Wall clock time and date at job start Mon Mar 30 2020 02:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47062 * 2 1 4 4 C 1.53004 * 109.46921 * 119.99417 * 2 1 3 5 5 C 1.50699 * 109.47515 * 295.00345 * 4 2 1 6 6 H 1.07999 * 119.99453 * 359.97438 * 5 4 2 7 7 C 1.37869 * 120.00147 * 179.97438 * 5 4 2 8 8 N 1.31521 * 119.99725 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00199 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46978 * 90.00212 * 9 7 5 11 11 H 1.48506 * 109.47402 * 209.99834 * 9 7 5 12 12 H 1.48496 * 109.47355 * 330.00326 * 9 7 5 13 13 C 1.52998 * 109.47602 * 239.99367 * 2 1 3 14 14 N 1.46904 * 109.46854 * 65.00394 * 13 2 1 15 15 C 1.46903 * 111.00027 * 185.17725 * 14 13 2 16 16 C 1.50696 * 115.54630 * 294.30509 * 15 14 13 17 17 C 1.38219 * 120.01444 * 93.94033 * 16 15 14 18 18 C 1.38229 * 120.02928 * 180.02562 * 17 16 15 19 19 C 1.38269 * 120.04804 * 359.94904 * 18 17 16 20 20 C 1.38178 * 120.02459 * 0.04604 * 19 18 17 21 21 C 1.38436 * 120.01229 * 273.95346 * 16 15 14 22 22 F 1.35096 * 120.03063 * 0.02562 * 21 16 15 23 23 C 1.53002 * 117.50013 * 79.97546 * 15 14 13 24 24 C 1.53003 * 117.49982 * 148.63481 * 15 14 13 25 25 H 1.09005 * 109.46519 * 60.00430 * 1 2 3 26 26 H 1.08999 * 109.47062 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47233 * 300.00201 * 1 2 3 28 28 H 1.09002 * 109.46919 * 55.00346 * 4 2 1 29 29 H 1.09004 * 109.47152 * 175.00131 * 4 2 1 30 30 H 0.97001 * 119.99479 * 180.02562 * 8 7 5 31 31 H 1.08999 * 109.47387 * 305.00323 * 13 2 1 32 32 H 1.09001 * 109.47549 * 185.00323 * 13 2 1 33 33 H 1.00893 * 111.00184 * 61.21815 * 14 13 2 34 34 H 1.08005 * 119.98759 * 0.02562 * 17 16 15 35 35 H 1.07996 * 119.97879 * 179.97438 * 18 17 16 36 36 H 1.08001 * 119.98589 * 180.02562 * 19 18 17 37 37 H 1.08004 * 120.00933 * 180.25145 * 20 19 18 38 38 H 1.09003 * 117.49673 * 215.00774 * 23 15 14 39 39 H 1.09003 * 117.49721 * 0.02562 * 23 15 14 40 40 H 1.08998 * 117.49445 * 359.97438 * 24 15 14 41 41 H 1.08993 * 117.49628 * 144.97314 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 1.6412 0.0572 2.4767 6 1 1.0805 0.9747 2.3756 7 6 1.9922 -0.4020 3.7284 8 7 1.6446 0.2776 4.7994 9 14 2.9613 -1.9893 3.9031 10 1 4.4150 -1.6869 3.8791 11 1 2.6129 -2.6430 5.1903 12 1 2.6266 -2.9000 2.7790 13 6 2.0401 -0.7214 -1.2491 14 7 1.6516 0.0373 -2.4456 15 6 2.0173 -0.6872 -3.6701 16 6 3.4956 -0.8615 -3.9051 17 6 4.1322 -2.0126 -3.4806 18 6 5.4883 -2.1725 -3.6956 19 6 6.2093 -1.1818 -4.3363 20 6 5.5750 -0.0302 -4.7616 21 6 4.2166 0.1314 -4.5460 22 9 3.5957 1.2573 -4.9607 23 6 1.0915 -1.8169 -4.1258 24 6 1.1245 -0.4954 -4.8978 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.6053 -1.7197 1.2953 29 1 3.1263 -0.7994 1.2058 30 1 1.8919 -0.0454 5.6800 31 1 1.6055 -1.7199 -1.2950 32 1 3.1264 -0.7996 -1.2054 33 1 2.0586 0.9604 -2.4364 34 1 3.5698 -2.7874 -2.9808 35 1 5.9849 -3.0720 -3.3632 36 1 7.2687 -1.3080 -4.5041 37 1 6.1376 0.7417 -5.2657 38 1 1.5517 -2.6862 -4.5956 39 1 0.2108 -2.0222 -3.5172 40 1 0.2656 0.1679 -4.7967 41 1 1.6065 -0.4950 -5.8753 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602559342.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:49 Heat of formation + Delta-G solvation = -24.997454 kcal Electronic energy + Delta-G solvation = -21449.060748 eV Core-core repulsion = 18242.731225 eV Total energy + Delta-G solvation = -3206.329523 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.87474 -40.64425 -38.63738 -37.24496 -34.67768 -32.79035 -31.80904 -31.25969 -29.29972 -26.78836 -24.70533 -24.08006 -23.71041 -22.82162 -20.93114 -20.60320 -18.92138 -18.57899 -17.56763 -17.17277 -16.69251 -16.40540 -16.15986 -15.90803 -15.48818 -15.40956 -15.05742 -14.84527 -14.24073 -14.15994 -13.95202 -13.55243 -13.32142 -13.12871 -12.85877 -12.81048 -12.49790 -12.34459 -12.20688 -12.11542 -11.87006 -11.63673 -11.41925 -11.28155 -11.09945 -10.77798 -10.73665 -9.97217 -9.73370 -9.42663 -8.26092 -6.28674 0.15731 0.23050 1.35168 1.37256 1.49174 2.37652 2.60045 2.72473 3.05096 3.09108 3.33613 3.46613 3.84182 4.01446 4.08346 4.13484 4.20662 4.34113 4.37184 4.44300 4.50333 4.56063 4.76042 4.84597 4.86010 4.92312 4.94187 5.04028 5.09204 5.10624 5.17620 5.29250 5.36298 5.37841 5.40306 5.45077 5.54245 5.68925 5.72134 5.92848 6.07261 6.32933 6.35969 6.78746 7.34826 8.90846 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019007 B = 0.004578 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.791066 B = 6114.510436 C = 6798.506342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.070 4.070 3 H 0.044 0.956 4 C -0.004 4.004 5 C -0.519 4.519 6 H 0.032 0.968 7 C 0.001 3.999 8 N -0.954 5.954 9 Si 0.948 3.052 10 H -0.269 1.269 11 H -0.285 1.285 12 H -0.245 1.245 13 C 0.083 3.917 14 N -0.640 5.640 15 C 0.054 3.946 16 C -0.121 4.121 17 C -0.088 4.088 18 C -0.131 4.131 19 C -0.089 4.089 20 C -0.163 4.163 21 C 0.085 3.915 22 F -0.146 7.146 23 C -0.142 4.142 24 C -0.143 4.143 25 H 0.063 0.937 26 H 0.045 0.955 27 H 0.026 0.974 28 H 0.020 0.980 29 H 0.012 0.988 30 H 0.264 0.736 31 H 0.074 0.926 32 H 0.023 0.977 33 H 0.339 0.661 34 H 0.136 0.864 35 H 0.153 0.847 36 H 0.161 0.839 37 H 0.150 0.850 38 H 0.108 0.892 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.717 -7.064 -24.019 26.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.089 4.089 3 H 0.062 0.938 4 C -0.042 4.042 5 C -0.557 4.557 6 H 0.051 0.949 7 C -0.195 4.195 8 N -0.596 5.596 9 Si 0.771 3.229 10 H -0.194 1.194 11 H -0.211 1.211 12 H -0.168 1.168 13 C -0.046 4.046 14 N -0.268 5.268 15 C -0.038 4.038 16 C -0.124 4.124 17 C -0.107 4.107 18 C -0.149 4.149 19 C -0.107 4.107 20 C -0.181 4.181 21 C 0.065 3.935 22 F -0.125 7.125 23 C -0.180 4.180 24 C -0.180 4.180 25 H 0.082 0.918 26 H 0.065 0.935 27 H 0.045 0.955 28 H 0.039 0.961 29 H 0.030 0.970 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.041 0.959 33 H 0.157 0.843 34 H 0.154 0.846 35 H 0.171 0.829 36 H 0.179 0.821 37 H 0.167 0.833 38 H 0.127 0.873 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.011 -7.237 -23.840 25.882 hybrid contribution 1.035 0.340 0.819 1.363 sum 8.046 -6.898 -23.022 25.344 Atomic orbital electron populations 1.21477 0.94882 1.00750 0.99999 1.20878 0.96606 0.98242 0.93131 0.93776 1.19537 0.95549 0.95957 0.93118 1.21438 1.34404 1.08583 0.91289 0.94920 1.26005 0.97027 1.00978 0.95461 1.70082 1.49124 1.41626 0.98724 0.85693 0.79107 0.79935 0.78134 1.19373 1.21088 1.16826 1.21826 0.96928 0.97455 0.88378 1.60473 1.61736 1.04959 0.99647 1.19992 0.86554 1.04388 0.92833 1.19855 0.95779 0.95242 1.01521 1.21171 0.95470 0.96308 0.97727 1.21583 0.93673 1.00679 0.98951 1.21411 1.01549 0.91888 0.95888 1.21447 0.92240 1.00899 1.03544 1.17881 0.91825 0.83642 1.00116 1.91468 1.83227 1.49487 1.88307 1.23131 1.00564 0.92173 1.02091 1.23061 1.00981 0.99981 0.93981 0.91781 0.93541 0.95481 0.96141 0.96958 0.92676 0.90775 0.95864 0.84269 0.84638 0.82924 0.82122 0.83271 0.87339 0.88122 0.88045 0.88430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.41 8.89 71.98 0.64 -3.77 16 2 C -0.07 -2.77 2.52 -10.79 -0.03 -2.79 16 3 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 4 C 0.00 -0.18 3.52 29.85 0.10 -0.07 16 5 C -0.52 -30.31 8.96 25.60 0.23 -30.08 16 6 H 0.03 2.11 7.30 -2.91 -0.02 2.09 16 7 C 0.00 0.08 5.47 84.65 0.46 0.54 16 8 N -0.95 -60.91 13.96 21.45 0.30 -60.61 16 9 Si 0.95 44.73 27.47 68.60 1.88 46.61 16 10 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 12 H -0.24 -10.64 6.54 99.48 0.65 -9.99 16 13 C 0.08 2.63 4.71 86.30 0.41 3.04 16 14 N -0.64 -18.01 6.03 -473.88 -2.86 -20.87 16 15 C 0.05 1.28 1.48 2.78 0.00 1.29 16 16 C -0.12 -2.77 4.66 -19.82 -0.09 -2.87 16 17 C -0.09 -1.77 8.88 22.26 0.20 -1.57 16 18 C -0.13 -2.12 10.05 22.27 0.22 -1.90 16 19 C -0.09 -1.34 10.04 22.26 0.22 -1.12 16 20 C -0.16 -2.99 10.03 22.31 0.22 -2.76 16 21 C 0.08 1.97 7.17 22.38 0.16 2.13 16 22 F -0.15 -3.73 16.42 44.97 0.74 -3.00 16 23 C -0.14 -2.86 9.87 30.62 0.30 -2.56 16 24 C -0.14 -2.97 9.66 30.62 0.30 -2.68 16 25 H 0.06 2.21 7.75 -2.38 -0.02 2.19 16 26 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.03 1.19 6.95 -2.39 -0.02 1.17 16 28 H 0.02 0.95 7.20 -2.39 -0.02 0.93 16 29 H 0.01 0.56 7.57 -2.39 -0.02 0.55 16 30 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 31 H 0.07 2.27 8.07 -2.39 -0.02 2.25 16 32 H 0.02 0.75 7.36 -2.39 -0.02 0.73 16 33 H 0.34 9.96 8.87 -89.70 -0.80 9.17 16 34 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 35 H 0.15 1.70 8.06 -2.91 -0.02 1.67 16 36 H 0.16 1.40 8.06 -2.91 -0.02 1.37 16 37 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 38 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -67.39 341.00 3.58 -63.81 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: 0.16 Total: 19.22 kcal Atomic # 6 Polarization: -48.53 SS G_CDS: 3.36 Total: -45.17 kcal Atomic # 7 Polarization: -78.92 SS G_CDS: -2.56 Total: -81.47 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.74 Total: -3.00 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.88 Total: 46.61 kcal Total: -67.39 3.58 -63.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602559342.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.816 kcal (2) G-P(sol) polarization free energy of solvation -67.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds