Wall clock time and date at job start Mon Mar 30 2020 02:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47686 * 2 1 4 4 C 1.53003 * 109.47453 * 239.99893 * 2 1 3 5 5 C 1.50701 * 109.47148 * 64.99802 * 4 2 1 6 6 H 1.08001 * 119.99580 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00143 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99965 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99757 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47258 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46739 * 120.00166 * 9 7 5 12 12 H 1.48500 * 109.46727 * 240.00177 * 9 7 5 13 13 C 1.53001 * 109.47102 * 119.99845 * 2 1 3 14 14 N 1.46897 * 109.47274 * 294.99918 * 13 2 1 15 15 C 1.46899 * 111.00101 * 179.97438 * 14 13 2 16 16 H 1.08992 * 109.47259 * 35.00320 * 15 14 13 17 17 C 1.52996 * 109.46973 * 274.99799 * 15 14 13 18 18 C 1.53000 * 109.47328 * 179.97438 * 17 15 14 19 19 C 1.52997 * 109.47060 * 60.00126 * 18 17 15 20 20 C 1.53006 * 109.47127 * 300.00449 * 19 18 17 21 21 F 1.39900 * 109.46764 * 299.99647 * 20 19 18 22 22 F 1.39903 * 109.46814 * 180.02562 * 20 19 18 23 23 C 1.52997 * 109.47164 * 59.99836 * 20 19 18 24 24 H 1.09001 * 109.47375 * 59.99966 * 23 20 19 25 25 O 1.42905 * 109.46921 * 179.97438 * 23 20 19 26 26 H 1.08994 * 109.47474 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47240 * 300.00426 * 1 2 3 28 28 H 1.09007 * 109.46827 * 59.99758 * 1 2 3 29 29 H 1.08994 * 109.47412 * 185.00507 * 4 2 1 30 30 H 1.09008 * 109.46821 * 305.00484 * 4 2 1 31 31 H 0.96988 * 119.99855 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.47307 * 174.99961 * 13 2 1 33 33 H 1.08998 * 109.47159 * 54.99936 * 13 2 1 34 34 H 1.00902 * 110.99811 * 56.04516 * 14 13 2 35 35 H 1.09004 * 109.47368 * 60.00191 * 17 15 14 36 36 H 1.09001 * 109.47372 * 300.00346 * 17 15 14 37 37 H 1.09002 * 109.47398 * 180.02562 * 18 17 15 38 38 H 1.09001 * 109.47194 * 300.00476 * 18 17 15 39 39 H 1.08998 * 109.47533 * 59.99948 * 19 18 17 40 40 H 1.08996 * 109.47853 * 180.02562 * 19 18 17 41 41 H 0.96691 * 114.00079 * 300.00200 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0807 0.9745 -2.3757 7 6 1.9924 -0.4023 -3.7284 8 7 2.6748 -1.5199 -3.8512 9 14 1.4988 0.5628 -5.2497 10 1 0.7434 1.7749 -4.8434 11 1 2.7172 0.9666 -5.9965 12 1 0.6441 -0.2858 -6.1184 13 6 2.0400 -0.7212 1.2493 14 7 1.6514 0.0374 2.4456 15 6 2.1247 -0.6271 3.6672 16 1 3.0882 -1.0987 3.4742 17 6 1.1120 -1.6917 4.0937 18 6 1.6053 -2.3843 5.3657 19 6 1.7590 -1.3501 6.4827 20 6 2.7717 -0.2854 6.0561 21 9 4.0082 -0.8909 5.8079 22 9 2.9126 0.6599 7.0778 23 6 2.2783 0.4072 4.7842 24 1 1.3149 0.8789 4.9776 25 8 3.2239 1.4020 4.3862 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 3.1263 -0.7996 -1.2055 30 1 1.6053 -1.7199 -1.2951 31 1 2.9214 -1.8431 -4.7318 32 1 3.1263 -0.7995 1.2056 33 1 1.6053 -1.7197 1.2952 34 1 0.6528 0.1793 2.4753 35 1 1.0028 -2.4288 3.2982 36 1 0.1485 -1.2200 4.2867 37 1 0.8840 -3.1431 5.6693 38 1 2.5687 -2.8560 5.1723 39 1 0.7956 -0.8783 6.6762 40 1 2.1108 -1.8433 7.3888 41 1 3.3713 2.0916 5.0478 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602692456.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:43 Heat of formation + Delta-G solvation = -177.407909 kcal Electronic energy + Delta-G solvation = -22565.448591 eV Core-core repulsion = 18921.740830 eV Total energy + Delta-G solvation = -3643.707761 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.159 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.22422 -47.20913 -39.09851 -36.46429 -35.77179 -33.57234 -31.89831 -29.45032 -28.81069 -26.76610 -25.21149 -23.06738 -22.74099 -21.78983 -20.53022 -18.97501 -18.05140 -17.57573 -16.80889 -16.55400 -16.18985 -15.34866 -15.15705 -14.70025 -14.28775 -14.19488 -13.78420 -13.53609 -13.52495 -13.19822 -13.10683 -13.06478 -12.78855 -12.38081 -12.13346 -11.87871 -11.64729 -11.36709 -11.34830 -11.19661 -10.87645 -10.79650 -10.70661 -10.30381 -10.19381 -10.05137 -9.70251 -9.13232 -8.93160 -8.31080 -8.13173 -5.95589 -3.96522 3.33384 3.33727 3.41329 3.45489 3.62253 3.78666 3.96526 4.27020 4.44598 4.52381 4.62020 4.72554 4.88108 4.91161 4.94584 5.25486 5.36232 5.40391 5.43945 5.57085 5.62299 5.68412 5.81669 5.87353 5.93350 6.07176 6.26251 6.46202 6.57776 6.93454 7.11775 7.19142 7.31256 7.43637 7.63779 7.72942 7.88522 8.04919 8.48819 9.10078 9.66865 11.16041 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.036348 B = 0.003364 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.145463 B = 8322.122937 C = 8478.050454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.084 4.084 3 H 0.066 0.934 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.057 0.943 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.067 3.933 14 N -0.671 5.671 15 C 0.094 3.906 16 H 0.093 0.907 17 C -0.154 4.154 18 C -0.118 4.118 19 C -0.158 4.158 20 C 0.255 3.745 21 F -0.190 7.190 22 F -0.203 7.203 23 C 0.089 3.911 24 H 0.081 0.919 25 O -0.527 6.527 26 H 0.040 0.960 27 H 0.031 0.969 28 H 0.062 0.938 29 H 0.015 0.985 30 H 0.014 0.986 31 H 0.259 0.741 32 H 0.068 0.932 33 H 0.024 0.976 34 H 0.337 0.663 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.896 -0.022 22.681 23.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.085 0.915 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.061 4.061 14 N -0.301 5.301 15 C -0.017 4.017 16 H 0.111 0.889 17 C -0.193 4.193 18 C -0.156 4.156 19 C -0.197 4.197 20 C 0.218 3.782 21 F -0.171 7.171 22 F -0.184 7.184 23 C 0.027 3.973 24 H 0.098 0.902 25 O -0.331 6.331 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.081 0.919 29 H 0.034 0.966 30 H 0.032 0.968 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.043 0.957 34 H 0.157 0.843 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.113 0.887 40 H 0.108 0.892 41 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -3.219 -0.051 21.961 22.195 hybrid contribution -0.689 0.042 -0.145 0.705 sum -3.907 -0.008 21.816 22.163 Atomic orbital electron populations 1.21740 0.96736 1.00348 1.00260 1.21224 0.94771 1.00247 0.94068 0.91526 1.19115 0.96201 0.95319 0.90362 1.21279 1.34518 1.08223 0.90971 0.92511 1.25022 0.95351 0.95096 0.99102 1.69974 1.39218 1.21252 1.23242 0.86577 0.78256 0.80124 0.83300 1.19750 1.21084 1.21152 1.22180 1.00505 0.94290 0.89168 1.60462 1.19256 1.49903 1.00515 1.21455 0.99734 0.90677 0.89822 0.88903 1.22394 0.99390 0.99214 0.98335 1.21489 1.03103 0.97339 0.93657 1.22546 0.99329 0.96746 1.01033 1.22111 0.82531 0.86069 0.87539 1.93018 1.45739 1.83736 1.94613 1.92990 1.96397 1.66818 1.62235 1.22725 0.93026 0.90464 0.91065 0.90152 1.86761 1.62547 1.38432 1.45343 0.94052 0.95038 0.91855 0.96617 0.96775 0.93174 0.91304 0.95738 0.84329 0.89958 0.91045 0.90127 0.90525 0.88683 0.89243 0.77863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 8.77 37.16 0.33 -2.11 16 2 C -0.08 -1.72 2.54 -90.62 -0.23 -1.95 16 3 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.40 8.41 -34.44 -0.29 -14.69 16 6 H 0.06 1.56 7.06 -52.49 -0.37 1.19 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.12 13.29 55.43 0.74 -26.39 16 9 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 C 0.07 1.16 4.94 -3.83 -0.02 1.14 16 14 N -0.67 -9.73 6.12 -106.73 -0.65 -10.38 16 15 C 0.09 1.14 2.04 -67.71 -0.14 1.01 16 16 H 0.09 1.31 7.46 -51.93 -0.39 0.92 16 17 C -0.15 -1.41 5.17 -26.73 -0.14 -1.55 16 18 C -0.12 -0.90 5.80 -26.73 -0.16 -1.05 16 19 C -0.16 -1.18 5.45 -26.73 -0.15 -1.33 16 20 C 0.25 2.61 1.79 -26.73 -0.05 2.56 16 21 F -0.19 -2.42 15.97 2.25 0.04 -2.39 16 22 F -0.20 -2.16 16.68 2.25 0.04 -2.12 16 23 C 0.09 0.98 2.71 -26.73 -0.07 0.90 16 24 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 25 O -0.53 -6.86 13.13 -35.23 -0.46 -7.32 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.03 0.47 6.68 -51.93 -0.35 0.13 16 28 H 0.06 1.26 6.95 -51.93 -0.36 0.90 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.01 0.38 8.14 -51.92 -0.42 -0.04 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.07 1.28 8.06 -51.93 -0.42 0.87 16 33 H 0.02 0.41 7.43 -51.93 -0.39 0.02 16 34 H 0.34 4.44 6.72 -39.29 -0.26 4.17 16 35 H 0.08 0.82 7.45 -51.93 -0.39 0.43 16 36 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.65 7.80 -51.93 -0.41 0.25 16 39 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.37 3.43 8.73 45.56 0.40 3.83 16 LS Contribution 329.49 15.07 4.97 4.97 Total: -1.00 -31.80 329.49 -7.36 -39.16 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -5.87 Total: 2.69 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: -1.13 Total: -15.01 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.08 Total: -36.77 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: -0.46 Total: -7.32 kcal Atomic # 9 Polarization: -4.58 SS G_CDS: 0.07 Total: -4.51 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.80 -7.36 -39.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602692456.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.247 kcal (2) G-P(sol) polarization free energy of solvation -31.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds