Wall clock time and date at job start Mon Mar 30 2020 02:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46818 * 2 1 4 4 C 1.52999 * 109.46461 * 240.00512 * 2 1 3 5 5 C 1.50695 * 109.47573 * 65.00045 * 4 2 1 6 6 H 1.08000 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00088 * 179.97438 * 5 4 2 8 8 N 1.31506 * 120.00112 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99812 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47368 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47112 * 119.99862 * 9 7 5 12 12 H 1.48499 * 109.47059 * 240.00016 * 9 7 5 13 13 C 1.52997 * 109.47224 * 120.00491 * 2 1 3 14 14 N 1.46901 * 109.47089 * 294.99696 * 13 2 1 15 15 C 1.46900 * 110.99939 * 185.29292 * 14 13 2 16 16 C 1.50699 * 115.55275 * 294.83001 * 15 14 13 17 17 C 1.38268 * 119.98345 * 276.68642 * 16 15 14 18 18 C 1.38225 * 120.05125 * 179.72511 * 17 16 15 19 19 C 1.38215 * 120.02555 * 0.29400 * 18 17 16 20 20 C 1.38445 * 119.97347 * 359.97438 * 19 18 17 21 21 F 1.35102 * 120.02658 * 180.02562 * 20 19 18 22 22 C 1.38175 * 119.99208 * 96.95768 * 16 15 14 23 23 C 1.53005 * 117.49713 * 80.49728 * 15 14 13 24 24 C 1.53003 * 117.49773 * 149.15483 * 15 14 13 25 25 H 1.08994 * 109.47101 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46737 * 299.99726 * 1 2 3 27 27 H 1.09000 * 109.46944 * 59.99341 * 1 2 3 28 28 H 1.09004 * 109.47039 * 185.00244 * 4 2 1 29 29 H 1.08999 * 109.47526 * 304.99581 * 4 2 1 30 30 H 0.97007 * 120.00219 * 180.02562 * 8 7 5 31 31 H 1.08995 * 109.46926 * 174.99743 * 13 2 1 32 32 H 1.09008 * 109.46933 * 54.99648 * 13 2 1 33 33 H 1.00897 * 110.99717 * 309.25205 * 14 13 2 34 34 H 1.07997 * 119.97630 * 359.97438 * 17 16 15 35 35 H 1.07996 * 119.98572 * 180.27706 * 18 17 16 36 36 H 1.07997 * 120.01878 * 179.97438 * 19 18 17 37 37 H 1.08001 * 120.01005 * 0.02562 * 22 16 15 38 38 H 1.08996 * 117.49647 * 214.99894 * 23 15 14 39 39 H 1.08998 * 117.49460 * 0.02562 * 23 15 14 40 40 H 1.08995 * 117.49598 * 359.97438 * 24 15 14 41 41 H 1.08996 * 117.49515 * 144.97676 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6412 0.0572 -2.4766 6 1 1.0799 0.9743 -2.3756 7 6 1.9930 -0.4016 -3.7283 8 7 2.6770 -1.5180 -3.8513 9 14 1.4994 0.5637 -5.2495 10 1 0.7420 1.7746 -4.8433 11 1 2.7178 0.9685 -5.9958 12 1 0.6456 -0.2851 -6.1189 13 6 2.0401 -0.7213 1.2491 14 7 1.6515 0.0373 2.4456 15 6 2.2309 -0.5577 3.6573 16 6 1.7365 -1.9384 4.0038 17 6 0.5533 -2.0937 4.7022 18 6 0.0956 -3.3597 5.0158 19 6 0.8235 -4.4718 4.6368 20 6 2.0112 -4.3174 3.9424 21 9 2.7233 -5.4038 3.5709 22 6 2.4686 -3.0486 3.6285 23 6 3.6907 -0.2291 3.9771 24 6 2.5664 0.3840 4.8157 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 3.1263 -0.7995 -1.2058 29 1 1.6053 -1.7197 -1.2953 30 1 2.9248 -1.8406 -4.7319 31 1 3.1263 -0.7996 1.2054 32 1 1.6054 -1.7199 1.2950 33 1 1.9127 1.0080 2.3589 34 1 -0.0158 -1.2253 4.9994 35 1 -0.8310 -3.4799 5.5574 36 1 0.4661 -5.4609 4.8822 37 1 3.3952 -2.9269 3.0872 38 1 4.2933 -1.0117 4.4381 39 1 4.2209 0.4288 3.2885 40 1 2.3576 1.4449 4.6784 41 1 2.4290 0.0048 5.8283 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602554081.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:40 Heat of formation + Delta-G solvation = -12.406625 kcal Electronic energy + Delta-G solvation = -21159.339395 eV Core-core repulsion = 17953.555851 eV Total energy + Delta-G solvation = -3205.783544 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.89636 -39.89498 -37.61708 -35.65932 -32.72714 -31.02156 -30.91486 -30.40253 -26.78963 -25.24898 -23.74328 -23.24140 -22.43715 -21.94756 -20.01208 -19.05234 -17.31004 -16.32326 -16.22373 -16.19321 -15.77925 -15.49037 -15.33668 -14.47141 -14.15917 -14.03872 -13.75313 -13.27348 -13.10304 -12.63002 -12.33321 -12.21064 -11.88842 -11.84480 -11.60966 -11.43346 -11.24526 -10.96947 -10.82836 -10.59800 -10.48287 -10.28759 -10.09793 -9.70855 -9.22314 -9.03605 -8.93573 -8.72706 -8.32529 -8.10962 -5.96787 -3.98071 1.07254 1.12928 3.32502 3.40105 3.43887 3.47011 3.56715 4.07449 4.29650 4.46419 4.51016 4.68265 4.86396 4.90396 4.92326 5.13628 5.32275 5.39057 5.41682 5.51100 5.71581 5.74296 5.80604 5.89299 5.96392 5.98672 6.03036 6.14406 6.20463 6.42726 6.44408 6.53285 6.65741 6.80651 7.00288 7.16193 7.18410 7.29886 7.56656 7.70289 7.85546 8.03269 8.46877 9.08498 9.65395 11.14765 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019179 B = 0.004058 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.568409 B = 6897.944384 C = 7543.605819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.084 4.084 3 H 0.053 0.947 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.057 0.943 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.066 3.934 14 N -0.643 5.643 15 C 0.091 3.909 16 C -0.003 4.003 17 C -0.105 4.105 18 C -0.094 4.094 19 C -0.156 4.156 20 C 0.097 3.903 21 F -0.140 7.140 22 C -0.141 4.141 23 C -0.212 4.212 24 C -0.163 4.163 25 H 0.040 0.960 26 H 0.041 0.959 27 H 0.054 0.946 28 H 0.012 0.988 29 H 0.016 0.984 30 H 0.259 0.741 31 H 0.028 0.972 32 H 0.068 0.932 33 H 0.344 0.656 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.001 -1.038 20.681 20.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.103 4.103 3 H 0.071 0.929 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.075 0.925 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.062 4.062 14 N -0.272 5.272 15 C -0.001 4.001 16 C -0.004 4.004 17 C -0.124 4.124 18 C -0.112 4.112 19 C -0.175 4.175 20 C 0.078 3.922 21 F -0.119 7.119 22 C -0.160 4.160 23 C -0.252 4.252 24 C -0.200 4.200 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.031 0.969 29 H 0.035 0.965 30 H 0.069 0.931 31 H 0.046 0.954 32 H 0.086 0.914 33 H 0.163 0.837 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.520 -1.504 20.570 20.779 hybrid contribution 0.937 0.458 -1.202 1.591 sum -1.583 -1.046 19.368 19.461 Atomic orbital electron populations 1.21598 0.95660 1.00673 1.00124 1.21238 0.96062 0.98826 0.94126 0.92856 1.19112 0.95910 0.95602 0.90348 1.21263 1.34543 1.08289 0.90960 0.92519 1.25019 0.95336 0.95082 0.99098 1.69977 1.39079 1.21278 1.23268 0.86581 0.78241 0.80142 0.83320 1.19746 1.21118 1.21076 1.22168 0.97469 0.97972 0.88600 1.60341 1.60661 1.05854 1.00363 1.20082 0.94248 0.92111 0.93693 1.18569 0.94159 0.91635 0.96059 1.21037 0.95482 0.97560 0.98312 1.20979 0.99415 0.91646 0.99208 1.21140 0.94703 1.00503 1.01183 1.17640 0.91928 0.83017 0.99625 1.91506 1.77617 1.53069 1.89704 1.21050 1.02100 0.90616 1.02219 1.23671 0.92801 1.04294 1.04409 1.23185 1.02247 0.98840 0.95769 0.94098 0.94005 0.92702 0.96927 0.96538 0.93146 0.95411 0.91370 0.83735 0.85137 0.85008 0.84929 0.84790 0.88672 0.88440 0.88242 0.88321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 8.89 37.16 0.33 -2.07 16 2 C -0.08 -1.70 2.43 -90.62 -0.22 -1.92 16 3 H 0.05 1.08 8.12 -51.93 -0.42 0.66 16 4 C 0.03 0.72 4.45 -27.89 -0.12 0.59 16 5 C -0.51 -14.41 8.41 -34.44 -0.29 -14.70 16 6 H 0.06 1.56 7.06 -52.49 -0.37 1.18 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 9 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 C 0.07 1.14 4.79 -3.82 -0.02 1.12 16 14 N -0.64 -9.08 6.15 -101.13 -0.62 -9.71 16 15 C 0.09 1.10 1.86 -132.75 -0.25 0.86 16 16 C 0.00 -0.04 4.58 -104.63 -0.48 -0.52 16 17 C -0.11 -1.16 9.67 -39.58 -0.38 -1.54 16 18 C -0.09 -0.93 10.04 -39.59 -0.40 -1.33 16 19 C -0.16 -1.70 10.03 -39.51 -0.40 -2.10 16 20 C 0.10 1.26 7.30 -39.42 -0.29 0.97 16 21 F -0.14 -1.96 17.27 2.25 0.04 -1.92 16 22 C -0.14 -1.86 9.01 -39.52 -0.36 -2.21 16 23 C -0.21 -2.32 9.77 -26.69 -0.26 -2.58 16 24 C -0.16 -1.58 9.93 -26.69 -0.27 -1.85 16 25 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.04 0.72 7.75 -51.93 -0.40 0.32 16 27 H 0.05 1.14 6.95 -51.93 -0.36 0.78 16 28 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.03 0.49 8.09 -51.93 -0.42 0.07 16 32 H 0.07 1.27 7.50 -51.92 -0.39 0.89 16 33 H 0.34 4.52 8.52 -39.29 -0.33 4.19 16 34 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.13 1.78 8.00 -52.49 -0.42 1.36 16 38 H 0.09 1.00 8.07 -51.93 -0.42 0.58 16 39 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 345.57 15.07 5.21 5.21 Total: -1.00 -30.34 345.57 -9.63 -39.97 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -6.48 Total: 1.89 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: -3.49 Total: -25.77 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: 0.11 Total: -36.16 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.34 -9.63 -39.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602554081.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.567 kcal (2) G-P(sol) polarization free energy of solvation -30.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds