Wall clock time and date at job start Mon Mar 30 2020 02:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46911 * 2 1 4 4 C 1.52996 * 109.47238 * 240.00372 * 2 1 3 5 5 C 1.50702 * 109.47159 * 64.99689 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 C 1.52994 * 109.47216 * 119.99968 * 2 1 3 14 14 N 1.46895 * 109.47270 * 295.00157 * 13 2 1 15 15 C 1.47167 * 111.00255 * 169.99950 * 14 13 2 16 16 C 1.52900 * 108.50621 * 52.13594 * 15 14 13 17 17 C 1.50727 * 109.96491 * 50.38780 * 16 15 14 18 18 C 1.38700 * 118.46186 * 163.13497 * 17 16 15 19 19 C 1.37991 * 120.38353 * 179.86404 * 18 17 16 20 20 C 1.38485 * 119.80562 * 359.95343 * 19 18 17 21 21 F 1.35094 * 120.09538 * 180.02562 * 20 19 18 22 22 C 1.38243 * 119.80708 * 0.07554 * 20 19 18 23 23 C 1.37851 * 121.65187 * 343.07523 * 17 16 15 24 24 C 1.46632 * 111.00078 * 292.97452 * 14 13 2 25 25 H 1.09001 * 109.46849 * 59.99383 * 1 2 3 26 26 H 1.08994 * 109.47016 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46786 * 299.99917 * 1 2 3 28 28 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 29 29 H 1.08994 * 109.47405 * 184.99723 * 4 2 1 30 30 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 31 31 H 1.08998 * 109.46945 * 55.00387 * 13 2 1 32 32 H 1.09002 * 109.47045 * 174.99748 * 13 2 1 33 33 H 1.08991 * 109.63487 * 171.84164 * 15 14 13 34 34 H 1.09004 * 109.62531 * 292.43427 * 15 14 13 35 35 H 1.09000 * 109.38815 * 170.54571 * 16 15 14 36 36 H 1.08998 * 109.38589 * 290.34458 * 16 15 14 37 37 H 1.07999 * 119.80640 * 359.84132 * 18 17 16 38 38 H 1.07999 * 120.09993 * 179.97438 * 19 18 17 39 39 H 1.08007 * 119.81580 * 180.02562 * 22 20 19 40 40 H 1.08994 * 109.30137 * 49.47190 * 24 14 13 41 41 H 1.09004 * 109.30176 * 168.84590 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 1.6413 0.0572 -2.4766 6 1 1.0806 0.9747 -2.3757 7 6 1.9977 -0.3988 -3.7281 8 7 2.6809 -1.5159 -3.8509 9 14 1.5101 0.5700 -5.2489 10 1 0.7525 1.7809 -4.8427 11 1 2.7315 0.9761 -5.9897 12 1 0.6593 -0.2765 -6.1234 13 6 2.0400 -0.7212 1.2492 14 7 1.6514 0.0374 2.4456 15 6 1.9129 -0.7371 3.6693 16 6 3.3642 -1.2175 3.6387 17 6 4.2831 -0.0604 3.3410 18 6 5.6352 -0.2025 3.6157 19 6 6.5125 0.8306 3.3561 20 6 6.0402 2.0157 2.8173 21 9 6.8939 3.0307 2.5603 22 6 4.6925 2.1574 2.5441 23 6 3.8110 1.1195 2.8070 24 6 2.3504 1.3252 2.5013 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6054 -1.7197 -1.2952 29 1 3.1263 -0.7993 -1.2057 30 1 2.9313 -1.8368 -4.7314 31 1 1.6054 -1.7198 1.2950 32 1 3.1263 -0.7995 1.2055 33 1 1.7546 -0.1056 4.5433 34 1 1.2435 -1.5965 3.7087 35 1 3.6239 -1.6462 4.6066 36 1 3.4779 -1.9763 2.8646 37 1 6.0035 -1.1268 4.0356 38 1 7.5643 0.7152 3.5721 39 1 4.3240 3.0815 2.1235 40 1 2.2512 1.8308 1.5408 41 1 1.9031 1.9446 3.2788 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000618888410.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:29 Heat of formation + Delta-G solvation = -51.263988 kcal Electronic energy + Delta-G solvation = -21700.897579 eV Core-core repulsion = 18493.429054 eV Total energy + Delta-G solvation = -3207.468525 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.93635 -41.48198 -38.57437 -36.41898 -34.29257 -33.55657 -31.83298 -29.96655 -28.94349 -27.68997 -25.68375 -24.72419 -23.63613 -23.46156 -21.18503 -19.97965 -18.51072 -18.16231 -17.65336 -16.92641 -16.66844 -16.53683 -16.06594 -16.04055 -15.72859 -15.03951 -14.78330 -14.55809 -14.35778 -14.30919 -14.04192 -13.50505 -13.31659 -13.23613 -12.91596 -12.76647 -12.60149 -12.48258 -12.38044 -12.19072 -12.09516 -11.95000 -11.68584 -11.33434 -11.02444 -10.87662 -10.53539 -9.89449 -9.45569 -9.23895 -8.17603 -6.26192 0.11868 0.20077 1.39000 1.39591 1.52445 2.41643 2.51774 3.03596 3.16120 3.22920 3.67217 3.70794 3.91740 4.01480 4.09959 4.18589 4.25546 4.37735 4.51142 4.53878 4.59205 4.66635 4.80916 4.89272 4.90219 4.94400 4.98336 5.02403 5.08025 5.11964 5.21021 5.24872 5.31293 5.48148 5.53281 5.54615 5.59656 5.82685 5.90024 5.91378 6.11839 6.19492 6.32808 6.90193 7.42059 8.94749 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016478 B = 0.004910 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.849748 B = 5700.753289 C = 6599.976347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.073 4.073 3 H 0.050 0.950 4 C 0.034 3.966 5 C -0.525 4.525 6 H 0.060 0.940 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.959 3.041 10 H -0.261 1.261 11 H -0.282 1.282 12 H -0.278 1.278 13 C 0.071 3.929 14 N -0.522 5.522 15 C 0.051 3.949 16 C -0.115 4.115 17 C -0.096 4.096 18 C -0.091 4.091 19 C -0.159 4.159 20 C 0.072 3.928 21 F -0.150 7.150 22 C -0.160 4.160 23 C -0.089 4.089 24 C 0.086 3.914 25 H 0.035 0.965 26 H 0.037 0.963 27 H 0.069 0.931 28 H -0.009 1.009 29 H -0.020 1.020 30 H 0.261 0.739 31 H 0.070 0.930 32 H 0.021 0.979 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.107 0.893 36 H 0.072 0.928 37 H 0.158 0.842 38 H 0.153 0.847 39 H 0.139 0.861 40 H 0.081 0.919 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.476 3.115 19.493 19.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.092 4.092 3 H 0.069 0.931 4 C -0.003 4.003 5 C -0.563 4.563 6 H 0.078 0.922 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.784 3.216 10 H -0.185 1.185 11 H -0.207 1.207 12 H -0.204 1.204 13 C -0.057 4.057 14 N -0.242 5.242 15 C -0.077 4.077 16 C -0.153 4.153 17 C -0.096 4.096 18 C -0.109 4.109 19 C -0.177 4.177 20 C 0.053 3.947 21 F -0.129 7.129 22 C -0.179 4.179 23 C -0.091 4.091 24 C -0.042 4.042 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.088 0.912 28 H 0.009 0.991 29 H -0.002 1.002 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.040 0.960 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.125 0.875 36 H 0.090 0.910 37 H 0.175 0.825 38 H 0.170 0.830 39 H 0.157 0.843 40 H 0.099 0.901 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.024 3.134 19.337 19.694 hybrid contribution 1.363 0.354 -1.404 1.988 sum 3.387 3.488 17.933 18.580 Atomic orbital electron populations 1.21482 0.94489 1.00504 1.00511 1.21042 0.96788 0.98287 0.93089 0.93136 1.18993 0.93698 0.94761 0.92873 1.21664 1.34079 1.08511 0.92082 0.92181 1.25938 0.95295 0.96117 1.02614 1.70110 1.40390 1.23044 1.24157 0.85490 0.78032 0.78995 0.79117 1.18528 1.20747 1.20379 1.22042 0.97053 0.97049 0.89517 1.62640 1.55127 1.04061 1.02400 1.22378 0.94032 0.98873 0.92418 1.21162 0.95369 0.95049 1.03694 1.19943 0.95255 0.95336 0.99063 1.21277 0.91883 0.99124 0.98578 1.21342 1.02167 0.92282 1.01952 1.17887 0.87841 0.86391 1.02578 1.91459 1.70219 1.58931 1.92315 1.21230 0.91781 1.01343 1.03594 1.20426 0.97936 0.93306 0.97384 1.21277 0.86518 0.93238 1.03200 0.94629 0.94366 0.91235 0.99059 1.00210 0.93002 0.91151 0.96042 0.88906 0.88841 0.87458 0.90993 0.82452 0.82953 0.84343 0.90113 0.87206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.21 8.89 71.98 0.64 -3.57 16 2 C -0.07 -2.98 2.29 -10.80 -0.02 -3.01 16 3 H 0.05 2.10 6.20 -2.38 -0.01 2.09 16 4 C 0.03 1.82 4.45 29.85 0.13 1.95 16 5 C -0.53 -29.99 8.41 25.60 0.22 -29.78 16 6 H 0.06 3.31 7.06 -2.91 -0.02 3.29 16 7 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 8 N -0.94 -57.86 13.29 21.45 0.28 -57.58 16 9 Si 0.96 45.04 29.54 68.60 2.03 47.06 16 10 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 C 0.07 2.37 3.31 86.30 0.29 2.66 16 14 N -0.52 -13.58 4.47 -901.16 -4.03 -17.61 16 15 C 0.05 0.98 6.02 86.22 0.52 1.50 16 16 C -0.11 -2.21 5.17 29.82 0.15 -2.05 16 17 C -0.10 -2.23 5.06 -19.84 -0.10 -2.33 16 18 C -0.09 -1.90 9.65 22.32 0.22 -1.69 16 19 C -0.16 -3.59 10.03 22.27 0.22 -3.37 16 20 C 0.07 1.93 7.30 22.33 0.16 2.10 16 21 F -0.15 -4.23 17.27 44.97 0.78 -3.46 16 22 C -0.16 -4.30 9.63 22.38 0.22 -4.08 16 23 C -0.09 -2.30 5.19 -19.87 -0.10 -2.40 16 24 C 0.09 2.16 5.43 85.59 0.46 2.62 16 25 H 0.03 1.43 6.95 -2.39 -0.02 1.42 16 26 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.07 2.22 7.75 -2.39 -0.02 2.20 16 28 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 29 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 30 H 0.26 15.17 8.31 -92.70 -0.77 14.40 16 31 H 0.07 2.32 8.08 -2.39 -0.02 2.30 16 32 H 0.02 0.78 5.91 -2.39 -0.01 0.76 16 33 H 0.09 1.51 8.05 -2.39 -0.02 1.49 16 34 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.07 1.59 7.06 -2.39 -0.02 1.57 16 37 H 0.16 2.33 8.06 -2.91 -0.02 2.30 16 38 H 0.15 2.71 8.06 -2.91 -0.02 2.68 16 39 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 40 H 0.08 2.32 6.01 -2.39 -0.01 2.30 16 41 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -66.37 326.55 3.53 -62.84 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: 1.01 Total: 9.88 kcal Atomic # 6 Polarization: -44.60 SS G_CDS: 3.46 Total: -41.14 kcal Atomic # 7 Polarization: -71.44 SS G_CDS: -3.74 Total: -75.19 kcal Atomic # 9 Polarization: -4.23 SS G_CDS: 0.78 Total: -3.46 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -66.37 3.53 -62.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618888410.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.572 kcal (2) G-P(sol) polarization free energy of solvation -66.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds