Wall clock time and date at job start Mon Mar 30 2020 02:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46973 * 2 1 4 4 C 1.52996 * 109.46909 * 119.99649 * 2 1 3 5 5 C 1.50702 * 109.47159 * 294.99773 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48501 * 109.47188 * 90.00793 * 9 7 5 11 11 H 1.48501 * 109.47085 * 210.00372 * 9 7 5 12 12 H 1.48498 * 109.47634 * 330.00608 * 9 7 5 13 13 C 1.52996 * 109.46928 * 239.99437 * 2 1 3 14 14 N 1.46904 * 109.46858 * 65.00212 * 13 2 1 15 15 C 1.47159 * 110.99602 * 189.03757 * 14 13 2 16 16 C 1.52888 * 108.51362 * 165.32916 * 15 14 13 17 17 C 1.50721 * 109.96069 * 50.39475 * 16 15 14 18 18 C 1.38650 * 118.45902 * 163.33597 * 17 16 15 19 19 C 1.38257 * 120.32675 * 179.59054 * 18 17 16 20 20 F 1.35102 * 120.11241 * 179.97438 * 19 18 17 21 21 C 1.38482 * 119.77137 * 359.97438 * 19 18 17 22 22 C 1.37968 * 119.84627 * 0.07912 * 21 19 18 23 23 C 1.37854 * 121.66286 * 343.04515 * 17 16 15 24 24 C 1.46626 * 110.99942 * 66.04449 * 14 13 2 25 25 H 1.09001 * 109.46930 * 60.00301 * 1 2 3 26 26 H 1.08999 * 109.46998 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46896 * 300.00441 * 1 2 3 28 28 H 1.09004 * 109.47066 * 174.99977 * 4 2 1 29 29 H 1.08994 * 109.47405 * 54.99807 * 4 2 1 30 30 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 31 31 H 1.08997 * 109.47217 * 184.99878 * 13 2 1 32 32 H 1.08996 * 109.47400 * 304.99956 * 13 2 1 33 33 H 1.09004 * 109.63182 * 285.01771 * 15 14 13 34 34 H 1.08999 * 109.63596 * 45.61465 * 15 14 13 35 35 H 1.08999 * 109.38740 * 290.24866 * 16 15 14 36 36 H 1.08991 * 109.30779 * 170.49836 * 16 15 14 37 37 H 1.07992 * 119.83584 * 359.58646 * 18 17 16 38 38 H 1.08005 * 120.07796 * 180.02562 * 21 19 18 39 39 H 1.08005 * 119.79717 * 179.97438 * 22 21 19 40 40 H 1.09003 * 109.27533 * 296.22023 * 24 14 13 41 41 H 1.09002 * 109.27398 * 55.69792 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6414 0.0572 2.4766 6 1 1.0800 0.9744 2.3757 7 6 1.9879 -0.4047 3.7287 8 7 2.6711 -1.5217 3.8515 9 14 1.4871 0.5561 5.2502 10 1 0.1581 0.0862 5.7173 11 1 2.4921 0.3439 6.3227 12 1 1.4129 2.0021 4.9205 13 6 2.0400 -0.7214 -1.2491 14 7 1.6514 0.0373 -2.4456 15 6 1.9340 -0.7282 -3.6702 16 6 1.1908 -0.0731 -4.8346 17 6 1.4773 1.4064 -4.8606 18 6 1.1936 2.1141 -6.0187 19 6 1.4332 3.4743 -6.0820 20 9 1.1556 4.1595 -7.2128 21 6 1.9587 4.1319 -4.9823 22 6 2.2416 3.4263 -3.8309 23 6 2.0032 2.0610 -3.7673 24 6 2.3329 1.3348 -2.4894 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 3.1264 -0.7994 1.2056 29 1 1.6054 -1.7196 1.2953 30 1 2.9152 -1.8465 4.7324 31 1 3.1263 -0.7996 -1.2055 32 1 1.6054 -1.7199 -1.2950 33 1 3.0058 -0.7190 -3.8687 34 1 1.5901 -1.7553 -3.5477 35 1 0.1191 -0.2321 -4.7152 36 1 1.5211 -0.5221 -5.7712 37 1 0.7835 1.6003 -6.8754 38 1 2.1474 5.1944 -5.0262 39 1 2.6518 3.9399 -2.9739 40 1 2.0127 1.9383 -1.6400 41 1 3.4100 1.1776 -2.4326 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618887971.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:26 Heat of formation + Delta-G solvation = -37.835997 kcal Electronic energy + Delta-G solvation = -21129.515202 eV Core-core repulsion = 17922.628958 eV Total energy + Delta-G solvation = -3206.886244 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.00812 -40.16108 -37.52545 -34.90813 -33.00905 -32.08687 -30.86339 -29.37660 -26.91733 -26.07547 -24.36344 -23.43579 -22.59512 -22.05807 -19.76414 -18.88845 -17.32086 -16.75336 -16.34171 -16.05752 -15.71927 -15.13600 -14.77095 -14.44852 -14.35097 -14.07893 -13.78900 -13.37841 -13.27211 -12.84808 -12.64728 -12.27477 -12.21202 -11.95627 -11.44909 -11.38084 -11.24352 -11.11893 -10.83521 -10.75125 -10.72537 -10.28495 -10.25333 -9.63821 -9.14721 -9.04878 -8.96427 -8.59773 -8.33365 -8.07647 -5.98366 -3.99373 1.02796 1.08092 3.32677 3.39139 3.41380 3.42177 4.02608 4.09298 4.47647 4.50078 4.59776 4.75547 4.94155 5.06979 5.18584 5.28324 5.36839 5.38376 5.51652 5.62561 5.70526 5.71805 5.80876 5.84863 5.93798 5.96895 6.05457 6.13868 6.17496 6.37424 6.40547 6.54479 6.67816 6.77171 6.99716 7.10500 7.18837 7.29103 7.38581 7.68434 7.84142 8.01815 8.45878 9.07030 9.64118 11.13172 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029736 B = 0.003447 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.400217 B = 8122.168790 C = 8713.108436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.082 4.082 3 H 0.055 0.945 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.060 3.940 14 N -0.529 5.529 15 C 0.049 3.951 16 C -0.076 4.076 17 C -0.040 4.040 18 C -0.157 4.157 19 C 0.090 3.910 20 F -0.144 7.144 21 C -0.157 4.157 22 C -0.087 4.087 23 C -0.078 4.078 24 C 0.090 3.910 25 H 0.042 0.958 26 H 0.039 0.961 27 H 0.053 0.947 28 H 0.012 0.988 29 H 0.016 0.984 30 H 0.259 0.741 31 H 0.031 0.969 32 H 0.072 0.928 33 H 0.036 0.964 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.098 0.902 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.065 5.890 -19.502 20.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.100 4.100 3 H 0.074 0.926 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.067 4.067 14 N -0.253 5.253 15 C -0.079 4.079 16 C -0.113 4.113 17 C -0.040 4.040 18 C -0.175 4.175 19 C 0.071 3.929 20 F -0.123 7.123 21 C -0.176 4.176 22 C -0.105 4.105 23 C -0.079 4.079 24 C -0.038 4.038 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.030 0.970 29 H 0.034 0.966 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.091 0.909 33 H 0.054 0.946 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.150 0.850 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.116 0.884 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.508 5.870 -19.382 20.307 hybrid contribution 0.602 0.510 0.663 1.031 sum -0.906 6.380 -18.719 19.797 Atomic orbital electron populations 1.21585 0.95688 1.00558 1.00187 1.21231 0.96041 0.99028 0.93738 0.92634 1.19125 0.95882 0.95584 0.90442 1.21232 1.34621 1.08248 0.90950 0.92576 1.25018 0.95334 0.95090 0.99093 1.69966 1.39137 1.21232 1.23354 0.86637 0.78255 0.80422 0.82953 1.20716 1.21337 1.19905 1.22390 0.97785 0.97272 0.89278 1.62340 1.57504 1.03170 1.02243 1.22152 0.97879 0.97771 0.90123 1.20582 1.02026 0.90240 0.98472 1.19448 0.96534 0.96227 0.91805 1.21044 1.04365 0.92528 0.99613 1.17604 1.01846 0.90326 0.83136 1.91481 1.91729 1.79779 1.49311 1.21023 1.02853 1.00846 0.92852 1.20959 0.98668 0.93339 0.97557 1.19795 0.99021 0.93714 0.95354 1.21026 0.96554 0.91454 0.94757 0.93910 0.94173 0.92793 0.96957 0.96571 0.93105 0.95099 0.90920 0.94571 0.90045 0.89379 0.90413 0.85011 0.84884 0.84819 0.88436 0.93341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.34 8.89 37.16 0.33 -2.01 16 2 C -0.08 -1.61 2.25 -90.62 -0.20 -1.81 16 3 H 0.06 1.10 6.41 -51.93 -0.33 0.77 16 4 C 0.03 0.68 4.45 -27.88 -0.12 0.56 16 5 C -0.51 -14.13 8.41 -34.44 -0.29 -14.42 16 6 H 0.06 1.51 7.06 -52.49 -0.37 1.14 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.73 13.29 55.43 0.74 -26.00 16 9 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 13 C 0.06 0.98 4.33 -3.82 -0.02 0.97 16 14 N -0.53 -7.46 4.14 -236.20 -0.98 -8.44 16 15 C 0.05 0.57 5.57 -3.74 -0.02 0.55 16 16 C -0.08 -0.77 5.94 -27.93 -0.17 -0.93 16 17 C -0.04 -0.46 5.77 -104.60 -0.60 -1.06 16 18 C -0.16 -1.70 9.64 -39.42 -0.38 -2.08 16 19 C 0.09 1.03 7.30 -39.48 -0.29 0.74 16 20 F -0.14 -1.70 17.27 2.25 0.04 -1.66 16 21 C -0.16 -1.66 10.03 -39.59 -0.40 -2.06 16 22 C -0.09 -0.95 9.64 -39.49 -0.38 -1.33 16 23 C -0.08 -0.96 5.79 -104.61 -0.61 -1.56 16 24 C 0.09 1.20 4.90 -5.16 -0.03 1.17 16 25 H 0.04 0.74 7.75 -51.93 -0.40 0.34 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 1.10 6.95 -51.93 -0.36 0.74 16 28 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.03 0.52 8.07 -51.93 -0.42 0.10 16 32 H 0.07 1.19 7.91 -51.93 -0.41 0.78 16 33 H 0.04 0.42 8.05 -51.93 -0.42 0.00 16 34 H 0.08 0.88 7.87 -51.93 -0.41 0.47 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 39 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 40 H 0.10 1.38 6.52 -51.93 -0.34 1.04 16 41 H 0.05 0.64 8.08 -51.93 -0.42 0.22 16 LS Contribution 331.78 15.07 5.00 5.00 Total: -1.00 -29.68 331.78 -9.89 -39.57 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -6.40 Total: -3.16 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: -3.27 Total: -21.81 kcal Atomic # 7 Polarization: -34.20 SS G_CDS: -0.24 Total: -34.44 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.68 -9.89 -39.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618887971.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.739 kcal (2) G-P(sol) polarization free energy of solvation -29.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds