -2.4194 34 1 3.9269 1.2887 -3.5637 35 1 6.3556 1.0806 -3.9097 36 1 5.8983 -3.1115 -4.5738 37 1 3.4702 -2.8997 -4.2263 38 1 1.6741 -2.6631 -4.6270 39 1 0.2928 -2.0503 -3.5699 40 1 0.3116 0.1547 -4.8239 41 1 1.6930 -0.4582 -5.8810 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602543844.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:37 Heat of formation + Delta-G solvation = -12.313112 kcal Electronic energy + Delta-G solvation = -21035.720022 eV Core-core repulsion = 17829.940533 eV Total energy + Delta-G solvation = -3205.779489 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.00078 -39.96115 -37.40761 -35.65234 -32.81122 -31.48838 -30.89781 -30.14919 -26.79761 -25.28911 -23.51239 -23.30543 -22.39348 -22.06479 -19.76762 -19.04360 -17.94065 -16.67661 -16.33199 -16.26475 -15.70315 -15.09955 -14.77965 -14.48727 -14.39996 -14.00600 -13.74180 -13.41930 -13.30155 -12.64725 -12.55083 -12.26448 -12.16138 -11.57209 -11.46874 -11.32585 -11.18166 -10.88599 -10.82262 -10.64258 -10.29535 -10.23164 -10.10682 -9.69346 -9.26553 -9.15992 -8.96138 -8.60785 -8.31443 -8.29195 -5.96171 -3.97492 0.96841 1.07811 3.35125 3.35541 3.39581 3.41906 3.75839 4.10861 4.16922 4.41887 4.49612 4.59610 4.72253 4.89456 5.05119 5.22502 5.33806 5.39415 5.42375 5.58557 5.70329 5.72453 5.81939 5.87217 5.96629 5.97827 6.09889 6.14756 6.17326 6.31803 6.43245 6.55650 6.68014 6.72902 7.01012 7.17081 7.20004 7.34197 7.57332 7.70850 7.86582 8.03882 8.47624 9.08702 9.65803 11.15328 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017423 B = 0.004060 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.726911 B = 6895.255866 C = 7942.794741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.082 4.082 3 H 0.053 0.947 4 C 0.029 3.971 5 C -0.513 4.513 6 H 0.055 0.945 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.067 3.933 14 N -0.642 5.642 15 C 0.069 3.931 16 C -0.077 4.077 17 C -0.081 4.081 18 C -0.150 4.150 19 C 0.092 3.908 20 F -0.142 7.142 21 C -0.151 4.151 22 C -0.083 4.083 23 C -0.158 4.158 24 C -0.150 4.150 25 H 0.039 0.961 26 H 0.053 0.947 27 H 0.041 0.959 28 H 0.016 0.984 29 H 0.012 0.988 30 H 0.260 0.740 31 H 0.067 0.933 32 H 0.026 0.974 33 H 0.340 0.660 34 H 0.131 0.869 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.970 0.744 -19.975 20.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.071 0.929 4 C -0.009 4.009 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.061 4.061 14 N -0.271 5.271 15 C -0.023 4.023 16 C -0.079 4.079 17 C -0.100 4.100 18 C -0.168 4.168 19 C 0.073 3.927 20 F -0.121 7.121 21 C -0.170 4.170 22 C -0.102 4.102 23 C -0.195 4.195 24 C -0.188 4.188 25 H 0.058 0.942 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.034 0.966 29 H 0.030 0.970 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.045 0.955 33 H 0.159 0.841 34 H 0.149 0.851 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.112 0.888 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.434 0.378 -19.830 19.886 hybrid contribution 1.158 0.555 1.045 1.656 sum 2.593 0.933 -18.786 18.987 Atomic orbital electron populations 1.21586 0.95741 1.00519 1.00116 1.21199 0.95948 0.98903 0.94014 0.92893 1.19103 0.95888 0.95533 0.90375 1.21195 1.34656 1.08301 0.90997 0.92637 1.25016 0.95322 0.95083 0.99065 1.69956 1.39028 1.21220 1.23467 0.86700 0.78904 0.80105 0.82529 1.20262 1.21373 1.20324 1.22122 0.97494 0.97662 0.88791 1.60563 1.61768 1.05026 0.99726 1.20049 0.86137 1.03265 0.92882 1.19835 0.95238 0.93269 0.99577 1.20791 0.92314 0.98804 0.98046 1.21116 0.96072 0.96576 1.03070 1.17730 0.77382 0.94893 1.02729 1.91492 1.30958 1.96859 1.92793 1.21137 0.94073 0.98069 1.03725 1.20958 0.93884 0.97569 0.97777 1.23089 1.01841 0.91745 1.02851 1.23090 1.01437 1.00129 0.94110 0.94212 0.92791 0.93980 0.96609 0.96986 0.93049 0.91472 0.95539 0.84139 0.85150 0.84708 0.84757 0.84829 0.88761 0.87721 0.87836 0.88992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.34 8.89 37.16 0.33 -2.01 16 2 C -0.08 -1.65 2.51 -90.62 -0.23 -1.88 16 3 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 4 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 5 C -0.51 -14.41 8.41 -34.44 -0.29 -14.70 16 6 H 0.06 1.51 7.06 -52.49 -0.37 1.14 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -27.15 13.29 55.43 0.74 -26.42 16 9 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.07 1.15 4.86 -3.83 -0.02 1.13 16 14 N -0.64 -8.83 6.00 -101.14 -0.61 -9.44 16 15 C 0.07 0.81 1.98 -132.75 -0.26 0.55 16 16 C -0.08 -0.90 4.67 -104.62 -0.49 -1.39 16 17 C -0.08 -0.92 9.48 -39.59 -0.38 -1.30 16 18 C -0.15 -1.70 10.03 -39.51 -0.40 -2.10 16 19 C 0.09 1.11 7.30 -39.42 -0.29 0.82 16 20 F -0.14 -1.80 17.27 2.25 0.04 -1.76 16 21 C -0.15 -1.68 10.03 -39.51 -0.40 -2.08 16 22 C -0.08 -0.93 9.32 -39.59 -0.37 -1.30 16 23 C -0.16 -1.66 9.70 -26.73 -0.26 -1.92 16 24 C -0.15 -1.47 10.16 -26.73 -0.27 -1.74 16 25 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 27 H 0.04 0.71 7.75 -51.93 -0.40 0.31 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.07 1.19 8.13 -51.93 -0.42 0.77 16 32 H 0.03 0.48 7.69 -51.93 -0.40 0.08 16 33 H 0.34 4.43 8.12 -39.29 -0.32 4.11 16 34 H 0.13 1.30 7.54 -52.48 -0.40 0.91 16 35 H 0.14 1.29 8.06 -52.48 -0.42 0.87 16 36 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 37 H 0.13 1.27 6.28 -52.49 -0.33 0.94 16 38 H 0.09 0.84 6.43 -51.93 -0.33 0.51 16 39 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 342.02 15.07 5.15 5.15 Total: -1.00 -30.16 342.02 -9.50 -39.66 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -6.27 Total: 1.83 kcal Atomic # 6 Polarization: -22.25 SS G_CDS: -3.53 Total: -25.79 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: 0.13 Total: -35.85 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.16 -9.50 -39.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602543844.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.347 kcal (2) G-P(sol) polarization free energy of solvation -30.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds