Wall clock time and date at job start Mon Mar 30 2020 02:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47394 * 2 1 4 4 C 1.53004 * 109.47095 * 120.00144 * 2 1 3 5 5 C 1.50698 * 109.46846 * 294.99730 * 4 2 1 6 6 H 1.07998 * 120.00378 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99720 * 180.02562 * 5 4 2 8 8 N 1.31505 * 120.00223 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99719 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47636 * 59.99736 * 9 7 5 11 11 H 1.48505 * 109.46883 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47089 * 299.99190 * 9 7 5 13 13 C 1.53001 * 109.46723 * 239.99746 * 2 1 3 14 14 N 1.46897 * 109.47274 * 65.00188 * 13 2 1 15 15 C 1.46899 * 111.00101 * 179.97438 * 14 13 2 16 16 H 1.08992 * 109.47259 * 35.00320 * 15 14 13 17 17 C 1.52996 * 109.46973 * 274.99799 * 15 14 13 18 18 C 1.53000 * 109.47328 * 179.97438 * 17 15 14 19 19 C 1.52997 * 109.47060 * 60.00126 * 18 17 15 20 20 C 1.53006 * 109.47127 * 300.00449 * 19 18 17 21 21 F 1.39900 * 109.46764 * 299.99647 * 20 19 18 22 22 F 1.39903 * 109.46814 * 180.02562 * 20 19 18 23 23 C 1.52997 * 109.47164 * 59.99836 * 20 19 18 24 24 H 1.09001 * 109.47375 * 59.99966 * 23 20 19 25 25 O 1.42905 * 109.46921 * 179.97438 * 23 20 19 26 26 H 1.08994 * 109.47371 * 59.99773 * 1 2 3 27 27 H 1.08991 * 109.47647 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46726 * 300.00478 * 1 2 3 29 29 H 1.08995 * 109.46980 * 54.99394 * 4 2 1 30 30 H 1.08992 * 109.46889 * 174.99639 * 4 2 1 31 31 H 0.97008 * 120.00367 * 180.02562 * 8 7 5 32 32 H 1.09001 * 109.47307 * 305.00231 * 13 2 1 33 33 H 1.08998 * 109.47159 * 185.00207 * 13 2 1 34 34 H 1.00902 * 110.99811 * 56.04516 * 14 13 2 35 35 H 1.09004 * 109.47368 * 60.00191 * 17 15 14 36 36 H 1.09001 * 109.47372 * 300.00346 * 17 15 14 37 37 H 1.09002 * 109.47398 * 180.02562 * 18 17 15 38 38 H 1.09001 * 109.47194 * 300.00476 * 18 17 15 39 39 H 1.08998 * 109.47533 * 59.99948 * 19 18 17 40 40 H 1.08996 * 109.47853 * 180.02562 * 19 18 17 41 41 H 0.96691 * 114.00079 * 300.00200 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6414 0.0570 2.4766 6 1 1.0807 0.9746 2.3757 7 6 1.9933 -0.4017 3.7283 8 7 2.6764 -1.5187 3.8511 9 14 1.4985 0.5627 5.2496 10 1 0.0185 0.6683 5.3093 11 1 1.9936 -0.1373 6.4621 12 1 2.0898 1.9235 5.1871 13 6 2.0399 -0.7213 -1.2492 14 7 1.6513 0.0373 -2.4456 15 6 2.1256 -0.6267 -3.6671 16 1 2.0822 -1.7075 -3.5334 17 6 3.5691 -0.2052 -3.9491 18 6 4.0634 -0.8972 -5.2209 19 6 3.1749 -0.4937 -6.3993 20 6 1.7313 -0.9151 -6.1174 21 9 1.6758 -2.3024 -5.9451 22 9 0.9190 -0.5466 -7.1952 23 6 1.2371 -0.2231 -4.8455 24 1 1.2804 0.8578 -4.9797 25 8 -0.1114 -0.6163 -4.5826 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0275 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6053 -1.7198 1.2952 30 1 3.1262 -0.7995 1.2055 31 1 2.9237 -1.8417 4.7318 32 1 1.6052 -1.7199 -1.2951 33 1 3.1262 -0.7996 -1.2056 34 1 1.9881 0.9872 -2.3967 35 1 4.2022 -0.4931 -3.1098 36 1 3.6125 0.8757 -4.0828 37 1 5.0919 -0.5973 -5.4215 38 1 4.0201 -1.9781 -5.0868 39 1 3.2181 0.5872 -6.5335 40 1 3.5266 -0.9870 -7.3054 41 1 -0.7317 -0.3911 -5.2893 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602692455.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:40 Heat of formation + Delta-G solvation = -177.702518 kcal Electronic energy + Delta-G solvation = -22570.735172 eV Core-core repulsion = 18927.014636 eV Total energy + Delta-G solvation = -3643.720536 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.159 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.22813 -47.21330 -39.08215 -36.39839 -35.75837 -33.59208 -31.89929 -29.44761 -28.82165 -26.67925 -25.03778 -23.02633 -22.74451 -21.84256 -20.57825 -19.03623 -18.05462 -17.54101 -16.79168 -16.51955 -16.16208 -15.33945 -15.01780 -14.63591 -14.28721 -14.19633 -13.94813 -13.54733 -13.52790 -13.26498 -13.19131 -13.02610 -12.56519 -12.27573 -12.15065 -11.85181 -11.46138 -11.36485 -11.30642 -11.21406 -10.82233 -10.78527 -10.68126 -10.26296 -10.22403 -10.06893 -9.67088 -9.11003 -8.93883 -8.30488 -8.10963 -5.95397 -3.96468 3.33172 3.35960 3.40268 3.42903 3.62119 3.78392 3.96531 4.26935 4.44465 4.52303 4.62285 4.72719 4.88365 4.91306 4.94777 5.25689 5.36442 5.40336 5.44165 5.56988 5.62564 5.69659 5.79331 5.93959 5.95116 6.19462 6.46784 6.58590 6.74178 7.04576 7.21074 7.24483 7.32841 7.42863 7.63497 7.71835 7.88263 8.04903 8.48991 9.09704 9.66734 11.16123 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.037869 B = 0.003388 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.208467 B = 8263.202958 C = 8592.315885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.081 4.081 3 H 0.052 0.948 4 C 0.028 3.972 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.066 3.934 14 N -0.669 5.669 15 C 0.095 3.905 16 H 0.092 0.908 17 C -0.154 4.154 18 C -0.118 4.118 19 C -0.158 4.158 20 C 0.255 3.745 21 F -0.190 7.190 22 F -0.204 7.204 23 C 0.089 3.911 24 H 0.081 0.919 25 O -0.527 6.527 26 H 0.043 0.957 27 H 0.039 0.961 28 H 0.052 0.948 29 H 0.016 0.984 30 H 0.012 0.988 31 H 0.260 0.740 32 H 0.068 0.932 33 H 0.025 0.975 34 H 0.337 0.663 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.533 3.269 -22.442 22.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.100 4.100 3 H 0.071 0.929 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.062 4.062 14 N -0.298 5.298 15 C -0.016 4.016 16 H 0.110 0.890 17 C -0.194 4.194 18 C -0.156 4.156 19 C -0.197 4.197 20 C 0.217 3.783 21 F -0.171 7.171 22 F -0.185 7.185 23 C 0.028 3.972 24 H 0.099 0.901 25 O -0.331 6.331 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.035 0.965 30 H 0.030 0.970 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.043 0.957 34 H 0.155 0.845 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.113 0.887 40 H 0.107 0.893 41 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 1.205 2.618 -21.775 21.964 hybrid contribution 0.439 0.728 0.207 0.874 sum 1.644 3.345 -21.568 21.888 Atomic orbital electron populations 1.21576 0.95590 1.00681 1.00107 1.21195 0.96140 0.98778 0.93925 0.92908 1.19115 0.95830 0.95626 0.90424 1.21204 1.34626 1.08285 0.91009 0.92624 1.25015 0.95340 0.95094 0.99066 1.69954 1.39084 1.21220 1.23455 0.86694 0.78938 0.80064 0.82507 1.20255 1.21391 1.20342 1.22198 0.97090 0.97813 0.89115 1.60422 1.63393 1.05304 1.00642 1.21449 0.89682 1.00863 0.89626 0.88958 1.22397 0.97155 1.01154 0.98654 1.21489 0.99160 1.01883 0.93060 1.22546 0.91767 1.04005 1.01336 1.22116 0.91767 0.77883 0.86492 1.93017 1.97106 1.31326 1.95683 1.92990 1.75640 1.91420 1.58406 1.22724 0.84923 0.98030 0.91565 0.90132 1.86757 1.16082 1.83693 1.46553 0.93784 0.94151 0.92922 0.96534 0.96984 0.93060 0.91385 0.95676 0.84535 0.89924 0.91000 0.90127 0.90553 0.88680 0.89263 0.77893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.45 8.89 37.16 0.33 -2.12 16 2 C -0.08 -1.67 2.48 -90.62 -0.22 -1.89 16 3 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.45 8.41 -34.44 -0.29 -14.74 16 6 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.12 13.28 55.43 0.74 -26.39 16 9 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.07 1.13 4.87 -3.83 -0.02 1.12 16 14 N -0.67 -9.47 5.57 -106.73 -0.59 -10.07 16 15 C 0.10 1.13 2.04 -67.71 -0.14 0.99 16 16 H 0.09 1.28 7.46 -51.93 -0.39 0.90 16 17 C -0.15 -1.41 5.17 -26.73 -0.14 -1.55 16 18 C -0.12 -0.90 5.80 -26.73 -0.16 -1.06 16 19 C -0.16 -1.18 5.45 -26.73 -0.15 -1.32 16 20 C 0.25 2.58 1.79 -26.73 -0.05 2.53 16 21 F -0.19 -2.40 15.97 2.25 0.04 -2.37 16 22 F -0.20 -2.15 16.68 2.25 0.04 -2.11 16 23 C 0.09 0.96 2.71 -26.73 -0.07 0.89 16 24 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 25 O -0.53 -6.70 13.13 -35.23 -0.46 -7.16 16 26 H 0.04 0.80 7.75 -51.93 -0.40 0.40 16 27 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.07 1.25 8.06 -51.93 -0.42 0.83 16 33 H 0.03 0.42 7.43 -51.93 -0.39 0.04 16 34 H 0.34 4.34 8.47 -39.29 -0.33 4.00 16 35 H 0.08 0.83 7.45 -51.93 -0.39 0.44 16 36 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.65 7.80 -51.93 -0.41 0.25 16 39 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.37 3.35 8.73 45.56 0.40 3.74 16 LS Contribution 331.75 15.07 5.00 5.00 Total: -1.00 -31.71 331.75 -7.38 -39.09 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -5.99 Total: 2.28 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: -1.12 Total: -15.06 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.14 Total: -36.45 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -0.46 Total: -7.16 kcal Atomic # 9 Polarization: -4.55 SS G_CDS: 0.07 Total: -4.48 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.71 -7.38 -39.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602692455.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.613 kcal (2) G-P(sol) polarization free energy of solvation -31.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds