Wall clock time and date at job start Mon Mar 30 2020 02:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47486 * 2 1 4 4 N 1.46512 * 109.46724 * 119.99399 * 2 1 3 5 5 C 1.34769 * 119.99934 * 274.99737 * 4 2 1 6 6 O 1.21285 * 120.00184 * 0.02562 * 5 4 2 7 7 C 1.50703 * 119.99927 * 180.02562 * 5 4 2 8 8 H 1.09002 * 109.47152 * 319.99914 * 7 5 4 9 9 N 1.46896 * 109.46997 * 199.99852 * 7 5 4 10 10 C 1.53000 * 109.46912 * 80.00142 * 7 5 4 11 11 C 1.53006 * 109.46846 * 185.00257 * 10 7 5 12 12 C 1.50701 * 109.47024 * 179.97438 * 11 10 7 13 13 H 1.08004 * 119.99776 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99939 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99968 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99808 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47109 * 90.00453 * 16 14 12 18 18 H 1.48498 * 109.47260 * 209.99830 * 16 14 12 19 19 H 1.48494 * 109.47293 * 330.00082 * 16 14 12 20 20 C 1.50698 * 109.47032 * 239.99128 * 2 1 3 21 21 C 1.38227 * 119.61588 * 84.73423 * 20 2 1 22 22 C 1.38633 * 119.15979 * 179.75522 * 21 20 2 23 23 C 1.38679 * 118.41718 * 0.50607 * 22 21 20 24 24 C 1.38174 * 119.16369 * 359.73274 * 23 22 21 25 25 N 1.31858 * 119.61829 * 265.00724 * 20 2 1 26 26 H 1.09004 * 109.46619 * 60.00222 * 1 2 3 27 27 H 1.09000 * 109.47280 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47131 * 300.00709 * 1 2 3 29 29 H 0.96997 * 119.99649 * 94.99950 * 4 2 1 30 30 H 1.00900 * 111.00550 * 300.00040 * 9 7 5 31 31 H 1.00896 * 111.00310 * 63.95626 * 9 7 5 32 32 H 1.09002 * 109.47069 * 304.99691 * 10 7 5 33 33 H 1.08991 * 109.47625 * 65.00010 * 10 7 5 34 34 H 1.09002 * 109.46824 * 299.99583 * 11 10 7 35 35 H 1.09001 * 109.47241 * 59.99481 * 11 10 7 36 36 H 0.96998 * 120.00041 * 179.97438 * 15 14 12 37 37 H 1.07993 * 120.42164 * 359.97438 * 21 20 2 38 38 H 1.07998 * 120.78933 * 180.21326 * 22 21 20 39 39 H 1.08003 * 120.41483 * 179.71083 * 23 22 21 40 40 H 1.08009 * 119.61638 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1964 5 6 2.1470 -0.0181 2.3572 6 8 1.8582 1.1586 2.4116 7 6 2.6498 -0.7283 3.5876 8 1 2.2155 -1.7270 3.6337 9 7 2.2612 0.0304 4.7840 10 6 4.1746 -0.8375 3.5260 11 6 4.6748 -1.6663 4.7110 12 6 6.1767 -1.7745 4.6500 13 1 6.7201 -1.2993 3.8467 14 6 6.8570 -2.4792 5.6203 15 7 6.1953 -3.0566 6.5993 16 14 8.7187 -2.6127 5.5451 17 1 9.3266 -1.4821 6.2918 18 1 9.1480 -3.8966 6.1554 19 1 9.1616 -2.5654 4.1285 20 6 2.0323 -0.7106 -1.2303 21 6 2.1560 -0.0149 -2.4183 22 6 2.6239 -0.6766 -3.5431 23 6 2.9412 -2.0221 -3.4329 24 6 2.7869 -2.6526 -2.2131 25 7 2.3436 -1.9901 -1.1625 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5140 0.8900 29 1 2.2489 -1.6317 1.1529 30 1 2.6517 0.9606 4.7651 31 1 1.2575 0.0616 4.8822 32 1 4.4668 -1.3223 2.5945 33 1 4.6125 0.1596 3.5695 34 1 4.3826 -1.1815 5.6425 35 1 4.2369 -2.6636 4.6675 36 1 6.6739 -3.5527 7.2817 37 1 1.8949 1.0318 -2.4688 38 1 2.7341 -0.1578 -4.4839 39 1 3.3040 -2.5703 -4.2899 40 1 3.0315 -3.7004 -2.1192 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691612181.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:15 Heat of formation + Delta-G solvation = -16.831384 kcal Electronic energy + Delta-G solvation = -20982.235655 eV Core-core repulsion = 17796.180201 eV Total energy + Delta-G solvation = -3186.055454 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.71864 -39.53248 -35.93430 -34.96941 -32.75392 -32.69521 -31.94787 -30.04955 -29.67347 -26.38059 -24.78821 -23.91717 -23.40898 -21.42768 -20.38645 -19.73877 -17.72285 -16.89791 -16.64858 -16.12863 -15.87720 -15.39571 -15.23883 -14.77746 -14.40086 -14.22620 -13.98198 -13.69555 -13.42821 -13.29611 -12.81972 -12.46195 -12.25551 -12.08958 -11.94955 -11.48472 -11.38139 -10.86437 -10.61742 -10.50032 -10.18814 -10.06409 -9.78776 -9.72525 -9.36707 -9.31172 -8.97290 -8.92802 -8.29889 -8.14676 -5.89661 -3.91443 0.78794 0.98297 2.84711 3.28832 3.37581 3.43544 3.46751 3.52226 3.88276 4.43556 4.53643 4.56811 4.77775 4.84203 4.93908 5.03319 5.08810 5.21451 5.23488 5.40963 5.45835 5.51170 5.61980 5.67649 5.80884 5.86845 5.91669 5.99390 6.37920 6.50278 6.56419 6.72499 7.15735 7.46557 7.69395 7.74183 7.81475 7.86875 8.01768 8.18253 8.41454 8.53505 9.16531 9.71330 11.21328 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016450 B = 0.004067 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.670724 B = 6883.096318 C = 8156.417925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.192 3.808 3 H 0.101 0.899 4 N -0.717 5.717 5 C 0.484 3.516 6 O -0.559 6.559 7 C 0.079 3.921 8 H 0.098 0.902 9 N -0.807 5.807 10 C -0.095 4.095 11 C 0.031 3.969 12 C -0.521 4.521 13 H 0.051 0.949 14 C 0.058 3.942 15 N -0.893 5.893 16 Si 0.888 3.112 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.125 3.875 21 C -0.165 4.165 22 C -0.072 4.072 23 C -0.177 4.177 24 C 0.108 3.892 25 N -0.478 5.478 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.413 0.587 30 H 0.347 0.653 31 H 0.333 0.667 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.035 0.965 35 H 0.013 0.987 36 H 0.259 0.741 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.613 3.437 -20.527 23.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.085 3.915 3 H 0.119 0.881 4 N -0.370 5.370 5 C 0.270 3.730 6 O -0.437 6.437 7 C -0.036 4.036 8 H 0.116 0.884 9 N -0.334 5.334 10 C -0.133 4.133 11 C -0.006 4.006 12 C -0.559 4.559 13 H 0.069 0.931 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.716 3.284 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.201 1.201 20 C -0.013 4.013 21 C -0.185 4.185 22 C -0.098 4.098 23 C -0.197 4.197 24 C -0.049 4.049 25 N -0.188 5.188 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.250 0.750 30 H 0.161 0.839 31 H 0.145 0.855 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.032 0.968 36 H 0.069 0.931 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -11.480 3.166 -19.096 22.504 hybrid contribution 0.825 0.481 -1.749 1.993 sum -10.654 3.647 -20.845 23.692 Atomic orbital electron populations 1.22137 0.93817 1.02679 1.02770 1.19717 0.94328 0.96192 0.81256 0.88132 1.46143 1.67129 1.15130 1.08630 1.22769 0.76167 0.87962 0.86073 1.90627 1.51242 1.16357 1.85480 1.21816 0.99854 0.97479 0.84495 0.88403 1.59003 1.15247 1.22213 1.36966 1.21647 0.88371 1.01488 1.01802 1.19017 0.94728 0.94171 0.92667 1.21287 0.92572 1.32417 1.09659 0.93052 1.24984 0.98026 0.95774 0.95531 1.69977 1.35224 1.34780 1.13242 0.86658 0.86289 0.77350 0.78054 1.20741 1.21294 1.20054 1.21331 0.94899 0.90449 0.94617 1.21864 1.01717 1.01598 0.93343 1.21578 0.95030 0.94512 0.98638 1.22173 1.02178 0.95750 0.99629 1.22802 0.93907 1.00232 0.87970 1.67288 1.10948 1.08325 1.32198 0.91697 0.92021 0.91169 0.74961 0.83893 0.85511 0.92839 0.92954 0.94675 0.96836 0.93140 0.84590 0.84680 0.84665 0.82332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.47 37.16 0.35 -1.27 16 2 C 0.19 2.31 2.82 -69.08 -0.19 2.12 16 3 H 0.10 1.29 7.55 -51.93 -0.39 0.90 16 4 N -0.72 -10.04 5.05 -54.92 -0.28 -10.32 16 5 C 0.48 7.95 7.03 -10.99 -0.08 7.87 16 6 O -0.56 -10.31 15.91 5.55 0.09 -10.22 16 7 C 0.08 1.39 3.15 -68.87 -0.22 1.18 16 8 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 9 N -0.81 -14.02 8.44 -5.65 -0.05 -14.07 16 10 C -0.09 -2.00 4.78 -26.73 -0.13 -2.12 16 11 C 0.03 0.82 4.86 -27.88 -0.14 0.68 16 12 C -0.52 -15.04 9.11 -34.44 -0.31 -15.36 16 13 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 14 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 15 N -0.89 -27.30 13.29 55.43 0.74 -26.56 16 16 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 17 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 C 0.13 1.41 5.89 -82.59 -0.49 0.92 16 21 C -0.17 -1.49 9.77 -39.44 -0.39 -1.87 16 22 C -0.07 -0.54 10.18 -39.27 -0.40 -0.94 16 23 C -0.18 -1.36 10.11 -39.44 -0.40 -1.76 16 24 C 0.11 1.02 11.18 -17.55 -0.20 0.83 16 25 N -0.48 -5.67 9.04 -9.47 -0.09 -5.75 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 29 H 0.41 5.68 7.63 -40.82 -0.31 5.37 16 30 H 0.35 6.10 8.58 -39.29 -0.34 5.76 16 31 H 0.33 5.02 9.06 -39.29 -0.36 4.66 16 32 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.03 0.99 7.75 -51.93 -0.40 0.59 16 35 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16 39 H 0.14 0.68 8.06 -52.48 -0.42 0.26 16 40 H 0.16 1.14 8.06 -52.48 -0.42 0.72 16 LS Contribution 342.24 15.07 5.16 5.16 Total: -1.00 -33.70 342.24 -8.12 -41.82 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -5.99 Total: 11.03 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -2.68 Total: -8.13 kcal Atomic # 7 Polarization: -57.03 SS G_CDS: 0.33 Total: -56.71 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.09 Total: -10.22 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.70 -8.12 -41.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691612181.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.992 kcal (2) G-P(sol) polarization free energy of solvation -33.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds