Wall clock time and date at job start Mon Mar 30 2020 02:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09010 * 109.46684 * 2 1 4 4 C 1.50702 * 109.47067 * 240.00626 * 2 1 3 5 5 C 1.38250 * 119.96917 * 280.82635 * 4 2 1 6 6 C 1.38197 * 120.02161 * 179.76613 * 5 4 2 7 7 C 1.38455 * 119.97602 * 0.51538 * 6 5 4 8 8 F 1.35102 * 120.02633 * 179.76380 * 7 6 5 9 9 C 1.38459 * 119.95052 * 359.74499 * 7 6 5 10 10 C 1.38206 * 119.97092 * 359.97438 * 9 7 6 11 11 N 1.46894 * 109.47480 * 119.99912 * 2 1 3 12 12 C 1.46903 * 111.00125 * 175.15790 * 11 2 1 13 13 C 1.46901 * 111.00291 * 299.11512 * 11 2 1 14 14 C 1.52998 * 109.47376 * 163.31141 * 13 11 2 15 15 C 1.50701 * 115.55005 * 148.21731 * 14 13 11 16 16 H 1.07999 * 119.99785 * 114.79196 * 15 14 13 17 17 C 1.37874 * 120.00280 * 294.79696 * 15 14 13 18 18 N 1.31517 * 119.99804 * 350.77738 * 17 15 14 19 19 Si 1.86796 * 119.99969 * 170.77574 * 17 15 14 20 20 H 1.48504 * 109.47135 * 60.00132 * 19 17 15 21 21 H 1.48500 * 109.47148 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47504 * 299.99909 * 19 17 15 23 23 C 1.53002 * 117.49930 * 2.51326 * 14 13 11 24 24 C 1.53000 * 117.49769 * 293.89193 * 14 13 11 25 25 H 1.09003 * 109.47177 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47632 * 60.00170 * 1 2 3 27 27 H 1.09001 * 109.47043 * 299.99341 * 1 2 3 28 28 H 1.07997 * 119.98543 * 0.02843 * 5 4 2 29 29 H 1.08004 * 120.00873 * 180.25888 * 6 5 4 30 30 H 1.08002 * 120.01674 * 179.97438 * 9 7 6 31 31 H 1.08002 * 119.98518 * 180.02562 * 10 9 7 32 32 H 1.09001 * 109.46727 * 58.38645 * 12 11 2 33 33 H 1.08998 * 109.47174 * 178.37919 * 12 11 2 34 34 H 1.08998 * 109.47145 * 298.38637 * 12 11 2 35 35 H 1.09001 * 109.46803 * 283.31471 * 13 11 2 36 36 H 1.08995 * 109.46844 * 43.30506 * 13 11 2 37 37 H 0.97005 * 119.99466 * 185.00971 * 18 17 15 38 38 H 1.09000 * 117.49488 * 359.97438 * 23 14 13 39 39 H 1.08996 * 117.50230 * 145.01785 * 23 14 13 40 40 H 1.08996 * 117.49734 * 214.98081 * 24 14 13 41 41 H 1.09003 * 117.49767 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0323 -0.7103 -1.2306 5 6 2.0504 -2.0921 -1.2714 6 6 2.5063 -2.7445 -2.4011 7 6 2.9550 -2.0139 -3.4882 8 9 3.4053 -2.6507 -4.5913 9 6 2.9414 -0.6301 -3.4442 10 6 2.4796 0.0203 -2.3155 11 7 2.0197 -0.6924 1.1994 12 6 3.4836 -0.8131 1.1768 13 6 1.5661 -0.0142 2.4210 14 6 1.7247 -0.9562 3.6161 15 6 2.0340 -0.2901 4.9321 16 1 1.3204 -0.3363 5.7415 17 6 3.2278 0.3782 5.1028 18 7 4.1704 0.2838 4.1905 19 14 3.5062 1.4177 6.6296 20 1 3.3986 0.5612 7.8380 21 1 4.8595 2.0265 6.5739 22 1 2.4821 2.4913 6.6910 23 6 2.3467 -2.3296 3.3556 24 6 0.8495 -2.2108 3.6478 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 0.5137 0.8901 28 1 1.7042 -2.6617 -0.4217 29 1 2.5164 -3.8240 -2.4343 30 1 3.2916 -0.0591 -4.2914 31 1 2.4686 1.0997 -2.2811 32 1 3.9289 0.1797 1.1116 33 1 3.8218 -1.3037 2.0894 34 1 3.7861 -1.4045 0.3127 35 1 2.1651 0.8820 2.5827 36 1 0.5177 0.2640 2.3141 37 1 5.0362 0.6937 4.3436 38 1 2.6425 -2.5621 2.3326 39 1 2.9799 -2.7516 4.1360 40 1 0.4977 -2.5546 4.6204 41 1 0.1605 -2.3649 2.8173 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602756971.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:03 Heat of formation + Delta-G solvation = 17.677222 kcal Electronic energy + Delta-G solvation = -21960.924612 eV Core-core repulsion = 18756.445602 eV Total energy + Delta-G solvation = -3204.479010 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.83962 -39.55481 -37.59468 -35.15500 -31.99946 -31.29737 -30.95791 -29.14135 -26.73320 -25.20585 -24.02319 -23.01678 -22.22254 -20.88796 -19.89738 -18.54141 -17.58979 -16.37491 -16.25401 -15.55803 -15.41832 -14.75889 -14.65099 -14.40193 -14.09551 -13.57597 -13.46249 -13.19186 -12.92265 -12.67778 -12.32698 -12.11798 -11.71225 -11.31862 -11.29339 -11.04934 -10.94640 -10.92327 -10.84785 -10.67474 -10.49948 -10.15925 -9.87725 -9.15035 -9.00029 -8.91255 -8.41927 -8.39559 -7.89946 -7.46354 -6.03437 -4.07069 1.22953 1.33232 3.28756 3.34157 3.37193 3.67891 4.32701 4.38045 4.58482 4.87122 4.89614 4.95373 5.22323 5.40803 5.44935 5.52341 5.62345 5.63640 5.88338 5.97491 6.05321 6.16330 6.22415 6.24720 6.37206 6.39266 6.45154 6.46944 6.57798 6.69770 6.72180 6.89010 6.92573 6.98533 7.09716 7.25767 7.32569 7.54839 7.64545 7.85174 7.95830 8.04310 8.54508 8.93125 9.55722 11.03002 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028116 B = 0.004402 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.643773 B = 6359.406005 C = 6493.120112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.115 3.885 3 H 0.042 0.958 4 C -0.072 4.072 5 C -0.061 4.061 6 C -0.158 4.158 7 C 0.085 3.915 8 F -0.147 7.147 9 C -0.158 4.158 10 C -0.092 4.092 11 N -0.529 5.529 12 C 0.027 3.973 13 C 0.098 3.902 14 C 0.052 3.948 15 C -0.496 4.496 16 H 0.057 0.943 17 C 0.073 3.927 18 N -0.874 5.874 19 Si 0.887 3.113 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.172 4.172 24 C -0.205 4.205 25 H 0.063 0.937 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.143 0.857 29 H 0.131 0.869 30 H 0.129 0.871 31 H 0.127 0.873 32 H 0.016 0.984 33 H 0.107 0.893 34 H 0.041 0.959 35 H 0.046 0.954 36 H 0.053 0.947 37 H 0.259 0.741 38 H 0.085 0.915 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.436 -1.480 -12.942 13.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.006 3.994 3 H 0.060 0.940 4 C -0.073 4.073 5 C -0.079 4.079 6 C -0.177 4.177 7 C 0.066 3.934 8 F -0.126 7.126 9 C -0.176 4.176 10 C -0.111 4.111 11 N -0.254 5.254 12 C -0.120 4.120 13 C -0.029 4.029 14 C 0.051 3.949 15 C -0.534 4.534 16 H 0.075 0.925 17 C -0.130 4.130 18 N -0.511 5.511 19 Si 0.715 3.285 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.209 4.209 24 C -0.242 4.242 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.161 0.839 29 H 0.149 0.851 30 H 0.147 0.853 31 H 0.145 0.855 32 H 0.034 0.966 33 H 0.125 0.875 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.103 0.897 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.440 -1.842 -13.049 13.620 hybrid contribution 0.820 1.277 0.600 1.632 sum -2.620 -0.565 -12.449 12.735 Atomic orbital electron populations 1.21879 0.93880 1.02592 1.01404 1.20535 0.95357 0.94835 0.88694 0.94043 1.19995 0.98027 0.94032 0.95221 1.21029 0.96013 0.94114 0.96754 1.21185 1.02655 1.00611 0.93246 1.17726 1.00876 0.90757 0.84081 1.91466 1.87096 1.82371 1.51644 1.21011 1.04063 0.92492 1.00076 1.20901 0.97788 1.00040 0.92328 1.62200 1.11672 1.50603 1.00913 1.22553 0.86623 0.99890 1.02963 1.21733 0.97521 0.96538 0.87107 1.18794 0.97555 0.85309 0.93269 1.20504 1.02883 1.33194 0.96866 0.92469 1.24933 0.96028 0.95995 0.96029 1.69950 1.03423 1.43911 1.33789 0.86753 0.77147 0.80985 0.83654 1.20374 1.21400 1.20272 1.22869 0.93076 1.05146 0.99837 1.22809 0.93929 1.08024 0.99435 0.91839 0.92972 0.91614 0.83886 0.85064 0.85255 0.85461 0.96554 0.87504 0.94076 0.93592 0.92913 0.93089 0.89726 0.91614 0.91597 0.91497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.01 37.16 0.33 -1.59 16 2 C 0.11 1.77 2.28 -68.87 -0.16 1.61 16 3 H 0.04 0.67 7.99 -51.92 -0.41 0.25 16 4 C -0.07 -1.01 3.77 -104.62 -0.39 -1.40 16 5 C -0.06 -0.84 8.02 -39.59 -0.32 -1.16 16 6 C -0.16 -2.03 10.03 -39.52 -0.40 -2.42 16 7 C 0.08 1.11 7.30 -39.42 -0.29 0.82 16 8 F -0.15 -1.96 17.27 2.25 0.04 -1.92 16 9 C -0.16 -1.91 10.03 -39.51 -0.40 -2.31 16 10 C -0.09 -1.16 9.67 -39.59 -0.38 -1.54 16 11 N -0.53 -9.69 3.06 -236.29 -0.72 -10.41 16 12 C 0.03 0.54 7.89 60.07 0.47 1.01 16 13 C 0.10 2.09 4.83 -3.82 -0.02 2.07 16 14 C 0.05 1.22 1.66 -155.66 -0.26 0.96 16 15 C -0.50 -13.12 8.80 -34.44 -0.30 -13.42 16 16 H 0.06 1.53 7.83 -52.49 -0.41 1.12 16 17 C 0.07 1.93 5.16 -17.82 -0.09 1.84 16 18 N -0.87 -23.25 12.42 55.43 0.69 -22.56 16 19 Si 0.89 20.53 29.55 -169.99 -5.02 15.51 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 C -0.17 -3.87 7.98 -26.73 -0.21 -4.08 16 24 C -0.20 -4.40 9.94 -26.73 -0.27 -4.67 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.94 6.11 -51.93 -0.32 0.63 16 28 H 0.14 2.04 7.74 -52.49 -0.41 1.63 16 29 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 30 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 31 H 0.13 1.39 8.03 -52.49 -0.42 0.96 16 32 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.11 2.40 4.95 -51.93 -0.26 2.14 16 34 H 0.04 0.73 6.12 -51.93 -0.32 0.41 16 35 H 0.05 1.12 7.31 -51.93 -0.38 0.74 16 36 H 0.05 1.06 5.65 -51.93 -0.29 0.76 16 37 H 0.26 6.73 8.32 -40.82 -0.34 6.39 16 38 H 0.08 1.81 5.41 -51.93 -0.28 1.52 16 39 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 40 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 LS Contribution 330.38 15.07 4.98 4.98 Total: -1.00 -26.17 330.38 -8.73 -34.90 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -6.02 Total: 3.78 kcal Atomic # 6 Polarization: -21.61 SS G_CDS: -2.67 Total: -24.28 kcal Atomic # 7 Polarization: -32.94 SS G_CDS: -0.03 Total: -32.97 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -26.17 -8.73 -34.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602756971.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.577 kcal (2) G-P(sol) polarization free energy of solvation -26.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds