Wall clock time and date at job start Mon Mar 30 2020 02:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 C 1.50697 * 109.47463 * 295.00146 * 4 2 1 6 6 H 1.08007 * 119.99713 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00558 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99931 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99729 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47193 * 89.99912 * 9 7 5 11 11 H 1.48494 * 109.47218 * 209.99865 * 9 7 5 12 12 H 1.48504 * 109.47120 * 330.00170 * 9 7 5 13 13 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 14 14 N 1.46900 * 109.47303 * 64.99966 * 13 2 1 15 15 C 1.46891 * 110.99776 * 180.02562 * 14 13 2 16 16 H 1.08996 * 109.47878 * 34.99534 * 15 14 13 17 17 C 1.50710 * 109.46997 * 274.99428 * 15 14 13 18 18 N 1.34776 * 119.99976 * 180.02562 * 17 15 14 19 19 O 1.21273 * 119.99764 * 0.02562 * 17 15 14 20 20 C 1.50706 * 109.47097 * 155.00120 * 15 14 13 21 21 C 1.38229 * 119.61464 * 204.72681 * 20 15 14 22 22 C 1.38634 * 119.15498 * 179.74949 * 21 20 15 23 23 C 1.38667 * 118.42116 * 0.50866 * 22 21 20 24 24 C 1.38179 * 119.16511 * 359.73238 * 23 22 21 25 25 N 1.31850 * 119.62014 * 24.99125 * 20 15 14 26 26 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 29 29 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 30 30 H 1.09006 * 109.47717 * 174.99599 * 4 2 1 31 31 H 0.97002 * 119.99493 * 180.02562 * 8 7 5 32 32 H 1.09007 * 109.47135 * 184.99942 * 13 2 1 33 33 H 1.08996 * 109.46945 * 304.99450 * 13 2 1 34 34 H 1.00900 * 110.99738 * 56.04447 * 14 13 2 35 35 H 0.97003 * 119.99991 * 0.02562 * 18 17 15 36 36 H 0.97001 * 119.99918 * 180.02562 * 18 17 15 37 37 H 1.07997 * 120.42382 * 359.97378 * 21 20 15 38 38 H 1.08001 * 120.78665 * 180.25658 * 22 21 20 39 39 H 1.07999 * 120.41901 * 179.70648 * 23 22 21 40 40 H 1.08000 * 119.61937 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 1.6414 0.0569 2.4765 6 1 1.0800 0.9741 2.3757 7 6 1.9925 -0.4024 3.7283 8 7 1.6441 0.2766 4.7994 9 14 2.9617 -1.9897 3.9028 10 1 4.4154 -1.6873 3.8786 11 1 2.6135 -2.6434 5.1898 12 1 2.6268 -2.9003 2.7785 13 6 2.0400 -0.7212 -1.2494 14 7 1.6514 0.0376 -2.4457 15 6 2.1248 -0.6269 -3.6672 16 1 2.0808 -1.7077 -3.5333 17 6 3.5468 -0.2126 -3.9456 18 7 4.1921 -0.7004 -5.0236 19 8 4.1104 0.5597 -3.1996 20 6 1.2493 -0.2284 -4.8274 21 6 1.1468 -1.0634 -5.9242 22 6 0.3347 -0.6899 -6.9838 23 6 -0.3386 0.5198 -6.9049 24 6 -0.1833 1.3046 -5.7783 25 7 0.5940 0.9150 -4.7867 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.6055 -1.7198 1.2950 30 1 3.1264 -0.7995 1.2055 31 1 1.8915 -0.0464 5.6800 32 1 3.1264 -0.7994 -1.2057 33 1 1.6055 -1.7197 -1.2953 34 1 1.9882 0.9874 -2.3966 35 1 3.7411 -1.3179 -5.6205 36 1 5.1075 -0.4340 -5.2026 37 1 1.6897 -1.9966 -5.9537 38 1 0.2321 -1.3241 -7.8520 39 1 -0.9761 0.8446 -7.7139 40 1 -0.7046 2.2479 -5.7089 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602672859.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:49 Heat of formation + Delta-G solvation = -10.677213 kcal Electronic energy + Delta-G solvation = -21227.039252 eV Core-core repulsion = 18041.250663 eV Total energy + Delta-G solvation = -3185.788589 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.82669 -39.43632 -36.59697 -34.43172 -33.87337 -32.63311 -32.16578 -31.07413 -27.84381 -26.76206 -24.66508 -23.65737 -22.94775 -21.91485 -20.53881 -19.11967 -17.93080 -17.28824 -17.04491 -16.61699 -16.27523 -16.00432 -14.91116 -14.79041 -14.34717 -14.09375 -13.96775 -13.66339 -13.65460 -13.33272 -12.70205 -12.48770 -12.21650 -11.86044 -11.67385 -11.56118 -10.86968 -10.68398 -10.51105 -10.30017 -10.11522 -9.93123 -9.83176 -9.58763 -9.55210 -9.35366 -9.17759 -8.95604 -8.42726 -8.20831 -5.93247 -3.89255 0.78483 1.04037 2.39934 3.23675 3.38104 3.44637 3.48815 3.60800 4.02652 4.14817 4.52622 4.54827 4.58143 4.76157 4.81077 4.91119 5.03229 5.26180 5.39885 5.40575 5.67004 5.77579 5.86252 5.90547 6.15899 6.34577 6.39376 6.50972 6.55658 6.71847 6.90085 7.00970 7.15379 7.22234 7.29268 7.41921 7.58862 7.67119 7.85768 7.92371 8.02074 8.67611 9.13458 9.69955 11.20388 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026144 B = 0.003826 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.738395 B = 7315.937231 C = 7880.402321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.071 4.071 3 H 0.062 0.938 4 C -0.009 4.009 5 C -0.509 4.509 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.907 5.907 9 Si 0.878 3.122 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.057 3.943 14 N -0.642 5.642 15 C 0.115 3.885 16 H 0.119 0.881 17 C 0.495 3.505 18 N -0.855 5.855 19 O -0.525 6.525 20 C 0.148 3.852 21 C -0.176 4.176 22 C -0.073 4.073 23 C -0.178 4.178 24 C 0.105 3.895 25 N -0.448 5.448 26 H 0.058 0.942 27 H 0.037 0.963 28 H 0.046 0.954 29 H 0.015 0.985 30 H 0.008 0.992 31 H 0.261 0.739 32 H 0.031 0.969 33 H 0.065 0.935 34 H 0.360 0.640 35 H 0.398 0.602 36 H 0.399 0.601 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.740 -4.799 -28.798 29.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.090 4.090 3 H 0.081 0.919 4 C -0.047 4.047 5 C -0.547 4.547 6 H 0.092 0.908 7 C -0.137 4.137 8 N -0.546 5.546 9 Si 0.706 3.294 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.191 1.191 13 C -0.072 4.072 14 N -0.274 5.274 15 C -0.001 4.001 16 H 0.136 0.864 17 C 0.276 3.724 18 N -0.420 5.420 19 O -0.399 6.399 20 C 0.008 3.992 21 C -0.197 4.197 22 C -0.099 4.099 23 C -0.198 4.198 24 C -0.053 4.053 25 N -0.156 5.156 26 H 0.077 0.923 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.033 0.967 30 H 0.027 0.973 31 H 0.071 0.929 32 H 0.049 0.951 33 H 0.083 0.917 34 H 0.182 0.818 35 H 0.227 0.773 36 H 0.230 0.770 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.082 -4.010 -27.253 27.568 hybrid contribution 1.548 -1.476 -0.942 2.337 sum 0.465 -5.486 -28.195 28.728 Atomic orbital electron populations 1.21602 0.95269 1.00466 1.00805 1.20958 0.96233 0.99281 0.92521 0.91947 1.19611 0.95420 0.96133 0.93494 1.21152 1.35034 1.09460 0.89068 0.90775 1.25026 0.95765 0.96896 0.95969 1.69921 1.47418 1.39339 0.97948 0.86804 0.80648 0.84629 0.77338 1.20462 1.21553 1.19103 1.22310 0.97782 0.97324 0.89757 1.60688 1.60796 1.06960 0.98951 1.20543 0.87341 1.00965 0.91216 0.86381 1.21728 0.89707 0.80369 0.80565 1.43984 1.18391 1.50877 1.28767 1.90800 1.67979 1.34151 1.47004 1.20781 0.94804 0.90706 0.92869 1.21857 1.01737 1.01195 0.94899 1.21504 0.94360 0.95967 0.98054 1.22188 1.01519 0.95965 1.00151 1.22893 0.94391 0.99324 0.88673 1.67486 1.05555 1.15222 1.27331 0.92274 0.94377 0.93530 0.96686 0.97344 0.92925 0.95089 0.91687 0.81848 0.77337 0.76990 0.84913 0.84766 0.84838 0.82575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.52 8.89 37.16 0.33 -2.19 16 2 C -0.07 -1.51 2.48 -90.62 -0.22 -1.73 16 3 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 4 C -0.01 -0.22 3.52 -27.89 -0.10 -0.32 16 5 C -0.51 -14.97 8.96 -34.44 -0.31 -15.28 16 6 H 0.07 2.34 7.30 -52.48 -0.38 1.96 16 7 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 8 N -0.91 -28.82 13.96 55.43 0.77 -28.04 16 9 Si 0.88 22.54 27.47 -169.99 -4.67 17.87 16 10 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 11 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 12 H -0.27 -6.55 6.54 56.52 0.37 -6.18 16 13 C 0.06 1.00 4.77 -3.82 -0.02 0.98 16 14 N -0.64 -10.10 5.10 -109.18 -0.56 -10.66 16 15 C 0.12 1.41 2.66 -70.01 -0.19 1.22 16 16 H 0.12 1.20 7.77 -51.93 -0.40 0.79 16 17 C 0.49 6.31 7.24 -10.98 -0.08 6.23 16 18 N -0.86 -6.80 8.77 31.22 0.27 -6.52 16 19 O -0.52 -9.21 16.14 5.56 0.09 -9.12 16 20 C 0.15 1.63 5.80 -82.58 -0.48 1.16 16 21 C -0.18 -1.33 8.83 -39.44 -0.35 -1.68 16 22 C -0.07 -0.47 10.18 -39.28 -0.40 -0.87 16 23 C -0.18 -1.28 10.11 -39.44 -0.40 -1.68 16 24 C 0.10 1.01 11.18 -17.55 -0.20 0.81 16 25 N -0.45 -5.66 9.73 -9.47 -0.09 -5.75 16 26 H 0.06 1.32 6.95 -51.93 -0.36 0.96 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.87 7.75 -51.93 -0.40 0.47 16 29 H 0.01 0.37 7.20 -51.93 -0.37 0.00 16 30 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 31 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 32 H 0.03 0.58 7.62 -51.93 -0.40 0.18 16 33 H 0.06 1.08 8.05 -51.93 -0.42 0.66 16 34 H 0.36 6.29 7.75 -39.29 -0.30 5.98 16 35 H 0.40 1.90 7.30 -40.82 -0.30 1.60 16 36 H 0.40 2.82 8.93 -40.82 -0.36 2.45 16 37 H 0.13 0.58 7.55 -52.49 -0.40 0.18 16 38 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 39 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 40 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 332.51 15.07 5.01 5.01 Total: -1.00 -36.29 332.51 -7.45 -43.74 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -5.77 Total: 5.00 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -2.50 Total: -11.52 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: 0.40 Total: -50.98 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.09 Total: -9.12 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.67 Total: 17.87 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -36.29 -7.45 -43.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602672859.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.062 kcal (2) G-P(sol) polarization free energy of solvation -36.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds