Wall clock time and date at job start Mon Mar 30 2020 02:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47102 * 2 1 4 4 C 1.52997 * 109.47237 * 240.00075 * 2 1 3 5 5 C 1.50696 * 109.47444 * 64.99485 * 4 2 1 6 6 H 1.08003 * 119.99658 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00282 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99888 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00175 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.46865 * 89.99821 * 9 7 5 11 11 H 1.48494 * 109.47374 * 209.99815 * 9 7 5 12 12 H 1.48500 * 109.46788 * 330.00415 * 9 7 5 13 13 C 1.53000 * 109.47426 * 119.99947 * 2 1 3 14 14 N 1.46900 * 109.47047 * 295.00236 * 13 2 1 15 15 C 1.46901 * 111.00245 * 180.02562 * 14 13 2 16 16 C 1.50700 * 109.47189 * 179.97438 * 15 14 13 17 17 C 1.38623 * 120.32225 * 89.99987 * 16 15 14 18 18 C 1.38595 * 118.48634 * 180.02562 * 17 16 15 19 19 C 1.39308 * 119.05699 * 359.97438 * 18 17 16 20 20 C 1.48172 * 119.71823 * 180.02562 * 19 18 17 21 21 N 1.34774 * 119.99607 * 180.02562 * 20 19 18 22 22 O 1.21513 * 120.00154 * 359.97438 * 20 19 18 23 23 N 1.32718 * 120.55490 * 359.97438 * 19 18 17 24 24 C 1.31515 * 121.64170 * 0.04236 * 23 19 18 25 25 H 1.08991 * 109.47146 * 60.00134 * 1 2 3 26 26 H 1.09004 * 109.46771 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47074 * 299.99763 * 1 2 3 28 28 H 1.09002 * 109.47631 * 185.00377 * 4 2 1 29 29 H 1.09006 * 109.47143 * 304.99766 * 4 2 1 30 30 H 0.97001 * 120.00246 * 180.02562 * 8 7 5 31 31 H 1.08998 * 109.47226 * 174.99906 * 13 2 1 32 32 H 1.08998 * 109.47014 * 54.99984 * 13 2 1 33 33 H 1.00900 * 111.00137 * 56.04677 * 14 13 2 34 34 H 1.09003 * 109.47193 * 59.99524 * 15 14 13 35 35 H 1.09006 * 109.46898 * 299.99712 * 15 14 13 36 36 H 1.07998 * 120.76123 * 359.97438 * 17 16 15 37 37 H 1.08000 * 120.46738 * 179.72634 * 18 17 16 38 38 H 0.97004 * 120.00166 * 359.97438 * 21 20 19 39 39 H 0.97002 * 119.99987 * 179.97438 * 21 20 19 40 40 H 1.08001 * 119.54659 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0570 -2.4766 6 1 1.0805 0.9745 -2.3757 7 6 1.9923 -0.4023 -3.7283 8 7 1.6447 0.2771 -4.7993 9 14 2.9616 -1.9896 -3.9029 10 1 2.0215 -3.1333 -4.0195 11 1 3.8100 -1.9203 -5.1197 12 1 3.8235 -2.1772 -2.7083 13 6 2.0401 -0.7212 1.2492 14 7 1.6514 0.0374 2.4456 15 6 2.1259 -0.6264 3.6672 16 6 1.7098 0.1794 4.8708 17 6 0.4942 -0.0651 5.4906 18 6 0.1495 0.6989 6.5943 19 6 1.0321 1.6801 7.0403 20 6 0.6786 2.5051 8.2193 21 7 1.5280 3.4563 8.6552 22 8 -0.3775 2.3245 8.7926 23 7 2.1872 1.8816 6.4186 24 6 2.5389 1.1714 5.3691 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.1263 -0.7995 -1.2056 29 1 1.6054 -1.7198 -1.2951 30 1 1.8913 -0.0462 -5.6800 31 1 3.1264 -0.7994 1.2055 32 1 1.6055 -1.7198 1.2951 33 1 0.6529 0.1792 2.4753 34 1 3.2128 -0.7036 3.6400 35 1 1.6922 -1.6245 3.7301 36 1 -0.1695 -0.8329 5.1213 37 1 -0.7917 0.5384 7.0990 38 1 2.3709 3.6006 8.1974 39 1 1.2965 3.9966 9.4269 40 1 3.4869 1.3642 4.8889 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602569309.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:12 Heat of formation + Delta-G solvation = -45.751208 kcal Electronic energy + Delta-G solvation = -20201.657382 eV Core-core repulsion = 17014.347870 eV Total energy + Delta-G solvation = -3187.309512 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.66208 -39.95625 -38.43257 -36.02310 -34.87605 -34.23650 -33.19673 -32.27416 -29.49203 -27.86388 -26.26239 -24.75478 -24.04017 -23.22402 -21.84054 -20.63420 -19.26881 -18.94965 -18.30159 -17.14269 -17.11382 -16.49470 -16.20199 -16.00934 -15.88069 -15.67283 -15.16083 -14.86765 -14.65738 -14.32642 -14.30297 -14.12238 -13.68741 -13.42096 -13.20911 -12.80377 -12.52024 -12.48991 -12.06416 -11.70134 -11.59348 -11.44244 -11.22283 -11.04252 -10.90634 -10.77809 -10.71677 -10.62548 -10.10949 -9.30826 -8.23897 -6.26338 -0.44871 0.21681 1.37929 1.40136 1.51684 1.62648 2.35786 2.39838 2.76887 3.11623 3.20154 3.39587 3.77006 3.84567 3.94455 3.97535 4.16208 4.24390 4.28450 4.43936 4.57614 4.75865 4.79691 4.82762 4.86921 4.98128 5.04599 5.08336 5.17822 5.32266 5.41001 5.55305 5.58512 5.72498 5.76416 5.77633 6.09035 6.24881 6.36904 6.46675 6.72560 6.82058 7.19572 7.37267 8.92978 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.041688 B = 0.002584 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.496181 B =10834.909767 C =10926.894098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.072 4.072 3 H 0.051 0.949 4 C -0.007 4.007 5 C -0.518 4.518 6 H 0.032 0.968 7 C -0.002 4.002 8 N -0.956 5.956 9 Si 0.950 3.050 10 H -0.269 1.269 11 H -0.289 1.289 12 H -0.243 1.243 13 C 0.076 3.924 14 N -0.691 5.691 15 C 0.099 3.901 16 C -0.100 4.100 17 C -0.073 4.073 18 C -0.116 4.116 19 C 0.048 3.952 20 C 0.575 3.425 21 N -0.817 5.817 22 O -0.577 6.577 23 N -0.465 5.465 24 C 0.112 3.888 25 H 0.030 0.970 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.019 0.981 29 H 0.018 0.982 30 H 0.264 0.736 31 H 0.073 0.927 32 H 0.039 0.961 33 H 0.343 0.657 34 H 0.097 0.903 35 H 0.058 0.942 36 H 0.164 0.836 37 H 0.149 0.851 38 H 0.421 0.579 39 H 0.414 0.586 40 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.434 -1.700 26.463 26.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.091 4.091 3 H 0.070 0.930 4 C -0.045 4.045 5 C -0.556 4.556 6 H 0.050 0.950 7 C -0.198 4.198 8 N -0.598 5.598 9 Si 0.773 3.227 10 H -0.194 1.194 11 H -0.215 1.215 12 H -0.166 1.166 13 C -0.053 4.053 14 N -0.323 5.323 15 C -0.030 4.030 16 C -0.103 4.103 17 C -0.099 4.099 18 C -0.137 4.137 19 C -0.089 4.089 20 C 0.359 3.641 21 N -0.380 5.380 22 O -0.457 6.457 23 N -0.176 5.176 24 C -0.049 4.049 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.037 0.963 29 H 0.036 0.964 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.057 0.943 33 H 0.163 0.837 34 H 0.115 0.885 35 H 0.076 0.924 36 H 0.181 0.819 37 H 0.167 0.833 38 H 0.252 0.748 39 H 0.247 0.753 40 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 2.847 -0.836 26.858 27.022 hybrid contribution -0.695 -1.247 -1.018 1.754 sum 2.152 -2.083 25.841 26.014 Atomic orbital electron populations 1.21674 0.95588 1.01022 1.00495 1.20895 0.95777 0.99093 0.93363 0.93038 1.19566 0.96148 0.95639 0.93115 1.21484 1.34192 1.08596 0.91363 0.94956 1.26048 0.97099 1.01110 0.95550 1.70084 1.49243 1.41716 0.98722 0.85662 0.79315 0.79347 0.78328 1.19379 1.21491 1.16609 1.21911 1.00577 0.94467 0.88355 1.60514 1.20338 1.50517 1.00950 1.20912 1.02166 0.94339 0.85543 1.21167 0.95001 0.97159 0.96963 1.21837 0.95901 0.98673 0.93537 1.22219 1.00579 0.94322 0.96592 1.21102 0.92857 0.97751 0.97219 1.18050 0.83249 0.80194 0.82651 1.43529 1.23087 1.36668 1.34720 1.90805 1.25490 1.70452 1.58918 1.67527 1.15730 1.25820 1.08566 1.23041 1.00470 0.90404 0.90951 0.95040 0.93012 0.91782 0.96294 0.96366 0.92768 0.90850 0.94331 0.83730 0.88520 0.92394 0.81869 0.83280 0.74758 0.75315 0.80196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.42 8.77 71.98 0.63 -3.79 16 2 C -0.07 -2.59 2.54 -10.79 -0.03 -2.62 16 3 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 4 C -0.01 -0.30 3.52 29.85 0.10 -0.20 16 5 C -0.52 -29.28 8.96 25.60 0.23 -29.05 16 6 H 0.03 2.03 7.30 -2.91 -0.02 2.01 16 7 C 0.00 -0.13 5.47 84.65 0.46 0.33 16 8 N -0.96 -60.17 13.96 21.45 0.30 -59.87 16 9 Si 0.95 43.65 27.47 68.60 1.88 45.54 16 10 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 11 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 12 H -0.24 -10.16 6.54 99.48 0.65 -9.51 16 13 C 0.08 1.98 5.14 86.30 0.44 2.42 16 14 N -0.69 -14.73 6.49 -517.92 -3.36 -18.09 16 15 C 0.10 1.51 5.83 85.56 0.50 2.01 16 16 C -0.10 -1.56 5.42 -19.70 -0.11 -1.67 16 17 C -0.07 -1.08 9.85 22.45 0.22 -0.86 16 18 C -0.12 -2.10 9.63 22.61 0.22 -1.88 16 19 C 0.05 0.97 6.75 41.91 0.28 1.25 16 20 C 0.57 11.97 8.08 86.88 0.70 12.68 16 21 N -0.82 -10.70 8.86 -175.38 -1.55 -12.26 16 22 O -0.58 -15.74 17.16 -3.76 -0.06 -15.80 16 23 N -0.47 -8.68 9.54 -184.92 -1.76 -10.44 16 24 C 0.11 1.86 10.86 84.82 0.92 2.78 16 25 H 0.03 1.28 6.95 -2.39 -0.02 1.26 16 26 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.06 1.76 6.68 -2.39 -0.02 1.74 16 28 H 0.02 0.83 7.20 -2.39 -0.02 0.81 16 29 H 0.02 0.78 7.57 -2.38 -0.02 0.76 16 30 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 31 H 0.07 1.89 8.14 -2.39 -0.02 1.88 16 32 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.34 7.12 6.98 -89.69 -0.63 6.49 16 34 H 0.10 1.33 8.09 -2.39 -0.02 1.31 16 35 H 0.06 0.75 8.09 -2.38 -0.02 0.73 16 36 H 0.16 1.62 8.06 -2.91 -0.02 1.59 16 37 H 0.15 2.57 7.64 -2.91 -0.02 2.55 16 38 H 0.42 4.30 8.16 -92.71 -0.76 3.54 16 39 H 0.41 3.83 8.93 -92.71 -0.83 3.00 16 40 H 0.18 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -72.19 335.65 -1.17 -73.36 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -1.19 Total: 16.16 kcal Atomic # 6 Polarization: -23.17 SS G_CDS: 4.58 Total: -18.59 kcal Atomic # 7 Polarization: -94.28 SS G_CDS: -6.38 Total: -100.66 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.06 Total: -15.80 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.88 Total: 45.54 kcal Total: -72.19 -1.17 -73.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602569309.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.609 kcal (2) G-P(sol) polarization free energy of solvation -72.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds