Wall clock time and date at job start Mon Mar 30 2020 02:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09010 * 109.46684 * 2 1 4 4 C 1.50702 * 109.47067 * 240.00626 * 2 1 3 5 5 C 1.38250 * 119.96917 * 280.82635 * 4 2 1 6 6 C 1.38197 * 120.02161 * 179.76613 * 5 4 2 7 7 C 1.38455 * 119.97602 * 0.51538 * 6 5 4 8 8 F 1.35102 * 120.02633 * 179.76380 * 7 6 5 9 9 C 1.38459 * 119.95052 * 359.74499 * 7 6 5 10 10 C 1.38206 * 119.97092 * 359.97438 * 9 7 6 11 11 N 1.46894 * 109.47480 * 119.99912 * 2 1 3 12 12 C 1.46903 * 111.00125 * 175.15790 * 11 2 1 13 13 C 1.46901 * 111.00291 * 299.11512 * 11 2 1 14 14 C 1.52998 * 109.47376 * 163.31141 * 13 11 2 15 15 C 1.50701 * 115.55005 * 148.21731 * 14 13 11 16 16 H 1.07999 * 119.99785 * 114.79196 * 15 14 13 17 17 C 1.37874 * 120.00280 * 294.79696 * 15 14 13 18 18 N 1.31517 * 119.99804 * 350.77738 * 17 15 14 19 19 Si 1.86796 * 119.99969 * 170.77574 * 17 15 14 20 20 H 1.48504 * 109.47135 * 60.00132 * 19 17 15 21 21 H 1.48500 * 109.47148 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47504 * 299.99909 * 19 17 15 23 23 C 1.53002 * 117.49930 * 2.51326 * 14 13 11 24 24 C 1.53000 * 117.49769 * 293.89193 * 14 13 11 25 25 H 1.09003 * 109.47177 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47632 * 60.00170 * 1 2 3 27 27 H 1.09001 * 109.47043 * 299.99341 * 1 2 3 28 28 H 1.07997 * 119.98543 * 0.02843 * 5 4 2 29 29 H 1.08004 * 120.00873 * 180.25888 * 6 5 4 30 30 H 1.08002 * 120.01674 * 179.97438 * 9 7 6 31 31 H 1.08002 * 119.98518 * 180.02562 * 10 9 7 32 32 H 1.09001 * 109.46727 * 58.38645 * 12 11 2 33 33 H 1.08998 * 109.47174 * 178.37919 * 12 11 2 34 34 H 1.08998 * 109.47145 * 298.38637 * 12 11 2 35 35 H 1.09001 * 109.46803 * 283.31471 * 13 11 2 36 36 H 1.08995 * 109.46844 * 43.30506 * 13 11 2 37 37 H 0.97005 * 119.99466 * 185.00971 * 18 17 15 38 38 H 1.09000 * 117.49488 * 359.97438 * 23 14 13 39 39 H 1.08996 * 117.50230 * 145.01785 * 23 14 13 40 40 H 1.08996 * 117.49734 * 214.98081 * 24 14 13 41 41 H 1.09003 * 117.49767 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0323 -0.7103 -1.2306 5 6 2.0504 -2.0921 -1.2714 6 6 2.5063 -2.7445 -2.4011 7 6 2.9550 -2.0139 -3.4882 8 9 3.4053 -2.6507 -4.5913 9 6 2.9414 -0.6301 -3.4442 10 6 2.4796 0.0203 -2.3155 11 7 2.0197 -0.6924 1.1994 12 6 3.4836 -0.8131 1.1768 13 6 1.5661 -0.0142 2.4210 14 6 1.7247 -0.9562 3.6161 15 6 2.0340 -0.2901 4.9321 16 1 1.3204 -0.3363 5.7415 17 6 3.2278 0.3782 5.1028 18 7 4.1704 0.2838 4.1905 19 14 3.5062 1.4177 6.6296 20 1 3.3986 0.5612 7.8380 21 1 4.8595 2.0265 6.5739 22 1 2.4821 2.4913 6.6910 23 6 2.3467 -2.3296 3.3556 24 6 0.8495 -2.2108 3.6478 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 0.5137 0.8901 28 1 1.7042 -2.6617 -0.4217 29 1 2.5164 -3.8240 -2.4343 30 1 3.2916 -0.0591 -4.2914 31 1 2.4686 1.0997 -2.2811 32 1 3.9289 0.1797 1.1116 33 1 3.8218 -1.3037 2.0894 34 1 3.7861 -1.4045 0.3127 35 1 2.1651 0.8820 2.5827 36 1 0.5177 0.2640 2.3141 37 1 5.0362 0.6937 4.3436 38 1 2.6425 -2.5621 2.3326 39 1 2.9799 -2.7516 4.1360 40 1 0.4977 -2.5546 4.6204 41 1 0.1605 -2.3649 2.8173 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602756971.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:03 Heat of formation + Delta-G solvation = 6.722907 kcal Electronic energy + Delta-G solvation = -21961.399627 eV Core-core repulsion = 18756.445602 eV Total energy + Delta-G solvation = -3204.954025 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.85014 -40.73525 -39.09180 -36.67485 -33.97975 -32.57209 -31.99045 -30.32130 -28.41108 -27.09637 -25.35303 -24.05678 -23.46552 -22.67394 -21.23626 -20.27000 -18.60809 -18.07850 -17.41078 -16.84892 -16.58598 -16.53559 -16.01416 -15.92354 -15.38815 -14.97686 -14.66574 -14.37940 -14.32412 -13.95386 -13.81599 -13.26058 -13.17038 -13.03452 -12.89369 -12.82747 -12.61397 -12.28987 -12.24778 -12.20528 -11.84724 -11.70263 -11.60138 -10.98412 -10.83013 -10.29983 -9.98098 -9.72898 -9.44857 -9.03215 -8.03757 -6.12935 0.20318 0.35268 1.42733 1.44761 1.50815 2.45142 2.65621 3.10463 3.31150 3.33983 3.68283 3.78639 3.88482 4.02908 4.32149 4.37683 4.44898 4.49714 4.56422 4.65432 4.74577 4.83536 4.87535 4.93409 5.00072 5.06050 5.12340 5.15560 5.20412 5.21674 5.27475 5.34893 5.40723 5.48976 5.56652 5.66929 5.73553 5.83395 5.91701 5.98966 6.27915 6.48867 6.61798 6.93298 7.51658 9.00395 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028116 B = 0.004402 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.643773 B = 6359.406005 C = 6493.120112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.115 3.885 3 H 0.035 0.965 4 C -0.083 4.083 5 C -0.069 4.069 6 C -0.158 4.158 7 C 0.075 3.925 8 F -0.149 7.149 9 C -0.153 4.153 10 C -0.092 4.092 11 N -0.521 5.521 12 C 0.043 3.957 13 C 0.112 3.888 14 C 0.027 3.973 15 C -0.520 4.520 16 H 0.046 0.954 17 C 0.035 3.965 18 N -0.890 5.890 19 Si 0.941 3.059 20 H -0.278 1.278 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.166 4.166 24 C -0.185 4.185 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.057 0.943 28 H 0.137 0.863 29 H 0.146 0.854 30 H 0.152 0.848 31 H 0.144 0.856 32 H -0.004 1.004 33 H 0.078 0.922 34 H 0.059 0.941 35 H 0.010 0.990 36 H 0.066 0.934 37 H 0.257 0.743 38 H 0.096 0.904 39 H 0.041 0.959 40 H 0.062 0.938 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.083 -1.361 -14.376 15.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.006 3.994 3 H 0.053 0.947 4 C -0.083 4.083 5 C -0.087 4.087 6 C -0.176 4.176 7 C 0.056 3.944 8 F -0.128 7.128 9 C -0.171 4.171 10 C -0.110 4.110 11 N -0.245 5.245 12 C -0.105 4.105 13 C -0.015 4.015 14 C 0.026 3.974 15 C -0.558 4.558 16 H 0.064 0.936 17 C -0.166 4.166 18 N -0.526 5.526 19 Si 0.768 3.232 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.204 4.204 24 C -0.222 4.222 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.075 0.925 28 H 0.155 0.845 29 H 0.164 0.836 30 H 0.170 0.830 31 H 0.162 0.838 32 H 0.014 0.986 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.028 0.972 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.115 0.885 39 H 0.059 0.941 40 H 0.081 0.919 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.099 -1.729 -14.489 15.156 hybrid contribution 1.021 1.218 1.000 1.878 sum -3.078 -0.511 -13.489 13.845 Atomic orbital electron populations 1.21840 0.92358 1.02876 1.02115 1.20598 0.96560 0.94340 0.87873 0.94657 1.19908 0.99139 0.94205 0.95062 1.20978 0.96729 0.94024 0.96995 1.21320 1.02033 1.01489 0.92803 1.17910 1.01097 0.91302 0.84094 1.91463 1.87148 1.82482 1.51728 1.21257 1.03045 0.92298 1.00531 1.21078 0.97132 1.00933 0.91889 1.62142 1.10697 1.50559 1.01092 1.22315 0.87384 0.98587 1.02208 1.21433 0.97637 0.94658 0.87797 1.18907 0.99192 0.86089 0.93220 1.20779 1.02959 1.34030 0.98008 0.93588 1.25506 0.95898 0.96796 0.98445 1.70057 1.03408 1.44290 1.34873 0.85897 0.76967 0.79584 0.80800 1.20328 1.21212 1.19908 1.22721 0.93614 1.04466 0.99615 1.22809 0.93488 1.05855 1.00059 0.91718 0.90674 0.92460 0.84548 0.83606 0.83011 0.83780 0.98568 0.90367 0.92218 0.97176 0.91563 0.93374 0.88547 0.94065 0.91895 0.89263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.41 9.01 71.98 0.65 -2.76 16 2 C 0.11 3.37 2.28 44.17 0.10 3.47 16 3 H 0.04 1.10 7.99 -2.38 -0.02 1.08 16 4 C -0.08 -2.15 3.77 -19.86 -0.07 -2.22 16 5 C -0.07 -1.77 8.02 22.26 0.18 -1.59 16 6 C -0.16 -3.71 10.03 22.31 0.22 -3.49 16 7 C 0.08 1.78 7.30 22.37 0.16 1.95 16 8 F -0.15 -3.66 17.27 44.97 0.78 -2.88 16 9 C -0.15 -3.27 10.03 22.31 0.22 -3.05 16 10 C -0.09 -2.07 9.67 22.26 0.22 -1.86 16 11 N -0.52 -18.75 3.06 -901.48 -2.76 -21.50 16 12 C 0.04 1.69 7.89 127.69 1.01 2.70 16 13 C 0.11 4.80 4.83 86.30 0.42 5.22 16 14 C 0.03 1.27 1.66 -52.93 -0.09 1.18 16 15 C -0.52 -27.89 8.80 25.60 0.23 -27.66 16 16 H 0.05 2.50 7.83 -2.91 -0.02 2.47 16 17 C 0.04 1.87 5.16 84.65 0.44 2.31 16 18 N -0.89 -48.23 12.42 21.45 0.27 -47.96 16 19 Si 0.94 42.57 29.55 68.60 2.03 44.60 16 20 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 21 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 23 C -0.17 -7.53 7.98 30.60 0.24 -7.29 16 24 C -0.19 -7.79 9.94 30.59 0.30 -7.48 16 25 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.06 1.54 6.11 -2.39 -0.01 1.53 16 28 H 0.14 3.67 7.74 -2.91 -0.02 3.65 16 29 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 30 H 0.15 2.53 8.06 -2.91 -0.02 2.50 16 31 H 0.14 2.72 8.03 -2.91 -0.02 2.70 16 32 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 33 H 0.08 3.56 4.95 -2.39 -0.01 3.55 16 34 H 0.06 2.09 6.12 -2.39 -0.01 2.07 16 35 H 0.01 0.49 7.31 -2.39 -0.02 0.48 16 36 H 0.07 2.62 5.65 -2.39 -0.01 2.60 16 37 H 0.26 13.57 8.32 -92.70 -0.77 12.80 16 38 H 0.10 4.09 5.41 -2.39 -0.01 4.08 16 39 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 41 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 Total: -1.00 -55.83 330.38 5.55 -50.28 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 1.01 Total: 18.05 kcal Atomic # 6 Polarization: -44.81 SS G_CDS: 4.23 Total: -40.58 kcal Atomic # 7 Polarization: -66.98 SS G_CDS: -2.49 Total: -69.47 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.78 Total: -2.88 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -55.83 5.55 -50.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602756971.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.004 kcal (2) G-P(sol) polarization free energy of solvation -55.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds