Wall clock time and date at job start Mon Mar 30 2020 02:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47700 * 2 1 4 4 C 1.53003 * 109.46966 * 240.00043 * 2 1 3 5 5 C 1.50692 * 109.47158 * 65.00249 * 4 2 1 6 6 H 1.08003 * 120.00615 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00095 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00142 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99781 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47085 * 89.99920 * 9 7 5 11 11 H 1.48498 * 109.46998 * 209.99762 * 9 7 5 12 12 H 1.48498 * 109.47117 * 329.99628 * 9 7 5 13 13 C 1.53005 * 109.47065 * 120.00216 * 2 1 3 14 14 N 1.46899 * 109.46895 * 294.99771 * 13 2 1 15 15 C 1.46899 * 111.00048 * 180.02562 * 14 13 2 16 16 H 1.09002 * 109.47142 * 34.99660 * 15 14 13 17 17 C 1.50703 * 109.46899 * 275.00141 * 15 14 13 18 18 N 1.34777 * 119.99834 * 180.02562 * 17 15 14 19 19 O 1.21279 * 120.00100 * 359.97438 * 17 15 14 20 20 C 1.50697 * 109.47369 * 155.00018 * 15 14 13 21 21 C 1.38215 * 119.62025 * 205.02005 * 20 15 14 22 22 C 1.38628 * 119.16579 * 179.97438 * 21 20 15 23 23 C 1.38677 * 118.41857 * 0.02562 * 22 21 20 24 24 C 1.38184 * 119.16194 * 0.02562 * 23 22 21 25 25 N 1.31854 * 119.61642 * 25.00207 * 20 15 14 26 26 H 1.09004 * 109.47028 * 59.99973 * 1 2 3 27 27 H 1.08991 * 109.47415 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47168 * 300.00092 * 1 2 3 29 29 H 1.08999 * 109.46991 * 185.00217 * 4 2 1 30 30 H 1.09001 * 109.46734 * 304.99929 * 4 2 1 31 31 H 0.97000 * 120.00175 * 180.02562 * 8 7 5 32 32 H 1.08994 * 109.47143 * 174.99584 * 13 2 1 33 33 H 1.08999 * 109.46732 * 54.99436 * 13 2 1 34 34 H 1.00901 * 111.00115 * 56.04631 * 14 13 2 35 35 H 0.97003 * 120.00153 * 359.97438 * 18 17 15 36 36 H 0.96998 * 120.00147 * 180.02562 * 18 17 15 37 37 H 1.08005 * 120.42066 * 0.02562 * 21 20 15 38 38 H 1.08003 * 120.79538 * 180.02562 * 22 21 20 39 39 H 1.07996 * 120.42283 * 179.97438 * 23 22 21 40 40 H 1.07999 * 119.61911 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6414 0.0570 -2.4765 6 1 1.0807 0.9746 -2.3757 7 6 1.9933 -0.4017 -3.7283 8 7 1.6449 0.2773 -4.7994 9 14 2.9635 -1.9884 -3.9028 10 1 2.0243 -3.1326 -4.0201 11 1 3.8125 -1.9182 -5.1191 12 1 3.8252 -2.1756 -2.7079 13 6 2.0400 -0.7213 1.2493 14 7 1.6514 0.0374 2.4456 15 6 2.1258 -0.6266 3.6672 16 1 3.0895 -1.0976 3.4738 17 6 1.1292 -1.6758 4.0879 18 7 1.3560 -2.4169 5.1906 19 8 0.1227 -1.8528 3.4348 20 6 2.2765 0.3928 4.7668 21 6 3.1601 0.1547 5.8026 22 6 3.2917 1.0990 6.8089 23 6 2.5255 2.2526 6.7358 24 6 1.6622 2.4210 5.6700 25 7 1.5640 1.5016 4.7295 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 3.1263 -0.7995 -1.2056 30 1 1.6053 -1.7198 -1.2951 31 1 1.8922 -0.0456 -5.6800 32 1 3.1263 -0.7996 1.2056 33 1 1.6053 -1.7198 1.2951 34 1 0.6529 0.1793 2.4753 35 1 2.1608 -2.2751 5.7132 36 1 0.7148 -3.0925 5.4612 37 1 3.7415 -0.7552 5.8272 38 1 3.9746 0.9401 7.6304 39 1 2.6020 3.0094 7.5024 40 1 1.0623 3.3168 5.6055 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602672860.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:52 Heat of formation + Delta-G solvation = -10.459879 kcal Electronic energy + Delta-G solvation = -21249.152288 eV Core-core repulsion = 18063.373123 eV Total energy + Delta-G solvation = -3185.779165 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.82738 -39.44147 -36.65478 -34.42946 -33.85937 -32.63076 -32.17584 -31.04623 -27.86380 -26.74989 -24.83091 -23.67036 -22.94829 -21.86635 -20.49358 -18.97201 -17.99725 -17.31010 -17.10401 -16.62528 -16.28092 -16.03627 -14.90294 -14.84448 -14.50964 -14.08643 -13.84118 -13.67723 -13.57785 -13.27863 -12.67881 -12.50254 -12.21980 -11.99505 -11.79924 -11.50414 -10.90250 -10.69270 -10.53046 -10.30040 -10.10954 -9.93604 -9.70841 -9.65379 -9.58178 -9.34369 -9.18871 -8.95686 -8.43508 -8.22985 -5.93777 -3.89884 0.78905 1.04473 2.39295 3.23506 3.37637 3.44274 3.48362 3.60887 4.03011 4.15391 4.53187 4.54281 4.58646 4.76195 4.81495 4.91516 5.03633 5.26574 5.39967 5.40398 5.73188 5.76921 5.84193 5.86984 6.11713 6.29818 6.39285 6.50132 6.52427 6.65128 6.86443 7.00207 7.11109 7.20146 7.27057 7.42588 7.58088 7.69426 7.86090 7.91724 8.01426 8.67011 9.12909 9.69366 11.19826 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025000 B = 0.003789 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.719658 B = 7387.941490 C = 7754.819434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.072 4.072 3 H 0.071 0.929 4 C -0.008 4.008 5 C -0.509 4.509 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.878 3.122 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.056 3.944 14 N -0.646 5.646 15 C 0.115 3.885 16 H 0.119 0.881 17 C 0.495 3.505 18 N -0.855 5.855 19 O -0.525 6.525 20 C 0.147 3.853 21 C -0.176 4.176 22 C -0.073 4.073 23 C -0.178 4.178 24 C 0.105 3.895 25 N -0.448 5.448 26 H 0.065 0.935 27 H 0.041 0.959 28 H 0.036 0.964 29 H 0.014 0.986 30 H 0.010 0.990 31 H 0.261 0.739 32 H 0.065 0.935 33 H 0.031 0.969 34 H 0.361 0.639 35 H 0.398 0.602 36 H 0.399 0.601 37 H 0.133 0.867 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.404 -1.728 28.413 28.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.091 4.091 3 H 0.090 0.910 4 C -0.046 4.046 5 C -0.548 4.548 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.546 5.546 9 Si 0.706 3.294 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.191 1.191 13 C -0.072 4.072 14 N -0.278 5.278 15 C -0.001 4.001 16 H 0.137 0.863 17 C 0.277 3.723 18 N -0.420 5.420 19 O -0.399 6.399 20 C 0.008 3.992 21 C -0.197 4.197 22 C -0.099 4.099 23 C -0.198 4.198 24 C -0.053 4.053 25 N -0.157 5.157 26 H 0.084 0.916 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.032 0.968 30 H 0.028 0.972 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.049 0.951 34 H 0.184 0.816 35 H 0.227 0.773 36 H 0.230 0.770 37 H 0.151 0.849 38 H 0.153 0.847 39 H 0.152 0.848 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 3.753 -1.120 26.889 27.173 hybrid contribution 0.734 -1.948 0.990 2.305 sum 4.486 -3.069 27.879 28.404 Atomic orbital electron populations 1.21718 0.95939 1.00755 1.00700 1.20980 0.95507 0.99992 0.92579 0.91032 1.19602 0.95790 0.95758 0.93443 1.21152 1.35016 1.09517 0.89070 0.90761 1.25027 0.95745 0.96909 0.95964 1.69919 1.47394 1.39357 0.97944 0.86803 0.80643 0.84456 0.77514 1.20456 1.21558 1.19109 1.22305 0.99759 0.95322 0.89824 1.60733 1.22411 1.46095 0.98600 1.20549 0.98760 0.89717 0.91119 0.86347 1.21725 0.87847 0.82422 0.80352 1.43981 1.27483 1.41264 1.29274 1.90794 1.27925 1.68110 1.53117 1.20777 0.92482 0.92919 0.93034 1.21854 1.00733 1.01277 0.95788 1.21507 0.97398 0.93168 0.97807 1.22193 0.98329 0.98852 1.00428 1.22897 0.95696 0.97485 0.89206 1.67486 1.21996 1.00912 1.25275 0.91553 0.93941 0.94527 0.96767 0.97213 0.92917 0.91638 0.95092 0.81584 0.77322 0.76999 0.84884 0.84743 0.84817 0.82557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 8.77 37.16 0.33 -2.46 16 2 C -0.07 -1.53 2.55 -90.62 -0.23 -1.76 16 3 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 4 C -0.01 -0.20 3.52 -27.89 -0.10 -0.30 16 5 C -0.51 -14.91 8.96 -34.44 -0.31 -15.22 16 6 H 0.07 2.33 7.30 -52.48 -0.38 1.95 16 7 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 8 N -0.91 -28.70 13.96 55.43 0.77 -27.93 16 9 Si 0.88 22.43 27.47 -169.99 -4.67 17.76 16 10 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 12 H -0.27 -6.52 6.54 56.52 0.37 -6.15 16 13 C 0.06 1.01 4.84 -3.82 -0.02 0.99 16 14 N -0.65 -10.37 5.64 -109.19 -0.62 -10.99 16 15 C 0.11 1.42 2.66 -70.02 -0.19 1.24 16 16 H 0.12 1.22 7.77 -51.93 -0.40 0.82 16 17 C 0.49 6.31 7.24 -10.98 -0.08 6.23 16 18 N -0.86 -6.76 8.77 31.22 0.27 -6.48 16 19 O -0.52 -9.09 16.14 5.56 0.09 -9.00 16 20 C 0.15 1.66 5.79 -82.59 -0.48 1.18 16 21 C -0.18 -1.35 8.84 -39.45 -0.35 -1.70 16 22 C -0.07 -0.48 10.18 -39.28 -0.40 -0.88 16 23 C -0.18 -1.30 10.11 -39.44 -0.40 -1.70 16 24 C 0.10 1.02 11.18 -17.55 -0.20 0.83 16 25 N -0.45 -5.77 9.73 -9.48 -0.09 -5.87 16 26 H 0.07 1.50 6.95 -51.93 -0.36 1.14 16 27 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.04 0.69 6.68 -51.93 -0.35 0.34 16 29 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 30 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 31 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 32 H 0.07 1.10 8.05 -51.93 -0.42 0.68 16 33 H 0.03 0.57 7.62 -51.93 -0.40 0.18 16 34 H 0.36 6.36 6.00 -39.29 -0.24 6.12 16 35 H 0.40 1.90 7.33 -40.82 -0.30 1.60 16 36 H 0.40 2.77 8.93 -40.82 -0.36 2.41 16 37 H 0.13 0.59 7.58 -52.48 -0.40 0.20 16 38 H 0.13 0.50 8.06 -52.48 -0.42 0.08 16 39 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 40 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 330.31 15.07 4.98 4.98 Total: -1.00 -36.18 330.31 -7.43 -43.61 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -5.65 Total: 5.65 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -2.51 Total: -11.73 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: 0.34 Total: -51.27 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.09 Total: -9.00 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.67 Total: 17.76 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -36.18 -7.43 -43.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602672860.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.153 kcal (2) G-P(sol) polarization free energy of solvation -36.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds