Wall clock time and date at job start Mon Mar 30 2020 02:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47062 * 2 1 4 4 C 1.53004 * 109.46921 * 119.99417 * 2 1 3 5 5 C 1.50699 * 109.47515 * 295.00345 * 4 2 1 6 6 H 1.07999 * 119.99453 * 359.97438 * 5 4 2 7 7 C 1.37869 * 120.00147 * 179.97438 * 5 4 2 8 8 N 1.31521 * 119.99725 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00199 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46978 * 90.00212 * 9 7 5 11 11 H 1.48506 * 109.47402 * 209.99834 * 9 7 5 12 12 H 1.48496 * 109.47355 * 330.00326 * 9 7 5 13 13 C 1.52998 * 109.47602 * 239.99367 * 2 1 3 14 14 N 1.46904 * 109.46854 * 65.00394 * 13 2 1 15 15 C 1.46903 * 111.00027 * 185.17725 * 14 13 2 16 16 C 1.50696 * 115.54630 * 294.30509 * 15 14 13 17 17 C 1.38219 * 120.01444 * 93.94033 * 16 15 14 18 18 C 1.38229 * 120.02928 * 180.02562 * 17 16 15 19 19 C 1.38269 * 120.04804 * 359.94904 * 18 17 16 20 20 C 1.38178 * 120.02459 * 0.04604 * 19 18 17 21 21 C 1.38436 * 120.01229 * 273.95346 * 16 15 14 22 22 F 1.35096 * 120.03063 * 0.02562 * 21 16 15 23 23 C 1.53002 * 117.50013 * 79.97546 * 15 14 13 24 24 C 1.53003 * 117.49982 * 148.63481 * 15 14 13 25 25 H 1.09005 * 109.46519 * 60.00430 * 1 2 3 26 26 H 1.08999 * 109.47062 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47233 * 300.00201 * 1 2 3 28 28 H 1.09002 * 109.46919 * 55.00346 * 4 2 1 29 29 H 1.09004 * 109.47152 * 175.00131 * 4 2 1 30 30 H 0.97001 * 119.99479 * 180.02562 * 8 7 5 31 31 H 1.08999 * 109.47387 * 305.00323 * 13 2 1 32 32 H 1.09001 * 109.47549 * 185.00323 * 13 2 1 33 33 H 1.00893 * 111.00184 * 61.21815 * 14 13 2 34 34 H 1.08005 * 119.98759 * 0.02562 * 17 16 15 35 35 H 1.07996 * 119.97879 * 179.97438 * 18 17 16 36 36 H 1.08001 * 119.98589 * 180.02562 * 19 18 17 37 37 H 1.08004 * 120.00933 * 180.25145 * 20 19 18 38 38 H 1.09003 * 117.49673 * 215.00774 * 23 15 14 39 39 H 1.09003 * 117.49721 * 0.02562 * 23 15 14 40 40 H 1.08998 * 117.49445 * 359.97438 * 24 15 14 41 41 H 1.08993 * 117.49628 * 144.97314 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 1.6412 0.0572 2.4767 6 1 1.0805 0.9747 2.3756 7 6 1.9922 -0.4020 3.7284 8 7 1.6446 0.2776 4.7994 9 14 2.9613 -1.9893 3.9031 10 1 4.4150 -1.6869 3.8791 11 1 2.6129 -2.6430 5.1903 12 1 2.6266 -2.9000 2.7790 13 6 2.0401 -0.7214 -1.2491 14 7 1.6516 0.0373 -2.4456 15 6 2.0173 -0.6872 -3.6701 16 6 3.4956 -0.8615 -3.9051 17 6 4.1322 -2.0126 -3.4806 18 6 5.4883 -2.1725 -3.6956 19 6 6.2093 -1.1818 -4.3363 20 6 5.5750 -0.0302 -4.7616 21 6 4.2166 0.1314 -4.5460 22 9 3.5957 1.2573 -4.9607 23 6 1.0915 -1.8169 -4.1258 24 6 1.1245 -0.4954 -4.8978 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.6053 -1.7197 1.2953 29 1 3.1263 -0.7994 1.2058 30 1 1.8919 -0.0454 5.6800 31 1 1.6055 -1.7199 -1.2950 32 1 3.1264 -0.7996 -1.2054 33 1 2.0586 0.9604 -2.4364 34 1 3.5698 -2.7874 -2.9808 35 1 5.9849 -3.0720 -3.3632 36 1 7.2687 -1.3080 -4.5041 37 1 6.1376 0.7417 -5.2657 38 1 1.5517 -2.6862 -4.5956 39 1 0.2108 -2.0222 -3.5172 40 1 0.2656 0.1679 -4.7967 41 1 1.6065 -0.4950 -5.8753 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602559342.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:49 Heat of formation + Delta-G solvation = -7.831187 kcal Electronic energy + Delta-G solvation = -21448.316362 eV Core-core repulsion = 18242.731225 eV Total energy + Delta-G solvation = -3205.585138 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.97441 -39.78081 -37.64919 -35.76243 -32.72391 -31.28102 -30.99051 -30.46410 -27.37282 -25.33458 -23.63176 -23.23051 -22.17552 -21.86850 -19.90514 -19.04257 -17.73810 -16.74603 -16.64991 -16.32430 -15.77822 -15.28010 -14.73763 -14.54372 -14.33510 -14.21956 -13.74904 -13.32622 -13.26677 -12.80149 -12.53062 -12.30941 -12.07881 -11.74633 -11.70076 -11.50163 -11.34358 -10.96902 -10.87974 -10.57664 -10.36205 -10.04622 -9.90600 -9.63803 -9.40792 -9.16163 -9.04063 -8.88073 -8.49810 -8.30793 -6.00204 -3.96879 0.94541 1.00288 3.31764 3.37518 3.39237 3.42830 3.62019 4.05934 4.19421 4.32623 4.48117 4.59554 4.75337 4.89986 5.05184 5.16287 5.28194 5.33382 5.39481 5.59102 5.60547 5.66143 5.81413 5.84202 5.89872 5.95658 6.05674 6.10919 6.16527 6.20211 6.32620 6.44158 6.61264 6.68798 6.86757 7.05568 7.15910 7.25172 7.32017 7.47708 7.56514 7.84818 8.59746 9.05859 9.62781 11.13338 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019007 B = 0.004578 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.791066 B = 6114.510436 C = 6798.506342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.073 4.073 3 H 0.059 0.941 4 C -0.008 4.008 5 C -0.511 4.511 6 H 0.074 0.926 7 C 0.065 3.935 8 N -0.905 5.905 9 Si 0.877 3.123 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.064 3.936 14 N -0.638 5.638 15 C 0.068 3.932 16 C -0.109 4.109 17 C -0.075 4.075 18 C -0.131 4.131 19 C -0.093 4.093 20 C -0.158 4.158 21 C 0.110 3.890 22 F -0.134 7.134 23 C -0.152 4.152 24 C -0.148 4.148 25 H 0.044 0.956 26 H 0.038 0.962 27 H 0.059 0.941 28 H 0.015 0.985 29 H 0.007 0.993 30 H 0.262 0.738 31 H 0.067 0.933 32 H 0.026 0.974 33 H 0.343 0.657 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.134 0.866 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.022 -4.772 -22.239 23.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.092 4.092 3 H 0.077 0.923 4 C -0.046 4.046 5 C -0.549 4.549 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.705 3.295 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.065 4.065 14 N -0.266 5.266 15 C -0.024 4.024 16 C -0.112 4.112 17 C -0.094 4.094 18 C -0.149 4.149 19 C -0.111 4.111 20 C -0.177 4.177 21 C 0.090 3.910 22 F -0.113 7.113 23 C -0.190 4.190 24 C -0.186 4.186 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.078 0.922 28 H 0.034 0.966 29 H 0.025 0.975 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.044 0.956 33 H 0.162 0.838 34 H 0.150 0.850 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.152 0.848 38 H 0.111 0.889 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.321 -4.947 -22.028 23.196 hybrid contribution 1.579 -0.465 0.296 1.672 sum 6.900 -5.411 -21.732 23.435 Atomic orbital electron populations 1.21591 0.95247 1.00550 1.00712 1.20998 0.96360 0.99061 0.92780 0.92270 1.19603 0.95313 0.96203 0.93465 1.21133 1.35258 1.09475 0.89081 0.90825 1.25022 0.95720 0.96867 0.95961 1.69921 1.47280 1.39287 0.97992 0.86816 0.80596 0.84619 0.77463 1.20467 1.21464 1.19080 1.22172 0.97359 0.97711 0.89222 1.60557 1.61587 1.05105 0.99395 1.19925 0.85664 1.03379 0.93428 1.19860 0.96113 0.94578 1.00628 1.21000 0.94549 0.96471 0.97370 1.21238 0.94177 0.99761 0.99761 1.21020 1.00110 0.92800 0.97153 1.21150 0.92857 0.99942 1.03773 1.17581 0.90858 0.83670 0.98912 1.91504 1.82892 1.48877 1.88020 1.23082 1.01281 0.91916 1.02686 1.23055 1.01518 0.99903 0.94109 0.93691 0.94282 0.92246 0.96645 0.97463 0.92857 0.91453 0.95606 0.83823 0.85029 0.85272 0.85116 0.84831 0.88922 0.87696 0.87745 0.89164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.39 8.89 37.16 0.33 -2.06 16 2 C -0.07 -1.46 2.52 -90.62 -0.23 -1.69 16 3 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 4 C -0.01 -0.19 3.52 -27.88 -0.10 -0.29 16 5 C -0.51 -14.59 8.96 -34.44 -0.31 -14.90 16 6 H 0.07 2.26 7.30 -52.49 -0.38 1.88 16 7 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 8 N -0.91 -28.18 13.96 55.43 0.77 -27.40 16 9 Si 0.88 21.95 27.47 -169.99 -4.67 17.28 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 13 C 0.06 1.06 4.71 -3.82 -0.02 1.04 16 14 N -0.64 -9.30 6.03 -101.14 -0.61 -9.91 16 15 C 0.07 0.86 1.48 -132.75 -0.20 0.66 16 16 C -0.11 -1.33 4.66 -104.56 -0.49 -1.82 16 17 C -0.08 -0.84 8.88 -39.59 -0.35 -1.20 16 18 C -0.13 -1.27 10.05 -39.57 -0.40 -1.67 16 19 C -0.09 -0.84 10.04 -39.59 -0.40 -1.24 16 20 C -0.16 -1.62 10.03 -39.51 -0.40 -2.02 16 21 C 0.11 1.34 7.17 -39.42 -0.28 1.05 16 22 F -0.13 -1.75 16.42 2.25 0.04 -1.71 16 23 C -0.15 -1.68 9.87 -26.69 -0.26 -1.95 16 24 C -0.15 -1.65 9.66 -26.69 -0.26 -1.91 16 25 H 0.04 0.78 7.75 -51.93 -0.40 0.38 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 28 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 29 H 0.01 0.17 7.57 -51.93 -0.39 -0.22 16 30 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 31 H 0.07 1.11 8.07 -51.93 -0.42 0.69 16 32 H 0.03 0.44 7.36 -51.93 -0.38 0.06 16 33 H 0.34 5.09 8.87 -39.30 -0.35 4.74 16 34 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 35 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 38 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 341.00 15.07 5.14 5.14 Total: -1.00 -30.76 341.00 -9.24 -39.99 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -6.46 Total: 2.78 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: -3.45 Total: -26.18 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 0.16 Total: -37.31 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.28 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.76 -9.24 -39.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602559342.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.163 kcal (2) G-P(sol) polarization free energy of solvation -30.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds