Wall clock time and date at job start Mon Mar 30 2020 02:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 C 1.50703 * 109.46967 * 294.99707 * 4 2 1 6 6 H 1.07996 * 119.99755 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00135 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99773 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99975 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47237 * 90.00441 * 9 7 5 11 11 H 1.48506 * 109.47247 * 210.00240 * 9 7 5 12 12 H 1.48500 * 109.47404 * 330.00197 * 9 7 5 13 13 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 14 14 N 1.46905 * 109.47028 * 64.99820 * 13 2 1 15 15 C 1.47155 * 111.00171 * 189.03710 * 14 13 2 16 16 C 1.52897 * 108.50546 * 165.31950 * 15 14 13 17 17 C 1.50731 * 109.95793 * 50.42169 * 16 15 14 18 18 C 1.38697 * 118.45660 * 163.29808 * 17 16 15 19 19 C 1.37984 * 120.38363 * 179.58402 * 18 17 16 20 20 C 1.38489 * 119.80208 * 0.02562 * 19 18 17 21 21 F 1.35099 * 120.09237 * 180.10337 * 20 19 18 22 22 C 1.38234 * 119.81240 * 0.08517 * 20 19 18 23 23 C 1.37845 * 121.65076 * 343.03190 * 17 16 15 24 24 C 1.46633 * 110.99459 * 66.04771 * 14 13 2 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 29 29 H 1.09000 * 109.46904 * 175.00284 * 4 2 1 30 30 H 0.97000 * 120.00259 * 179.97438 * 8 7 5 31 31 H 1.08994 * 109.47465 * 185.00197 * 13 2 1 32 32 H 1.08998 * 109.47565 * 305.00629 * 13 2 1 33 33 H 1.08997 * 109.63276 * 285.02470 * 15 14 13 34 34 H 1.09007 * 109.63178 * 45.62038 * 15 14 13 35 35 H 1.08993 * 109.38925 * 290.27162 * 16 15 14 36 36 H 1.09004 * 109.30376 * 170.51508 * 16 15 14 37 37 H 1.08005 * 119.80391 * 359.55230 * 18 17 16 38 38 H 1.07998 * 120.10075 * 180.02562 * 19 18 17 39 39 H 1.07997 * 119.81892 * 179.97438 * 22 20 19 40 40 H 1.08998 * 109.27423 * 296.21512 * 24 14 13 41 41 H 1.09005 * 109.27201 * 55.72724 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6414 0.0570 2.4766 6 1 1.0800 0.9741 2.3757 7 6 1.9923 -0.4022 3.7284 8 7 2.6755 -1.5193 3.8512 9 14 1.4976 0.5622 5.2497 10 1 0.1702 0.0938 5.7227 11 1 2.5065 0.3520 6.3189 12 1 1.4228 2.0075 4.9170 13 6 2.0400 -0.7213 -1.2492 14 7 1.6514 0.0373 -2.4456 15 6 1.9341 -0.7280 -3.6703 16 6 1.1905 -0.0728 -4.8346 17 6 1.4772 1.4067 -4.8607 18 6 1.1939 2.1145 -6.0193 19 6 1.4327 3.4720 -6.0840 20 6 1.9588 4.1313 -4.9856 21 9 2.1929 5.4607 -5.0418 22 6 2.2433 3.4255 -3.8316 23 6 2.0034 2.0610 -3.7674 24 6 2.3329 1.3349 -2.4893 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.6054 -1.7199 1.2952 29 1 3.1263 -0.7995 1.2056 30 1 2.9227 -1.8423 4.7318 31 1 3.1263 -0.7996 -1.2055 32 1 1.6054 -1.7198 -1.2952 33 1 3.0058 -0.7188 -3.8687 34 1 1.5901 -1.7552 -3.5479 35 1 0.1189 -0.2317 -4.7148 36 1 1.5205 -0.5219 -5.7713 37 1 0.7844 1.5999 -6.8761 38 1 1.2099 4.0187 -6.9883 39 1 2.6540 3.9395 -2.9752 40 1 2.0126 1.9383 -1.6400 41 1 3.4100 1.1776 -2.4330 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618888412.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:32 Heat of formation + Delta-G solvation = -37.640051 kcal Electronic energy + Delta-G solvation = -21171.558701 eV Core-core repulsion = 17964.680953 eV Total energy + Delta-G solvation = -3206.877747 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.97469 -40.16190 -37.53696 -34.88132 -32.88176 -32.23447 -31.04040 -29.04675 -26.98456 -26.23742 -24.34021 -23.30214 -22.57459 -22.14105 -19.74684 -18.90694 -17.36940 -16.75440 -16.25057 -15.93249 -15.66466 -15.25236 -14.87311 -14.44890 -14.30700 -14.11486 -13.80038 -13.28756 -13.24169 -12.81723 -12.57672 -12.45916 -12.18923 -11.91511 -11.47366 -11.43055 -11.23275 -11.00368 -10.83575 -10.76517 -10.74591 -10.28196 -10.24715 -9.64253 -9.14328 -9.07381 -8.96039 -8.54717 -8.32888 -8.10154 -5.97861 -3.98890 1.03675 1.07342 3.33215 3.39627 3.41211 3.42877 3.94000 4.20886 4.48214 4.51137 4.56815 4.77539 4.93922 5.00810 5.23513 5.31918 5.35229 5.38449 5.51186 5.61129 5.69765 5.73339 5.79213 5.81645 5.95779 5.99699 6.03576 6.13524 6.19357 6.36803 6.40297 6.54463 6.67996 6.77454 6.99827 7.10061 7.19052 7.28928 7.38104 7.68821 7.84399 8.02270 8.46362 9.07494 9.64662 11.13697 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023529 B = 0.003710 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.749650 B = 7546.328940 C = 8387.681416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.082 4.082 3 H 0.055 0.945 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.060 3.940 14 N -0.528 5.528 15 C 0.048 3.952 16 C -0.074 4.074 17 C -0.079 4.079 18 C -0.093 4.093 19 C -0.159 4.159 20 C 0.092 3.908 21 F -0.143 7.143 22 C -0.151 4.151 23 C -0.039 4.039 24 C 0.088 3.912 25 H 0.042 0.958 26 H 0.053 0.947 27 H 0.039 0.961 28 H 0.016 0.984 29 H 0.012 0.988 30 H 0.259 0.741 31 H 0.031 0.969 32 H 0.073 0.927 33 H 0.036 0.964 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.136 0.864 40 H 0.099 0.901 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.612 5.199 -20.647 21.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.074 0.926 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.067 4.067 14 N -0.252 5.252 15 C -0.080 4.080 16 C -0.111 4.111 17 C -0.079 4.079 18 C -0.111 4.111 19 C -0.178 4.178 20 C 0.073 3.927 21 F -0.122 7.122 22 C -0.170 4.170 23 C -0.040 4.040 24 C -0.040 4.040 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.034 0.966 29 H 0.031 0.969 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.091 0.909 33 H 0.054 0.946 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.148 0.852 38 H 0.150 0.850 39 H 0.154 0.846 40 H 0.117 0.883 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.033 5.206 -20.483 21.232 hybrid contribution 0.720 0.653 0.889 1.317 sum -1.313 5.859 -19.594 20.493 Atomic orbital electron populations 1.21583 0.95674 1.00561 1.00198 1.21234 0.96058 0.99031 0.93749 0.92649 1.19128 0.95887 0.95586 0.90437 1.21230 1.34557 1.08303 0.90968 0.92578 1.25011 0.95317 0.95093 0.99082 1.69962 1.39097 1.21272 1.23368 0.86640 0.78235 0.80455 0.82961 1.20710 1.21327 1.19905 1.22394 0.97803 0.97271 0.89254 1.62344 1.57444 1.03083 1.02315 1.22166 0.97900 0.97774 0.90177 1.20547 1.01840 0.90414 0.98287 1.19685 0.98865 0.96520 0.92826 1.20938 0.99270 0.93116 0.97825 1.21028 1.03061 0.95455 0.98207 1.17559 1.01954 0.77571 0.95610 1.91488 1.92516 1.31212 1.96938 1.21055 1.03733 0.94386 0.97807 1.19540 0.96704 0.92493 0.95257 1.21053 0.96712 0.91562 0.94680 0.93914 0.92783 0.94156 0.96555 0.96948 0.93105 0.95082 0.90873 0.94603 0.90085 0.89591 0.90548 0.85190 0.85017 0.84638 0.88302 0.93123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.35 8.89 37.16 0.33 -2.02 16 2 C -0.08 -1.63 2.25 -90.62 -0.20 -1.83 16 3 H 0.06 1.12 6.41 -51.93 -0.33 0.78 16 4 C 0.03 0.68 4.45 -27.88 -0.12 0.56 16 5 C -0.51 -14.21 8.41 -34.44 -0.29 -14.50 16 6 H 0.06 1.52 7.05 -52.49 -0.37 1.15 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 9 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.06 0.99 4.33 -3.82 -0.02 0.97 16 14 N -0.53 -7.50 4.14 -236.19 -0.98 -8.48 16 15 C 0.05 0.55 5.57 -3.74 -0.02 0.53 16 16 C -0.07 -0.72 5.94 -27.92 -0.17 -0.89 16 17 C -0.08 -0.88 5.77 -104.58 -0.60 -1.49 16 18 C -0.09 -0.90 9.65 -39.50 -0.38 -1.28 16 19 C -0.16 -1.61 10.03 -39.58 -0.40 -2.01 16 20 C 0.09 1.10 7.30 -39.49 -0.29 0.81 16 21 F -0.14 -1.78 17.27 2.25 0.04 -1.74 16 22 C -0.15 -1.83 9.63 -39.41 -0.38 -2.21 16 23 C -0.04 -0.49 5.79 -104.63 -0.61 -1.10 16 24 C 0.09 1.20 4.90 -5.15 -0.03 1.17 16 25 H 0.04 0.74 7.75 -51.93 -0.40 0.34 16 26 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.03 0.52 8.07 -51.93 -0.42 0.10 16 32 H 0.07 1.20 7.91 -51.93 -0.41 0.79 16 33 H 0.04 0.41 8.05 -51.93 -0.42 -0.01 16 34 H 0.08 0.87 7.87 -51.92 -0.41 0.46 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 38 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 39 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 40 H 0.10 1.44 6.52 -51.93 -0.34 1.10 16 41 H 0.05 0.69 8.08 -51.93 -0.42 0.27 16 LS Contribution 331.78 15.07 5.00 5.00 Total: -1.00 -29.86 331.78 -9.89 -39.75 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -6.40 Total: -3.25 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: -3.27 Total: -21.81 kcal Atomic # 7 Polarization: -34.33 SS G_CDS: -0.24 Total: -34.57 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.86 -9.89 -39.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618888412.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.106 kcal (2) G-P(sol) polarization free energy of solvation -29.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds