Wall clock time and date at job start Mon Mar 30 2020 02:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47102 * 2 1 4 4 C 1.52997 * 109.47237 * 240.00075 * 2 1 3 5 5 C 1.50696 * 109.47444 * 64.99485 * 4 2 1 6 6 H 1.08003 * 119.99658 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00282 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99888 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00175 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.46865 * 89.99821 * 9 7 5 11 11 H 1.48494 * 109.47374 * 209.99815 * 9 7 5 12 12 H 1.48500 * 109.46788 * 330.00415 * 9 7 5 13 13 C 1.53000 * 109.47426 * 119.99947 * 2 1 3 14 14 N 1.46900 * 109.47047 * 295.00236 * 13 2 1 15 15 C 1.46901 * 111.00245 * 180.02562 * 14 13 2 16 16 C 1.50700 * 109.47189 * 179.97438 * 15 14 13 17 17 C 1.38623 * 120.32225 * 89.99987 * 16 15 14 18 18 C 1.38595 * 118.48634 * 180.02562 * 17 16 15 19 19 C 1.39308 * 119.05699 * 359.97438 * 18 17 16 20 20 C 1.48172 * 119.71823 * 180.02562 * 19 18 17 21 21 N 1.34774 * 119.99607 * 180.02562 * 20 19 18 22 22 O 1.21513 * 120.00154 * 359.97438 * 20 19 18 23 23 N 1.32718 * 120.55490 * 359.97438 * 19 18 17 24 24 C 1.31515 * 121.64170 * 0.04236 * 23 19 18 25 25 H 1.08991 * 109.47146 * 60.00134 * 1 2 3 26 26 H 1.09004 * 109.46771 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47074 * 299.99763 * 1 2 3 28 28 H 1.09002 * 109.47631 * 185.00377 * 4 2 1 29 29 H 1.09006 * 109.47143 * 304.99766 * 4 2 1 30 30 H 0.97001 * 120.00246 * 180.02562 * 8 7 5 31 31 H 1.08998 * 109.47226 * 174.99906 * 13 2 1 32 32 H 1.08998 * 109.47014 * 54.99984 * 13 2 1 33 33 H 1.00900 * 111.00137 * 56.04677 * 14 13 2 34 34 H 1.09003 * 109.47193 * 59.99524 * 15 14 13 35 35 H 1.09006 * 109.46898 * 299.99712 * 15 14 13 36 36 H 1.07998 * 120.76123 * 359.97438 * 17 16 15 37 37 H 1.08000 * 120.46738 * 179.72634 * 18 17 16 38 38 H 0.97004 * 120.00166 * 359.97438 * 21 20 19 39 39 H 0.97002 * 119.99987 * 179.97438 * 21 20 19 40 40 H 1.08001 * 119.54659 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0570 -2.4766 6 1 1.0805 0.9745 -2.3757 7 6 1.9923 -0.4023 -3.7283 8 7 1.6447 0.2771 -4.7993 9 14 2.9616 -1.9896 -3.9029 10 1 2.0215 -3.1333 -4.0195 11 1 3.8100 -1.9203 -5.1197 12 1 3.8235 -2.1772 -2.7083 13 6 2.0401 -0.7212 1.2492 14 7 1.6514 0.0374 2.4456 15 6 2.1259 -0.6264 3.6672 16 6 1.7098 0.1794 4.8708 17 6 0.4942 -0.0651 5.4906 18 6 0.1495 0.6989 6.5943 19 6 1.0321 1.6801 7.0403 20 6 0.6786 2.5051 8.2193 21 7 1.5280 3.4563 8.6552 22 8 -0.3775 2.3245 8.7926 23 7 2.1872 1.8816 6.4186 24 6 2.5389 1.1714 5.3691 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.1263 -0.7995 -1.2056 29 1 1.6054 -1.7198 -1.2951 30 1 1.8913 -0.0462 -5.6800 31 1 3.1264 -0.7994 1.2055 32 1 1.6055 -1.7198 1.2951 33 1 0.6529 0.1792 2.4753 34 1 3.2128 -0.7036 3.6400 35 1 1.6922 -1.6245 3.7301 36 1 -0.1695 -0.8329 5.1213 37 1 -0.7917 0.5384 7.0990 38 1 2.3709 3.6006 8.1974 39 1 1.2965 3.9966 9.4269 40 1 3.4869 1.3642 4.8889 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602569309.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:13 Heat of formation + Delta-G solvation = -20.359574 kcal Electronic energy + Delta-G solvation = -20200.556318 eV Core-core repulsion = 17014.347870 eV Total energy + Delta-G solvation = -3186.208448 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.93020 -39.15522 -37.23523 -34.79829 -34.00256 -32.67514 -32.22235 -31.20347 -27.81575 -26.78885 -25.02785 -23.98911 -22.95781 -21.85859 -21.10364 -19.11032 -18.55698 -17.58062 -16.93370 -16.43338 -16.08329 -15.44624 -15.27551 -14.98532 -14.91487 -14.19292 -14.07893 -13.63278 -13.52248 -13.49591 -13.29165 -12.77930 -12.20669 -12.07294 -11.78798 -11.64802 -11.07292 -10.78493 -10.74553 -10.49151 -10.24283 -10.05602 -9.93523 -9.86217 -9.76230 -9.56898 -9.32108 -9.09096 -8.53962 -8.38653 -6.03857 -4.01146 0.29479 0.90219 2.40047 3.04834 3.29231 3.37178 3.39914 3.52421 3.88890 4.26137 4.44656 4.47464 4.54492 4.62540 4.64834 4.91090 5.23155 5.29434 5.42669 5.44153 5.56869 5.60123 5.65192 5.86178 5.89237 6.06177 6.23326 6.29601 6.38758 6.39293 6.68212 6.90677 6.92130 7.00459 7.08747 7.27401 7.36816 7.42655 7.47546 7.80150 7.88065 8.55013 9.01708 9.58740 11.09542 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.041688 B = 0.002584 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.496181 B =10834.909767 C =10926.894098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.076 4.076 3 H 0.072 0.928 4 C -0.008 4.008 5 C -0.514 4.514 6 H 0.074 0.926 7 C 0.065 3.935 8 N -0.904 5.904 9 Si 0.879 3.121 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.061 3.939 14 N -0.684 5.684 15 C 0.095 3.905 16 C -0.100 4.100 17 C -0.079 4.079 18 C -0.108 4.108 19 C 0.064 3.936 20 C 0.580 3.420 21 N -0.836 5.836 22 O -0.540 6.540 23 N -0.459 5.459 24 C 0.119 3.881 25 H 0.069 0.931 26 H 0.040 0.960 27 H 0.033 0.967 28 H 0.015 0.985 29 H 0.009 0.991 30 H 0.262 0.738 31 H 0.070 0.930 32 H 0.026 0.974 33 H 0.342 0.658 34 H 0.087 0.913 35 H 0.042 0.958 36 H 0.141 0.859 37 H 0.147 0.853 38 H 0.413 0.587 39 H 0.404 0.596 40 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.344 0.184 24.866 24.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.094 4.094 3 H 0.091 0.909 4 C -0.046 4.046 5 C -0.552 4.552 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.544 5.544 9 Si 0.706 3.294 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.067 4.067 14 N -0.316 5.316 15 C -0.035 4.035 16 C -0.102 4.102 17 C -0.105 4.105 18 C -0.129 4.129 19 C -0.074 4.074 20 C 0.363 3.637 21 N -0.399 5.399 22 O -0.416 6.416 23 N -0.170 5.170 24 C -0.041 4.041 25 H 0.088 0.912 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.034 0.966 29 H 0.028 0.972 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.044 0.956 33 H 0.161 0.839 34 H 0.105 0.895 35 H 0.060 0.940 36 H 0.159 0.841 37 H 0.165 0.835 38 H 0.243 0.757 39 H 0.235 0.765 40 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 1.728 1.021 25.222 25.301 hybrid contribution -0.331 -1.955 -0.541 2.055 sum 1.397 -0.934 24.681 24.738 Atomic orbital electron populations 1.21760 0.96219 1.00523 1.00886 1.21036 0.95233 1.00272 0.92904 0.90921 1.19601 0.95956 0.95676 0.93375 1.21124 1.35389 1.09584 0.89076 0.90824 1.25037 0.95657 0.96964 0.95968 1.69914 1.47158 1.39279 0.98018 0.86798 0.80626 0.84287 0.77658 1.20455 1.21468 1.19074 1.22213 1.00535 0.94506 0.89429 1.60615 1.20081 1.50230 1.00679 1.20895 1.01524 0.93981 0.87075 1.21158 0.94869 0.97240 0.96974 1.21589 0.95857 0.98748 0.94310 1.22084 1.00484 0.94204 0.96095 1.21001 0.92294 0.97188 0.96915 1.17897 0.83387 0.79749 0.82624 1.43640 1.23501 1.37878 1.34868 1.90830 1.23926 1.69151 1.57679 1.67530 1.15872 1.25452 1.08196 1.22708 0.99772 0.90486 0.91128 0.91239 0.94042 0.94780 0.96636 0.97243 0.92805 0.91173 0.95566 0.83933 0.89469 0.93954 0.84096 0.83475 0.75709 0.76484 0.81627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 8.77 37.16 0.33 -2.06 16 2 C -0.08 -1.40 2.54 -90.62 -0.23 -1.64 16 3 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 4 C -0.01 -0.19 3.52 -27.89 -0.10 -0.29 16 5 C -0.51 -14.23 8.96 -34.44 -0.31 -14.53 16 6 H 0.07 2.20 7.30 -52.48 -0.38 1.81 16 7 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 8 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 9 Si 0.88 21.44 27.47 -169.99 -4.67 16.77 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 13 C 0.06 0.90 5.14 -3.82 -0.02 0.88 16 14 N -0.68 -8.41 6.49 -115.05 -0.75 -9.15 16 15 C 0.09 0.90 5.83 -4.98 -0.03 0.87 16 16 C -0.10 -0.92 5.42 -104.36 -0.57 -1.49 16 17 C -0.08 -0.68 9.85 -39.31 -0.39 -1.07 16 18 C -0.11 -1.04 9.63 -39.05 -0.38 -1.42 16 19 C 0.06 0.68 6.75 -83.01 -0.56 0.12 16 20 C 0.58 6.19 8.08 -12.18 -0.10 6.09 16 21 N -0.84 -5.88 8.86 30.60 0.27 -5.61 16 22 O -0.54 -7.34 17.16 5.35 0.09 -7.25 16 23 N -0.46 -4.64 9.54 -9.80 -0.09 -4.73 16 24 C 0.12 1.13 10.86 -17.57 -0.19 0.94 16 25 H 0.07 1.39 6.95 -51.93 -0.36 1.03 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.03 0.50 6.68 -51.93 -0.35 0.15 16 28 H 0.02 0.36 7.20 -51.93 -0.37 -0.02 16 29 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 30 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.34 4.11 6.98 -39.29 -0.27 3.84 16 34 H 0.09 0.77 8.09 -51.93 -0.42 0.35 16 35 H 0.04 0.37 8.09 -51.93 -0.42 -0.05 16 36 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.15 1.32 7.64 -52.49 -0.40 0.92 16 38 H 0.41 2.37 8.16 -40.82 -0.33 2.04 16 39 H 0.40 2.07 8.93 -40.82 -0.36 1.71 16 40 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 335.65 15.07 5.06 5.06 Total: -1.00 -32.61 335.65 -7.72 -40.34 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -5.77 Total: 3.31 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: -2.64 Total: -11.84 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: 0.20 Total: -46.38 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: 0.09 Total: -7.25 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.61 -7.72 -40.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602569309.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.979 kcal (2) G-P(sol) polarization free energy of solvation -32.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds