Wall clock time and date at job start Mon Mar 30 2020 02:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46874 * 2 1 4 4 C 1.53006 * 109.46941 * 119.99477 * 2 1 3 5 5 C 1.50699 * 109.47037 * 295.00036 * 4 2 1 6 6 H 1.07998 * 120.00257 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99438 * 180.02562 * 5 4 2 8 8 N 1.31519 * 120.00532 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99694 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.47063 * 59.99959 * 9 7 5 11 11 H 1.48504 * 109.47140 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47576 * 300.00001 * 9 7 5 13 13 C 1.52992 * 109.47090 * 239.99701 * 2 1 3 14 14 N 1.46900 * 109.47379 * 65.00059 * 13 2 1 15 15 C 1.46892 * 111.00161 * 182.99717 * 14 13 2 16 16 C 1.50697 * 115.55415 * 294.47392 * 15 14 13 17 17 C 1.38244 * 119.97543 * 308.87926 * 16 15 14 18 18 C 1.38195 * 120.02688 * 180.27402 * 17 16 15 19 19 C 1.38461 * 119.97686 * 359.97438 * 18 17 16 20 20 F 1.35100 * 120.02678 * 180.02562 * 19 18 17 21 21 C 1.38465 * 119.94664 * 359.97438 * 19 18 17 22 22 C 1.38199 * 119.97280 * 0.02562 * 21 19 18 23 23 C 1.53009 * 117.51605 * 80.17649 * 15 14 13 24 24 C 1.52997 * 60.00083 * 107.48339 * 23 15 14 25 25 H 1.09002 * 109.46622 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47208 * 299.99941 * 1 2 3 27 27 H 1.08992 * 109.47068 * 60.00638 * 1 2 3 28 28 H 1.09002 * 109.47114 * 55.00660 * 4 2 1 29 29 H 1.09001 * 109.46749 * 175.00356 * 4 2 1 30 30 H 0.96992 * 120.00088 * 180.02562 * 8 7 5 31 31 H 1.09003 * 109.47395 * 304.99436 * 13 2 1 32 32 H 1.09006 * 109.46894 * 185.00272 * 13 2 1 33 33 H 1.00902 * 110.99662 * 59.04585 * 14 13 2 34 34 H 1.08003 * 119.98220 * 0.26812 * 17 16 15 35 35 H 1.08005 * 120.00921 * 179.97438 * 18 17 16 36 36 H 1.07994 * 120.01009 * 179.97438 * 21 19 18 37 37 H 1.07998 * 119.98323 * 180.02562 * 22 21 19 38 38 H 1.09001 * 117.49791 * 214.97008 * 23 15 14 39 39 H 1.08994 * 117.49873 * 359.97438 * 23 15 14 40 40 H 1.08999 * 117.49535 * 252.51569 * 24 23 15 41 41 H 1.09002 * 117.50336 * 107.48965 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6413 0.0573 2.4766 6 1 1.0799 0.9743 2.3757 7 6 1.9932 -0.4015 3.7283 8 7 2.6764 -1.5186 3.8513 9 14 1.4984 0.5630 5.2496 10 1 0.0183 0.6684 5.3092 11 1 1.9935 -0.1369 6.4622 12 1 2.0894 1.9238 5.1871 13 6 2.0400 -0.7213 -1.2491 14 7 1.6514 0.0373 -2.4456 15 6 2.0632 -0.6628 -3.6696 16 6 3.5504 -0.7925 -3.8752 17 6 4.3601 0.3245 -3.7854 18 6 5.7233 0.2077 -3.9795 19 6 6.2784 -1.0286 -4.2634 20 9 7.6110 -1.1439 -4.4527 21 6 5.4666 -2.1468 -4.3520 22 6 4.1035 -2.0276 -4.1576 23 6 1.1796 -1.8128 -4.1574 24 6 1.1910 -0.4829 -4.9138 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 1.6054 -1.7198 1.2953 29 1 3.1263 -0.7993 1.2057 30 1 2.9236 -1.8414 4.7319 31 1 1.6055 -1.7199 -1.2950 32 1 3.1264 -0.7995 -1.2054 33 1 2.0294 0.9725 -2.4194 34 1 3.9269 1.2887 -3.5637 35 1 6.3556 1.0806 -3.9097 36 1 5.8983 -3.1115 -4.5738 37 1 3.4702 -2.8997 -4.2263 38 1 1.6741 -2.6631 -4.6270 39 1 0.2928 -2.0503 -3.5699 40 1 0.3116 0.1547 -4.8239 41 1 1.6930 -0.4582 -5.8810 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602543844.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:37 Heat of formation + Delta-G solvation = -28.113931 kcal Electronic energy + Delta-G solvation = -21036.405197 eV Core-core repulsion = 17829.940533 eV Total energy + Delta-G solvation = -3206.464664 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.94144 -40.85927 -38.46618 -37.13474 -34.70739 -32.77344 -31.98736 -31.05791 -28.77164 -26.78837 -24.82701 -24.20491 -23.83193 -22.93189 -20.84398 -20.56785 -18.84159 -18.47201 -17.62322 -17.22835 -16.64580 -16.55601 -15.99802 -15.83951 -15.55514 -15.51034 -14.64693 -14.54862 -14.28417 -14.21725 -13.91596 -13.65740 -13.32123 -13.17107 -12.92646 -12.74745 -12.56889 -12.28578 -12.19044 -12.08676 -11.99455 -11.60892 -11.39158 -11.12161 -11.04852 -10.80559 -10.52564 -10.12000 -9.57516 -9.40976 -8.16823 -6.26225 0.07547 0.22391 1.40427 1.43160 1.50801 2.42328 2.49100 2.85369 3.16498 3.17672 3.24365 3.54664 3.76626 3.90372 4.05267 4.16099 4.23081 4.32546 4.42313 4.45529 4.55415 4.61091 4.82103 4.88990 4.92137 4.93081 5.02271 5.04135 5.09600 5.12731 5.23136 5.30051 5.37213 5.44397 5.48216 5.52575 5.57963 5.82072 5.86619 5.89422 6.08997 6.31591 6.47160 6.89883 7.42216 8.95110 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017423 B = 0.004060 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.726911 B = 6895.255866 C = 7942.794741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.073 4.073 3 H 0.053 0.947 4 C 0.034 3.966 5 C -0.529 4.529 6 H 0.062 0.938 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.960 3.040 10 H -0.266 1.266 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.087 3.913 14 N -0.636 5.636 15 C 0.052 3.948 16 C -0.084 4.084 17 C -0.090 4.090 18 C -0.155 4.155 19 C 0.072 3.928 20 F -0.149 7.149 21 C -0.154 4.154 22 C -0.090 4.090 23 C -0.159 4.159 24 C -0.129 4.129 25 H 0.034 0.966 26 H 0.036 0.964 27 H 0.069 0.931 28 H -0.012 1.012 29 H -0.018 1.018 30 H 0.261 0.739 31 H 0.060 0.940 32 H 0.010 0.990 33 H 0.345 0.655 34 H 0.142 0.858 35 H 0.148 0.852 36 H 0.151 0.849 37 H 0.149 0.851 38 H 0.110 0.890 39 H 0.095 0.905 40 H 0.107 0.893 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.972 1.705 -20.936 21.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.092 4.092 3 H 0.072 0.928 4 C -0.004 4.004 5 C -0.567 4.567 6 H 0.080 0.920 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.785 3.215 10 H -0.191 1.191 11 H -0.211 1.211 12 H -0.192 1.192 13 C -0.042 4.042 14 N -0.265 5.265 15 C -0.040 4.040 16 C -0.086 4.086 17 C -0.108 4.108 18 C -0.174 4.174 19 C 0.053 3.947 20 F -0.128 7.128 21 C -0.173 4.173 22 C -0.108 4.108 23 C -0.196 4.196 24 C -0.167 4.167 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.088 0.912 28 H 0.007 0.993 29 H 0.000 1.000 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.029 0.971 33 H 0.165 0.835 34 H 0.160 0.840 35 H 0.166 0.834 36 H 0.169 0.831 37 H 0.167 0.833 38 H 0.128 0.872 39 H 0.114 0.886 40 H 0.125 0.875 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.428 1.354 -20.815 20.863 hybrid contribution 1.482 0.232 1.299 1.984 sum 1.910 1.586 -19.516 19.673 Atomic orbital electron populations 1.21474 0.94500 1.00334 1.00580 1.21004 0.96801 0.98359 0.93033 0.92823 1.18990 0.93827 0.94665 0.92876 1.21614 1.34423 1.08621 0.92038 0.91994 1.25952 0.95232 0.96066 1.02658 1.70100 1.40319 1.23004 1.24303 0.85575 0.78995 0.78773 0.78166 1.19126 1.21102 1.19235 1.21710 0.96158 0.97232 0.89084 1.60457 1.61691 1.05091 0.99260 1.20111 0.86512 1.04647 0.92743 1.19936 0.95306 0.93656 0.99717 1.20988 0.92361 0.99407 0.98060 1.21328 0.96418 0.96942 1.02680 1.17989 0.77298 0.95679 1.03729 1.91470 1.31447 1.96929 1.92972 1.21375 0.94150 0.98612 1.03142 1.21180 0.94093 0.97975 0.97560 1.23179 1.01177 0.92493 1.02772 1.23138 1.00653 0.99210 0.93677 0.94712 0.94464 0.91202 0.99326 1.00014 0.92983 0.92181 0.97129 0.83537 0.83984 0.83388 0.83106 0.83292 0.87163 0.88613 0.87508 0.87441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.17 8.89 71.98 0.64 -3.53 16 2 C -0.07 -2.95 2.51 -10.79 -0.03 -2.98 16 3 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 4 C 0.03 1.80 4.45 29.85 0.13 1.94 16 5 C -0.53 -30.02 8.41 25.60 0.22 -29.81 16 6 H 0.06 3.36 7.06 -2.91 -0.02 3.34 16 7 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 8 N -0.94 -57.83 13.29 21.45 0.28 -57.55 16 9 Si 0.96 44.63 29.54 68.60 2.03 46.66 16 10 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 11 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 13 C 0.09 2.95 4.86 86.30 0.42 3.37 16 14 N -0.64 -16.47 6.00 -473.90 -2.84 -19.31 16 15 C 0.05 1.12 1.98 2.79 0.01 1.12 16 16 C -0.08 -1.85 4.67 -19.86 -0.09 -1.94 16 17 C -0.09 -1.94 9.48 22.26 0.21 -1.73 16 18 C -0.16 -3.41 10.03 22.31 0.22 -3.18 16 19 C 0.07 1.71 7.30 22.38 0.16 1.87 16 20 F -0.15 -3.74 17.27 44.97 0.78 -2.96 16 21 C -0.15 -3.27 10.03 22.31 0.22 -3.05 16 22 C -0.09 -1.87 9.32 22.26 0.21 -1.66 16 23 C -0.16 -2.98 9.70 30.60 0.30 -2.69 16 24 C -0.13 -2.17 10.16 30.59 0.31 -1.86 16 25 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.04 1.49 6.95 -2.39 -0.02 1.47 16 27 H 0.07 2.21 7.75 -2.39 -0.02 2.19 16 28 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 29 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 30 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 31 H 0.06 2.12 8.13 -2.39 -0.02 2.10 16 32 H 0.01 0.39 7.69 -2.38 -0.02 0.37 16 33 H 0.35 8.37 8.12 -89.69 -0.73 7.65 16 34 H 0.14 2.63 7.54 -2.91 -0.02 2.61 16 35 H 0.15 2.72 8.06 -2.91 -0.02 2.69 16 36 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 37 H 0.15 2.54 6.28 -2.91 -0.02 2.52 16 38 H 0.11 1.69 6.43 -2.39 -0.02 1.68 16 39 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -65.11 342.02 3.93 -61.18 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.29 Total: 15.76 kcal Atomic # 6 Polarization: -47.17 SS G_CDS: 3.39 Total: -43.78 kcal Atomic # 7 Polarization: -74.31 SS G_CDS: -2.56 Total: -76.86 kcal Atomic # 9 Polarization: -3.74 SS G_CDS: 0.78 Total: -2.96 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -65.11 3.93 -61.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602543844.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.066 kcal (2) G-P(sol) polarization free energy of solvation -65.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds