Wall clock time and date at job start Mon Mar 30 2020 02:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46973 * 2 1 4 4 C 1.52996 * 109.46909 * 119.99649 * 2 1 3 5 5 C 1.50702 * 109.47159 * 294.99773 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48501 * 109.47188 * 90.00793 * 9 7 5 11 11 H 1.48501 * 109.47085 * 210.00372 * 9 7 5 12 12 H 1.48498 * 109.47634 * 330.00608 * 9 7 5 13 13 C 1.52996 * 109.46928 * 239.99437 * 2 1 3 14 14 N 1.46904 * 109.46858 * 65.00212 * 13 2 1 15 15 C 1.47159 * 110.99602 * 189.03757 * 14 13 2 16 16 C 1.52888 * 108.51362 * 165.32916 * 15 14 13 17 17 C 1.50721 * 109.96069 * 50.39475 * 16 15 14 18 18 C 1.38650 * 118.45902 * 163.33597 * 17 16 15 19 19 C 1.38257 * 120.32675 * 179.59054 * 18 17 16 20 20 F 1.35102 * 120.11241 * 179.97438 * 19 18 17 21 21 C 1.38482 * 119.77137 * 359.97438 * 19 18 17 22 22 C 1.37968 * 119.84627 * 0.07912 * 21 19 18 23 23 C 1.37854 * 121.66286 * 343.04515 * 17 16 15 24 24 C 1.46626 * 110.99942 * 66.04449 * 14 13 2 25 25 H 1.09001 * 109.46930 * 60.00301 * 1 2 3 26 26 H 1.08999 * 109.46998 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46896 * 300.00441 * 1 2 3 28 28 H 1.09004 * 109.47066 * 174.99977 * 4 2 1 29 29 H 1.08994 * 109.47405 * 54.99807 * 4 2 1 30 30 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 31 31 H 1.08997 * 109.47217 * 184.99878 * 13 2 1 32 32 H 1.08996 * 109.47400 * 304.99956 * 13 2 1 33 33 H 1.09004 * 109.63182 * 285.01771 * 15 14 13 34 34 H 1.08999 * 109.63596 * 45.61465 * 15 14 13 35 35 H 1.08999 * 109.38740 * 290.24866 * 16 15 14 36 36 H 1.08991 * 109.30779 * 170.49836 * 16 15 14 37 37 H 1.07992 * 119.83584 * 359.58646 * 18 17 16 38 38 H 1.08005 * 120.07796 * 180.02562 * 21 19 18 39 39 H 1.08005 * 119.79717 * 179.97438 * 22 21 19 40 40 H 1.09003 * 109.27533 * 296.22023 * 24 14 13 41 41 H 1.09002 * 109.27398 * 55.69792 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6414 0.0572 2.4766 6 1 1.0800 0.9744 2.3757 7 6 1.9879 -0.4047 3.7287 8 7 2.6711 -1.5217 3.8515 9 14 1.4871 0.5561 5.2502 10 1 0.1581 0.0862 5.7173 11 1 2.4921 0.3439 6.3227 12 1 1.4129 2.0021 4.9205 13 6 2.0400 -0.7214 -1.2491 14 7 1.6514 0.0373 -2.4456 15 6 1.9340 -0.7282 -3.6702 16 6 1.1908 -0.0731 -4.8346 17 6 1.4773 1.4064 -4.8606 18 6 1.1936 2.1141 -6.0187 19 6 1.4332 3.4743 -6.0820 20 9 1.1556 4.1595 -7.2128 21 6 1.9587 4.1319 -4.9823 22 6 2.2416 3.4263 -3.8309 23 6 2.0032 2.0610 -3.7673 24 6 2.3329 1.3348 -2.4894 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 3.1264 -0.7994 1.2056 29 1 1.6054 -1.7196 1.2953 30 1 2.9152 -1.8465 4.7324 31 1 3.1263 -0.7996 -1.2055 32 1 1.6054 -1.7199 -1.2950 33 1 3.0058 -0.7190 -3.8687 34 1 1.5901 -1.7553 -3.5477 35 1 0.1191 -0.2321 -4.7152 36 1 1.5211 -0.5221 -5.7712 37 1 0.7835 1.6003 -6.8754 38 1 2.1474 5.1944 -5.0262 39 1 2.6518 3.9399 -2.9739 40 1 2.0127 1.9383 -1.6400 41 1 3.4100 1.1776 -2.4326 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000618887971.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:26 Heat of formation + Delta-G solvation = -52.805704 kcal Electronic energy + Delta-G solvation = -21130.164337 eV Core-core repulsion = 17922.628958 eV Total energy + Delta-G solvation = -3207.535379 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.88213 -41.08574 -38.69231 -36.41582 -34.46401 -33.52390 -31.95314 -30.31264 -28.81349 -27.37114 -25.69335 -24.67553 -23.63879 -23.28855 -20.79828 -20.39834 -18.51649 -18.16508 -17.53028 -17.16204 -16.62771 -16.55720 -16.02298 -15.64746 -15.60922 -15.34845 -14.87091 -14.40420 -14.33083 -14.24937 -13.94158 -13.76005 -13.32334 -13.22803 -12.91735 -12.79467 -12.71876 -12.47157 -12.22908 -12.20063 -12.12690 -11.85054 -11.61732 -11.35003 -11.03486 -10.84504 -10.51186 -9.87673 -9.51429 -9.17856 -8.15888 -6.24397 0.15449 0.26359 1.41523 1.42024 1.52879 2.43213 2.56128 2.93346 3.17881 3.25352 3.66875 3.71674 3.92004 4.04853 4.15187 4.25295 4.31475 4.41904 4.43939 4.54841 4.56361 4.62249 4.71369 4.89220 4.93239 4.94636 5.00030 5.01241 5.04620 5.15361 5.22385 5.30819 5.32469 5.47684 5.52622 5.55436 5.61974 5.83088 5.91345 5.92994 6.13432 6.16064 6.34343 6.91800 7.43785 8.96102 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029736 B = 0.003447 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.400217 B = 8122.168790 C = 8713.108436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.073 4.073 3 H 0.054 0.946 4 C 0.033 3.967 5 C -0.527 4.527 6 H 0.060 0.940 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.958 3.042 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.263 1.263 13 C 0.072 3.928 14 N -0.532 5.532 15 C 0.047 3.953 16 C -0.070 4.070 17 C -0.048 4.048 18 C -0.156 4.156 19 C 0.078 3.922 20 F -0.148 7.148 21 C -0.158 4.158 22 C -0.090 4.090 23 C -0.094 4.094 24 C 0.092 3.908 25 H 0.063 0.937 26 H 0.037 0.963 27 H 0.035 0.965 28 H -0.014 1.014 29 H -0.009 1.009 30 H 0.261 0.739 31 H 0.024 0.976 32 H 0.074 0.926 33 H 0.037 0.963 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.147 0.853 40 H 0.085 0.915 41 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.817 6.858 -20.653 21.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.091 4.091 3 H 0.072 0.928 4 C -0.004 4.004 5 C -0.565 4.565 6 H 0.078 0.922 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.783 3.217 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.188 1.188 13 C -0.056 4.056 14 N -0.256 5.256 15 C -0.081 4.081 16 C -0.107 4.107 17 C -0.048 4.048 18 C -0.175 4.175 19 C 0.059 3.941 20 F -0.127 7.127 21 C -0.176 4.176 22 C -0.109 4.109 23 C -0.094 4.094 24 C -0.036 4.036 25 H 0.082 0.918 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.004 0.996 29 H 0.009 0.991 30 H 0.070 0.930 31 H 0.042 0.958 32 H 0.093 0.907 33 H 0.056 0.944 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.122 0.878 37 H 0.169 0.831 38 H 0.169 0.831 39 H 0.165 0.835 40 H 0.104 0.896 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.267 6.850 -20.554 21.784 hybrid contribution 0.856 0.213 0.971 1.312 sum -1.411 7.062 -19.583 20.866 Atomic orbital electron populations 1.21466 0.94789 1.00423 1.00244 1.21029 0.96606 0.98506 0.92994 0.92780 1.19007 0.94085 0.94708 0.92632 1.21642 1.34302 1.08496 0.92081 0.92197 1.25920 0.95324 0.96073 1.02555 1.70098 1.40403 1.22918 1.24196 0.85546 0.77975 0.79353 0.78793 1.19984 1.21008 1.18766 1.22096 0.97142 0.97139 0.89177 1.62288 1.57591 1.03464 1.02252 1.22265 0.98369 0.98124 0.89349 1.20599 1.01974 0.89360 0.98812 1.19634 0.96448 0.97023 0.91745 1.21223 1.03869 0.92406 0.99966 1.17825 1.02236 0.90789 0.83261 1.91472 1.91807 1.79888 1.49515 1.21239 1.02200 1.01821 0.92380 1.21130 0.98481 0.93044 0.98221 1.19802 1.00279 0.94292 0.95069 1.20957 0.96306 0.91053 0.95256 0.91846 0.94376 0.94554 0.99556 0.99059 0.92990 0.95824 0.90738 0.94433 0.89128 0.89086 0.87836 0.83111 0.83082 0.83549 0.89637 0.93657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.20 8.89 71.98 0.64 -3.56 16 2 C -0.07 -2.88 2.25 -10.79 -0.02 -2.91 16 3 H 0.05 2.16 6.41 -2.39 -0.02 2.15 16 4 C 0.03 1.72 4.45 29.85 0.13 1.85 16 5 C -0.53 -29.50 8.41 25.60 0.22 -29.29 16 6 H 0.06 3.24 7.06 -2.91 -0.02 3.22 16 7 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 8 N -0.94 -56.81 13.29 21.45 0.28 -56.53 16 9 Si 0.96 44.25 29.54 68.60 2.03 46.27 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 13 C 0.07 2.36 4.33 86.30 0.37 2.74 16 14 N -0.53 -14.41 4.14 -901.19 -3.73 -18.14 16 15 C 0.05 0.99 5.57 86.22 0.48 1.47 16 16 C -0.07 -1.24 5.94 29.82 0.18 -1.06 16 17 C -0.05 -1.00 5.77 -19.85 -0.11 -1.12 16 18 C -0.16 -3.02 9.64 22.37 0.22 -2.80 16 19 C 0.08 1.63 7.30 22.33 0.16 1.79 16 20 F -0.15 -3.22 17.27 44.97 0.78 -2.45 16 21 C -0.16 -3.05 10.03 22.26 0.22 -2.82 16 22 C -0.09 -1.84 9.64 22.33 0.22 -1.63 16 23 C -0.09 -2.16 5.79 -19.85 -0.12 -2.28 16 24 C 0.09 2.39 4.90 85.59 0.42 2.81 16 25 H 0.06 2.11 7.75 -2.39 -0.02 2.09 16 26 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.04 1.46 6.95 -2.38 -0.02 1.45 16 28 H -0.01 -0.78 8.14 -2.38 -0.02 -0.80 16 29 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 30 H 0.26 14.97 8.31 -92.70 -0.77 14.20 16 31 H 0.02 0.80 8.07 -2.39 -0.02 0.78 16 32 H 0.07 2.40 7.91 -2.39 -0.02 2.39 16 33 H 0.04 0.80 8.05 -2.39 -0.02 0.78 16 34 H 0.09 1.76 7.87 -2.39 -0.02 1.74 16 35 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 38 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 39 H 0.15 2.50 8.06 -2.91 -0.02 2.47 16 40 H 0.09 2.39 6.52 -2.39 -0.02 2.37 16 41 H 0.05 1.19 8.08 -2.39 -0.02 1.17 16 Total: -1.00 -63.59 331.78 3.82 -59.77 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: 1.00 Total: 7.51 kcal Atomic # 6 Polarization: -39.90 SS G_CDS: 3.46 Total: -36.43 kcal Atomic # 7 Polarization: -71.23 SS G_CDS: -3.45 Total: -74.67 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.78 Total: -2.45 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Total: -63.59 3.82 -59.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618887971.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.964 kcal (2) G-P(sol) polarization free energy of solvation -63.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds