Wall clock time and date at job start Mon Mar 30 2020 02:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46911 * 2 1 4 4 C 1.52996 * 109.47238 * 240.00372 * 2 1 3 5 5 C 1.50702 * 109.47159 * 64.99689 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 C 1.52994 * 109.47216 * 119.99968 * 2 1 3 14 14 N 1.46895 * 109.47270 * 295.00157 * 13 2 1 15 15 C 1.47167 * 111.00255 * 169.99950 * 14 13 2 16 16 C 1.52900 * 108.50621 * 52.13594 * 15 14 13 17 17 C 1.50727 * 109.96491 * 50.38780 * 16 15 14 18 18 C 1.38700 * 118.46186 * 163.13497 * 17 16 15 19 19 C 1.37991 * 120.38353 * 179.86404 * 18 17 16 20 20 C 1.38485 * 119.80562 * 359.95343 * 19 18 17 21 21 F 1.35094 * 120.09538 * 180.02562 * 20 19 18 22 22 C 1.38243 * 119.80708 * 0.07554 * 20 19 18 23 23 C 1.37851 * 121.65187 * 343.07523 * 17 16 15 24 24 C 1.46632 * 111.00078 * 292.97452 * 14 13 2 25 25 H 1.09001 * 109.46849 * 59.99383 * 1 2 3 26 26 H 1.08994 * 109.47016 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46786 * 299.99917 * 1 2 3 28 28 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 29 29 H 1.08994 * 109.47405 * 184.99723 * 4 2 1 30 30 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 31 31 H 1.08998 * 109.46945 * 55.00387 * 13 2 1 32 32 H 1.09002 * 109.47045 * 174.99748 * 13 2 1 33 33 H 1.08991 * 109.63487 * 171.84164 * 15 14 13 34 34 H 1.09004 * 109.62531 * 292.43427 * 15 14 13 35 35 H 1.09000 * 109.38815 * 170.54571 * 16 15 14 36 36 H 1.08998 * 109.38589 * 290.34458 * 16 15 14 37 37 H 1.07999 * 119.80640 * 359.84132 * 18 17 16 38 38 H 1.07999 * 120.09993 * 179.97438 * 19 18 17 39 39 H 1.08007 * 119.81580 * 180.02562 * 22 20 19 40 40 H 1.08994 * 109.30137 * 49.47190 * 24 14 13 41 41 H 1.09004 * 109.30176 * 168.84590 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 1.6413 0.0572 -2.4766 6 1 1.0806 0.9747 -2.3757 7 6 1.9977 -0.3988 -3.7281 8 7 2.6809 -1.5159 -3.8509 9 14 1.5101 0.5700 -5.2489 10 1 0.7525 1.7809 -4.8427 11 1 2.7315 0.9761 -5.9897 12 1 0.6593 -0.2765 -6.1234 13 6 2.0400 -0.7212 1.2492 14 7 1.6514 0.0374 2.4456 15 6 1.9129 -0.7371 3.6693 16 6 3.3642 -1.2175 3.6387 17 6 4.2831 -0.0604 3.3410 18 6 5.6352 -0.2025 3.6157 19 6 6.5125 0.8306 3.3561 20 6 6.0402 2.0157 2.8173 21 9 6.8939 3.0307 2.5603 22 6 4.6925 2.1574 2.5441 23 6 3.8110 1.1195 2.8070 24 6 2.3504 1.3252 2.5013 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6054 -1.7197 -1.2952 29 1 3.1263 -0.7993 -1.2057 30 1 2.9313 -1.8368 -4.7314 31 1 1.6054 -1.7198 1.2950 32 1 3.1263 -0.7995 1.2055 33 1 1.7546 -0.1056 4.5433 34 1 1.2435 -1.5965 3.7087 35 1 3.6239 -1.6462 4.6066 36 1 3.4779 -1.9763 2.8646 37 1 6.0035 -1.1268 4.0356 38 1 7.5643 0.7152 3.5721 39 1 4.3240 3.0815 2.1235 40 1 2.2512 1.8308 1.5408 41 1 1.9031 1.9446 3.2788 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618888410.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:29 Heat of formation + Delta-G solvation = -34.903478 kcal Electronic energy + Delta-G solvation = -21700.188134 eV Core-core repulsion = 18493.429054 eV Total energy + Delta-G solvation = -3206.759081 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.88685 -40.47215 -37.41452 -34.78891 -32.75404 -32.13560 -30.70263 -28.98488 -27.06685 -26.27545 -24.35149 -23.30231 -22.58078 -22.26604 -19.80849 -18.65324 -17.18275 -16.67076 -16.36277 -15.74234 -15.58424 -15.16386 -14.79148 -14.70172 -14.36144 -13.96629 -13.66787 -13.36184 -13.17003 -12.68316 -12.52927 -12.32892 -12.18305 -11.55244 -11.53366 -11.37564 -11.32590 -11.08716 -10.85294 -10.82959 -10.65495 -10.26840 -10.21380 -9.60858 -9.12334 -8.95953 -8.89958 -8.47830 -8.31312 -8.11310 -5.96238 -3.97045 1.10110 1.15547 3.33100 3.40742 3.44671 3.48068 4.12298 4.21345 4.49819 4.58693 4.64555 4.83933 4.93252 5.08950 5.16436 5.32823 5.39882 5.42051 5.55022 5.65276 5.73693 5.80791 5.82614 5.95053 5.96870 6.06544 6.10331 6.17616 6.19983 6.39733 6.47454 6.57387 6.70014 6.85914 7.00755 7.11933 7.21837 7.31617 7.39803 7.71581 7.87102 8.04171 8.48290 9.09548 9.66350 11.15407 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016478 B = 0.004910 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.849748 B = 5700.753289 C = 6599.976347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.081 4.081 3 H 0.055 0.945 4 C 0.027 3.973 5 C -0.510 4.510 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.054 3.946 14 N -0.521 5.521 15 C 0.051 3.949 16 C -0.118 4.118 17 C -0.086 4.086 18 C -0.090 4.090 19 C -0.158 4.158 20 C 0.094 3.906 21 F -0.143 7.143 22 C -0.146 4.146 23 C -0.074 4.074 24 C 0.084 3.916 25 H 0.053 0.947 26 H 0.039 0.961 27 H 0.042 0.958 28 H 0.015 0.985 29 H 0.011 0.989 30 H 0.258 0.742 31 H 0.069 0.931 32 H 0.036 0.964 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.129 0.871 38 H 0.132 0.868 39 H 0.135 0.865 40 H 0.099 0.901 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.074 2.900 18.108 18.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.100 4.100 3 H 0.073 0.927 4 C -0.010 4.010 5 C -0.549 4.549 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.073 4.073 14 N -0.241 5.241 15 C -0.077 4.077 16 C -0.157 4.157 17 C -0.086 4.086 18 C -0.109 4.109 19 C -0.176 4.176 20 C 0.075 3.925 21 F -0.121 7.121 22 C -0.166 4.166 23 C -0.076 4.076 24 C -0.044 4.044 25 H 0.072 0.928 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.034 0.966 29 H 0.030 0.970 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.055 0.945 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.147 0.853 38 H 0.150 0.850 39 H 0.153 0.847 40 H 0.117 0.883 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.630 2.908 17.932 18.355 hybrid contribution 1.143 0.442 -1.018 1.593 sum 3.773 3.349 16.914 17.650 Atomic orbital electron populations 1.21594 0.95749 1.00533 1.00180 1.21231 0.95912 0.98988 0.93840 0.92686 1.19117 0.95861 0.95546 0.90481 1.21266 1.34347 1.08285 0.90969 0.92540 1.25020 0.95346 0.95105 0.99094 1.69979 1.39155 1.21329 1.23235 0.86591 0.78225 0.80183 0.83347 1.19734 1.21146 1.21080 1.22406 0.98245 0.97211 0.89423 1.62697 1.55124 1.03844 1.02481 1.22241 0.93581 0.98424 0.93442 1.21151 0.95920 0.96020 1.02572 1.19624 0.94297 0.95233 0.99493 1.20926 0.92353 0.98295 0.99283 1.21033 1.00880 0.92878 1.02851 1.17622 0.87723 0.85772 1.01408 1.91485 1.70055 1.58493 1.92097 1.21085 0.91465 1.00837 1.03190 1.20337 0.97901 0.92741 0.96621 1.21286 0.86231 0.93516 1.03383 0.92793 0.94199 0.93890 0.96627 0.97034 0.93188 0.91232 0.94543 0.90800 0.89986 0.90381 0.89809 0.85273 0.84997 0.84665 0.88303 0.89413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.35 8.89 37.16 0.33 -2.02 16 2 C -0.08 -1.63 2.29 -90.62 -0.21 -1.84 16 3 H 0.05 1.13 6.20 -51.92 -0.32 0.81 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.30 8.41 -34.44 -0.29 -14.59 16 6 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 9 Si 0.89 21.83 29.54 -169.99 -5.02 16.80 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 C 0.05 0.91 3.31 -3.83 -0.01 0.90 16 14 N -0.52 -7.24 4.47 -236.19 -1.06 -8.30 16 15 C 0.05 0.57 6.02 -3.73 -0.02 0.55 16 16 C -0.12 -1.29 5.17 -27.92 -0.14 -1.43 16 17 C -0.09 -1.08 5.06 -104.58 -0.53 -1.61 16 18 C -0.09 -1.04 9.65 -39.50 -0.38 -1.42 16 19 C -0.16 -1.89 10.03 -39.58 -0.40 -2.29 16 20 C 0.09 1.27 7.30 -39.49 -0.29 0.98 16 21 F -0.14 -2.00 17.27 2.25 0.04 -1.96 16 22 C -0.15 -1.96 9.63 -39.41 -0.38 -2.34 16 23 C -0.07 -0.99 5.19 -104.63 -0.54 -1.53 16 24 C 0.08 1.11 5.43 -5.15 -0.03 1.08 16 25 H 0.05 1.10 6.95 -51.93 -0.36 0.74 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.04 0.72 7.75 -51.93 -0.40 0.32 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 31 H 0.07 1.17 8.08 -51.93 -0.42 0.75 16 32 H 0.04 0.65 5.91 -51.93 -0.31 0.35 16 33 H 0.07 0.74 8.05 -51.93 -0.42 0.32 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 1.00 7.06 -51.93 -0.37 0.63 16 37 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 38 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.14 1.63 8.06 -52.48 -0.42 1.21 16 40 H 0.10 1.43 6.01 -51.93 -0.31 1.11 16 41 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 326.55 15.07 4.92 4.92 Total: -1.00 -30.40 326.55 -9.71 -40.11 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -6.22 Total: -1.67 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: -3.11 Total: -23.50 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: -0.32 Total: -34.70 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.40 -9.71 -40.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618888410.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.205 kcal (2) G-P(sol) polarization free energy of solvation -30.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds