Wall clock time and date at job start Mon Mar 30 2020 02:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 C 1.50697 * 109.47463 * 295.00146 * 4 2 1 6 6 H 1.08007 * 119.99713 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00558 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99931 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99729 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47193 * 89.99912 * 9 7 5 11 11 H 1.48494 * 109.47218 * 209.99865 * 9 7 5 12 12 H 1.48504 * 109.47120 * 330.00170 * 9 7 5 13 13 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 14 14 N 1.46900 * 109.47303 * 64.99966 * 13 2 1 15 15 C 1.46891 * 110.99776 * 180.02562 * 14 13 2 16 16 H 1.08996 * 109.47878 * 34.99534 * 15 14 13 17 17 C 1.50710 * 109.46997 * 274.99428 * 15 14 13 18 18 N 1.34776 * 119.99976 * 180.02562 * 17 15 14 19 19 O 1.21273 * 119.99764 * 0.02562 * 17 15 14 20 20 C 1.50706 * 109.47097 * 155.00120 * 15 14 13 21 21 C 1.38229 * 119.61464 * 204.72681 * 20 15 14 22 22 C 1.38634 * 119.15498 * 179.74949 * 21 20 15 23 23 C 1.38667 * 118.42116 * 0.50866 * 22 21 20 24 24 C 1.38179 * 119.16511 * 359.73238 * 23 22 21 25 25 N 1.31850 * 119.62014 * 24.99125 * 20 15 14 26 26 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 29 29 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 30 30 H 1.09006 * 109.47717 * 174.99599 * 4 2 1 31 31 H 0.97002 * 119.99493 * 180.02562 * 8 7 5 32 32 H 1.09007 * 109.47135 * 184.99942 * 13 2 1 33 33 H 1.08996 * 109.46945 * 304.99450 * 13 2 1 34 34 H 1.00900 * 110.99738 * 56.04447 * 14 13 2 35 35 H 0.97003 * 119.99991 * 0.02562 * 18 17 15 36 36 H 0.97001 * 119.99918 * 180.02562 * 18 17 15 37 37 H 1.07997 * 120.42382 * 359.97378 * 21 20 15 38 38 H 1.08001 * 120.78665 * 180.25658 * 22 21 20 39 39 H 1.07999 * 120.41901 * 179.70648 * 23 22 21 40 40 H 1.08000 * 119.61937 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 1.6414 0.0569 2.4765 6 1 1.0800 0.9741 2.3757 7 6 1.9925 -0.4024 3.7283 8 7 1.6441 0.2766 4.7994 9 14 2.9617 -1.9897 3.9028 10 1 4.4154 -1.6873 3.8786 11 1 2.6135 -2.6434 5.1898 12 1 2.6268 -2.9003 2.7785 13 6 2.0400 -0.7212 -1.2494 14 7 1.6514 0.0376 -2.4457 15 6 2.1248 -0.6269 -3.6672 16 1 2.0808 -1.7077 -3.5333 17 6 3.5468 -0.2126 -3.9456 18 7 4.1921 -0.7004 -5.0236 19 8 4.1104 0.5597 -3.1996 20 6 1.2493 -0.2284 -4.8274 21 6 1.1468 -1.0634 -5.9242 22 6 0.3347 -0.6899 -6.9838 23 6 -0.3386 0.5198 -6.9049 24 6 -0.1833 1.3046 -5.7783 25 7 0.5940 0.9150 -4.7867 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.6055 -1.7198 1.2950 30 1 3.1264 -0.7995 1.2055 31 1 1.8915 -0.0464 5.6800 32 1 3.1264 -0.7994 -1.2057 33 1 1.6055 -1.7197 -1.2953 34 1 1.9882 0.9874 -2.3966 35 1 3.7411 -1.3179 -5.6205 36 1 5.1075 -0.4340 -5.2026 37 1 1.6897 -1.9966 -5.9537 38 1 0.2321 -1.3241 -7.8520 39 1 -0.9761 0.8446 -7.7139 40 1 -0.7046 2.2479 -5.7089 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602672859.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:48 Heat of formation + Delta-G solvation = -39.958151 kcal Electronic energy + Delta-G solvation = -21228.308969 eV Core-core repulsion = 18041.250663 eV Total energy + Delta-G solvation = -3187.058306 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.61543 -40.29209 -38.09610 -35.75650 -34.93986 -34.12901 -33.19728 -32.12036 -29.56873 -28.09491 -26.13134 -24.43981 -23.67170 -23.64782 -21.47739 -20.77703 -18.96686 -18.78930 -18.03671 -17.77838 -17.01040 -16.73682 -16.39870 -16.01616 -15.61593 -15.42182 -15.24515 -15.03784 -14.56265 -14.46049 -14.11235 -13.73505 -13.56183 -13.46012 -13.02462 -12.83380 -12.53338 -12.47543 -12.12602 -11.80288 -11.60015 -11.43914 -11.23524 -11.07311 -10.77071 -10.73453 -10.71399 -10.22056 -9.88031 -9.41231 -8.25720 -6.28231 0.16956 0.48476 1.35565 1.37424 1.46271 1.49701 2.38297 2.44805 2.89692 3.09043 3.16028 3.32305 3.84836 3.97888 4.06674 4.13842 4.21633 4.29816 4.33111 4.36141 4.50861 4.69219 4.81519 4.87085 4.89876 4.95010 5.08971 5.24809 5.33512 5.37595 5.40976 5.53696 5.68921 5.72435 5.77035 5.84135 5.97234 6.24728 6.35866 6.37136 6.78700 7.20239 7.22448 7.34811 8.91378 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026144 B = 0.003826 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.738395 B = 7315.937231 C = 7880.402321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.068 4.068 3 H 0.037 0.963 4 C -0.004 4.004 5 C -0.520 4.520 6 H 0.031 0.969 7 C 0.000 4.000 8 N -0.955 5.955 9 Si 0.951 3.049 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.243 1.243 13 C 0.073 3.927 14 N -0.646 5.646 15 C 0.115 3.885 16 H 0.144 0.856 17 C 0.493 3.507 18 N -0.829 5.829 19 O -0.584 6.584 20 C 0.121 3.879 21 C -0.167 4.167 22 C -0.070 4.070 23 C -0.170 4.170 24 C 0.078 3.922 25 N -0.495 5.495 26 H 0.026 0.974 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.025 0.975 30 H 0.009 0.991 31 H 0.265 0.735 32 H 0.020 0.980 33 H 0.085 0.915 34 H 0.345 0.655 35 H 0.417 0.583 36 H 0.407 0.593 37 H 0.169 0.831 38 H 0.172 0.828 39 H 0.162 0.838 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.443 -8.070 -32.253 33.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.087 4.087 3 H 0.056 0.944 4 C -0.042 4.042 5 C -0.558 4.558 6 H 0.050 0.950 7 C -0.196 4.196 8 N -0.596 5.596 9 Si 0.774 3.226 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.167 1.167 13 C -0.056 4.056 14 N -0.276 5.276 15 C 0.000 4.000 16 H 0.161 0.839 17 C 0.276 3.724 18 N -0.394 5.394 19 O -0.463 6.463 20 C -0.018 4.018 21 C -0.187 4.187 22 C -0.096 4.096 23 C -0.190 4.190 24 C -0.079 4.079 25 N -0.204 5.204 26 H 0.045 0.955 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.043 0.957 30 H 0.027 0.973 31 H 0.074 0.926 32 H 0.038 0.962 33 H 0.103 0.897 34 H 0.165 0.835 35 H 0.249 0.751 36 H 0.239 0.761 37 H 0.186 0.814 38 H 0.190 0.810 39 H 0.179 0.821 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -0.796 -7.319 -30.792 31.660 hybrid contribution 1.379 -0.359 0.009 1.425 sum 0.584 -7.678 -30.783 31.731 Atomic orbital electron populations 1.21455 0.94621 1.00897 0.99866 1.20833 0.96691 0.98018 0.93203 0.94442 1.19541 0.95428 0.96127 0.93074 1.21445 1.34411 1.08600 0.91342 0.95034 1.26034 0.97021 1.01160 0.95400 1.70083 1.49117 1.41683 0.98707 0.85651 0.78908 0.79809 0.78229 1.19667 1.20806 1.16672 1.22026 0.96945 0.97676 0.88978 1.60626 1.61085 1.06215 0.99685 1.20679 0.87314 1.01857 0.90164 0.83907 1.21837 0.89946 0.79771 0.80884 1.43723 1.18510 1.49810 1.27324 1.90780 1.69184 1.36998 1.49348 1.20719 0.95833 0.91553 0.93713 1.22189 1.01365 1.01565 0.93556 1.21992 0.93028 0.95851 0.98743 1.22525 1.01042 0.95773 0.99643 1.23148 0.94876 1.00434 0.89405 1.67332 1.07106 1.16676 1.29317 0.95485 0.93119 0.92083 0.95654 0.97253 0.92642 0.96177 0.89684 0.83484 0.75106 0.76144 0.81363 0.81050 0.82081 0.82046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.59 8.89 71.98 0.64 -3.95 16 2 C -0.07 -2.97 2.48 -10.79 -0.03 -2.99 16 3 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 4 C 0.00 -0.19 3.52 29.84 0.10 -0.09 16 5 C -0.52 -31.68 8.96 25.60 0.23 -31.45 16 6 H 0.03 2.12 7.30 -2.91 -0.02 2.10 16 7 C 0.00 -0.02 5.47 84.66 0.46 0.45 16 8 N -0.95 -62.56 13.96 21.45 0.30 -62.26 16 9 Si 0.95 46.33 27.47 68.60 1.88 48.22 16 10 H -0.27 -12.85 7.11 99.48 0.71 -12.15 16 11 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 12 H -0.24 -10.89 6.54 99.48 0.65 -10.23 16 13 C 0.07 2.52 4.77 86.31 0.41 2.93 16 14 N -0.65 -20.25 5.10 -499.34 -2.54 -22.79 16 15 C 0.12 2.63 2.66 43.43 0.12 2.75 16 16 H 0.14 2.43 7.77 -2.39 -0.02 2.41 16 17 C 0.49 12.07 7.24 87.66 0.64 12.70 16 18 N -0.83 -11.13 8.77 -173.53 -1.52 -12.65 16 19 O -0.58 -20.87 16.14 -3.01 -0.05 -20.91 16 20 C 0.12 2.44 5.80 42.56 0.25 2.68 16 21 C -0.17 -1.84 8.83 22.36 0.20 -1.65 16 22 C -0.07 -0.60 10.18 22.47 0.23 -0.37 16 23 C -0.17 -1.92 10.11 22.36 0.23 -1.69 16 24 C 0.08 1.43 11.18 84.67 0.95 2.38 16 25 N -0.50 -12.29 9.73 -183.89 -1.79 -14.08 16 26 H 0.03 1.25 6.95 -2.39 -0.02 1.23 16 27 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.06 2.32 7.75 -2.38 -0.02 2.30 16 29 H 0.03 1.21 7.20 -2.39 -0.02 1.20 16 30 H 0.01 0.46 7.57 -2.38 -0.02 0.44 16 31 H 0.26 16.15 8.31 -92.71 -0.77 15.38 16 32 H 0.02 0.74 7.62 -2.38 -0.02 0.72 16 33 H 0.08 2.60 8.05 -2.39 -0.02 2.59 16 34 H 0.35 12.61 7.75 -89.69 -0.69 11.91 16 35 H 0.42 2.39 7.30 -92.71 -0.68 1.71 16 36 H 0.41 4.86 8.93 -92.71 -0.83 4.03 16 37 H 0.17 0.52 7.55 -2.91 -0.02 0.50 16 38 H 0.17 0.20 8.06 -2.91 -0.02 0.18 16 39 H 0.16 0.83 8.06 -2.91 -0.02 0.81 16 40 H 0.16 2.44 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -83.75 332.51 -0.49 -84.24 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: -1.18 Total: 18.56 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: 4.42 Total: -18.31 kcal Atomic # 7 Polarization: -106.23 SS G_CDS: -5.56 Total: -111.79 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.05 Total: -20.91 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 1.88 Total: 48.22 kcal Total: -83.75 -0.49 -84.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602672859.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.281 kcal (2) G-P(sol) polarization free energy of solvation -83.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds