Wall clock time and date at job start Mon Mar 30 2020 02:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47486 * 2 1 4 4 N 1.46512 * 109.46724 * 119.99399 * 2 1 3 5 5 C 1.34769 * 119.99934 * 274.99737 * 4 2 1 6 6 O 1.21285 * 120.00184 * 0.02562 * 5 4 2 7 7 C 1.50703 * 119.99927 * 180.02562 * 5 4 2 8 8 H 1.09002 * 109.47152 * 319.99914 * 7 5 4 9 9 N 1.46896 * 109.46997 * 199.99852 * 7 5 4 10 10 C 1.53000 * 109.46912 * 80.00142 * 7 5 4 11 11 C 1.53006 * 109.46846 * 185.00257 * 10 7 5 12 12 C 1.50701 * 109.47024 * 179.97438 * 11 10 7 13 13 H 1.08004 * 119.99776 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99939 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99968 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99808 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47109 * 90.00453 * 16 14 12 18 18 H 1.48498 * 109.47260 * 209.99830 * 16 14 12 19 19 H 1.48494 * 109.47293 * 330.00082 * 16 14 12 20 20 C 1.50698 * 109.47032 * 239.99128 * 2 1 3 21 21 C 1.38227 * 119.61588 * 84.73423 * 20 2 1 22 22 C 1.38633 * 119.15979 * 179.75522 * 21 20 2 23 23 C 1.38679 * 118.41718 * 0.50607 * 22 21 20 24 24 C 1.38174 * 119.16369 * 359.73274 * 23 22 21 25 25 N 1.31858 * 119.61829 * 265.00724 * 20 2 1 26 26 H 1.09004 * 109.46619 * 60.00222 * 1 2 3 27 27 H 1.09000 * 109.47280 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47131 * 300.00709 * 1 2 3 29 29 H 0.96997 * 119.99649 * 94.99950 * 4 2 1 30 30 H 1.00900 * 111.00550 * 300.00040 * 9 7 5 31 31 H 1.00896 * 111.00310 * 63.95626 * 9 7 5 32 32 H 1.09002 * 109.47069 * 304.99691 * 10 7 5 33 33 H 1.08991 * 109.47625 * 65.00010 * 10 7 5 34 34 H 1.09002 * 109.46824 * 299.99583 * 11 10 7 35 35 H 1.09001 * 109.47241 * 59.99481 * 11 10 7 36 36 H 0.96998 * 120.00041 * 179.97438 * 15 14 12 37 37 H 1.07993 * 120.42164 * 359.97438 * 21 20 2 38 38 H 1.07998 * 120.78933 * 180.21326 * 22 21 20 39 39 H 1.08003 * 120.41483 * 179.71083 * 23 22 21 40 40 H 1.08009 * 119.61638 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1964 5 6 2.1470 -0.0181 2.3572 6 8 1.8582 1.1586 2.4116 7 6 2.6498 -0.7283 3.5876 8 1 2.2155 -1.7270 3.6337 9 7 2.2612 0.0304 4.7840 10 6 4.1746 -0.8375 3.5260 11 6 4.6748 -1.6663 4.7110 12 6 6.1767 -1.7745 4.6500 13 1 6.7201 -1.2993 3.8467 14 6 6.8570 -2.4792 5.6203 15 7 6.1953 -3.0566 6.5993 16 14 8.7187 -2.6127 5.5451 17 1 9.3266 -1.4821 6.2918 18 1 9.1480 -3.8966 6.1554 19 1 9.1616 -2.5654 4.1285 20 6 2.0323 -0.7106 -1.2303 21 6 2.1560 -0.0149 -2.4183 22 6 2.6239 -0.6766 -3.5431 23 6 2.9412 -2.0221 -3.4329 24 6 2.7869 -2.6526 -2.2131 25 7 2.3436 -1.9901 -1.1625 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5140 0.8900 29 1 2.2489 -1.6317 1.1529 30 1 2.6517 0.9606 4.7651 31 1 1.2575 0.0616 4.8822 32 1 4.4668 -1.3223 2.5945 33 1 4.6125 0.1596 3.5695 34 1 4.3826 -1.1815 5.6425 35 1 4.2369 -2.6636 4.6675 36 1 6.6739 -3.5527 7.2817 37 1 1.8949 1.0318 -2.4688 38 1 2.7341 -0.1578 -4.4839 39 1 3.3040 -2.5703 -4.2899 40 1 3.0315 -3.7004 -2.1192 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691612181.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:15 Heat of formation + Delta-G solvation = -41.349169 kcal Electronic energy + Delta-G solvation = -20983.298826 eV Core-core repulsion = 17796.180201 eV Total energy + Delta-G solvation = -3187.118625 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.57518 -40.69370 -37.15281 -36.45539 -34.80882 -33.36187 -32.91025 -31.92400 -30.52086 -28.11851 -25.99910 -24.97593 -24.43978 -22.68384 -21.82680 -21.12497 -18.93439 -18.22235 -17.92480 -17.39717 -17.00640 -16.57599 -16.43748 -16.14692 -15.82241 -15.33371 -15.22828 -14.87426 -14.46645 -14.28950 -14.02298 -13.82758 -13.69257 -13.41817 -13.22361 -12.84554 -12.80531 -12.51596 -12.26816 -12.20369 -11.76629 -11.64829 -11.25663 -10.99563 -10.83667 -10.52647 -10.48439 -10.24515 -9.88755 -9.61320 -8.13629 -6.24133 0.11436 0.35246 1.41191 1.42868 1.50641 1.53896 2.15000 2.44760 2.82263 3.11126 3.19101 3.58250 3.74170 3.85000 4.04764 4.08748 4.15446 4.19186 4.26238 4.28428 4.32212 4.52297 4.72246 4.77216 4.78239 4.84002 4.93922 5.10935 5.17397 5.24195 5.26272 5.43995 5.56574 5.76567 5.83918 5.98336 6.10158 6.30543 6.47682 6.55793 6.93882 6.97358 7.15809 7.43770 8.97746 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016450 B = 0.004067 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.670724 B = 6883.096318 C = 8156.417925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.189 3.811 3 H 0.092 0.908 4 N -0.707 5.707 5 C 0.491 3.509 6 O -0.579 6.579 7 C 0.086 3.914 8 H 0.106 0.894 9 N -0.817 5.817 10 C -0.080 4.080 11 C 0.040 3.960 12 C -0.545 4.545 13 H 0.054 0.946 14 C 0.002 3.998 15 N -0.929 5.929 16 Si 0.960 3.040 17 H -0.275 1.275 18 H -0.280 1.280 19 H -0.265 1.265 20 C 0.102 3.898 21 C -0.169 4.169 22 C -0.072 4.072 23 C -0.170 4.170 24 C 0.087 3.913 25 N -0.509 5.509 26 H 0.087 0.913 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.415 0.585 30 H 0.346 0.654 31 H 0.347 0.653 32 H 0.059 0.941 33 H 0.043 0.957 34 H 0.008 0.992 35 H -0.007 1.007 36 H 0.262 0.738 37 H 0.154 0.846 38 H 0.167 0.833 39 H 0.165 0.835 40 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.051 3.545 -22.969 25.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.084 3.916 3 H 0.110 0.890 4 N -0.359 5.359 5 C 0.276 3.724 6 O -0.459 6.459 7 C -0.030 4.030 8 H 0.124 0.876 9 N -0.346 5.346 10 C -0.118 4.118 11 C 0.003 3.997 12 C -0.583 4.583 13 H 0.072 0.928 14 C -0.195 4.195 15 N -0.569 5.569 16 Si 0.785 3.215 17 H -0.200 1.200 18 H -0.206 1.206 19 H -0.189 1.189 20 C -0.036 4.036 21 C -0.189 4.189 22 C -0.097 4.097 23 C -0.190 4.190 24 C -0.069 4.069 25 N -0.219 5.219 26 H 0.106 0.894 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.252 0.748 30 H 0.159 0.841 31 H 0.160 0.840 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.026 0.974 35 H 0.011 0.989 36 H 0.071 0.929 37 H 0.172 0.828 38 H 0.185 0.815 39 H 0.183 0.817 40 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -10.937 3.267 -21.569 24.403 hybrid contribution 0.630 0.408 -1.054 1.294 sum -10.307 3.675 -22.624 25.131 Atomic orbital electron populations 1.22056 0.92619 1.02648 1.03185 1.19837 0.95280 0.95617 0.80896 0.89037 1.46098 1.66009 1.15147 1.08676 1.22315 0.76322 0.87462 0.86287 1.90617 1.52496 1.17057 1.85779 1.21588 0.97508 0.98274 0.85589 0.87625 1.58966 1.16442 1.22098 1.37060 1.21360 0.90864 0.99864 0.99750 1.18822 0.93831 0.93519 0.93530 1.21716 0.94045 1.32601 1.09926 0.92819 1.25902 1.03407 0.95227 0.95008 1.70107 1.37419 1.35430 1.13993 0.85523 0.79775 0.77598 0.78579 1.20026 1.20576 1.18938 1.21236 0.96729 0.90735 0.94907 1.22114 1.01291 1.02490 0.92986 1.22004 0.93767 0.94604 0.99367 1.22533 1.00671 0.96040 0.99749 1.23191 0.94244 1.01100 0.88388 1.67192 1.12098 1.08884 1.33730 0.89384 0.92201 0.92577 0.74787 0.84062 0.83968 0.92202 0.93819 0.97391 0.98888 0.92881 0.82841 0.81528 0.81738 0.80936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.47 71.98 0.68 -2.26 16 2 C 0.19 4.48 2.82 44.24 0.12 4.61 16 3 H 0.09 2.32 7.55 -2.39 -0.02 2.30 16 4 N -0.71 -19.74 5.05 -446.07 -2.25 -21.99 16 5 C 0.49 16.12 7.03 87.66 0.62 16.74 16 6 O -0.58 -21.38 15.91 -3.05 -0.05 -21.43 16 7 C 0.09 3.06 3.15 44.17 0.14 3.20 16 8 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 9 N -0.82 -28.79 8.44 -171.80 -1.45 -30.24 16 10 C -0.08 -3.42 4.78 30.60 0.15 -3.27 16 11 C 0.04 2.16 4.86 29.85 0.15 2.31 16 12 C -0.54 -31.83 9.11 25.60 0.23 -31.60 16 13 H 0.05 3.04 7.74 -2.91 -0.02 3.01 16 14 C 0.00 0.14 5.46 84.65 0.46 0.60 16 15 N -0.93 -57.60 13.29 21.45 0.28 -57.31 16 16 Si 0.96 45.22 29.54 68.60 2.03 47.24 16 17 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 18 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 19 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 20 C 0.10 2.19 5.89 42.55 0.25 2.44 16 21 C -0.17 -2.69 9.77 22.36 0.22 -2.47 16 22 C -0.07 -0.87 10.18 22.47 0.23 -0.64 16 23 C -0.17 -2.14 10.11 22.36 0.23 -1.92 16 24 C 0.09 1.53 11.18 84.67 0.95 2.48 16 25 N -0.51 -11.70 9.04 -183.88 -1.66 -13.36 16 26 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 29 H 0.41 11.42 7.63 -92.71 -0.71 10.71 16 30 H 0.35 12.35 8.58 -89.69 -0.77 11.58 16 31 H 0.35 10.47 9.06 -89.70 -0.81 9.66 16 32 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.01 0.45 7.75 -2.39 -0.02 0.43 16 35 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 36 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 37 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 38 H 0.17 0.91 8.06 -2.91 -0.02 0.89 16 39 H 0.17 1.03 8.06 -2.91 -0.02 1.00 16 40 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -72.87 342.24 0.09 -72.78 By element: Atomic # 1 Polarization: 35.33 SS G_CDS: -1.23 Total: 34.10 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: 4.42 Total: -9.79 kcal Atomic # 7 Polarization: -117.83 SS G_CDS: -5.08 Total: -122.91 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.05 Total: -21.43 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -72.87 0.09 -72.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691612181.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.432 kcal (2) G-P(sol) polarization free energy of solvation -72.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds