Wall clock time and date at job start Mon Mar 30 2020 02:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46668 * 2 1 4 4 C 1.53002 * 109.47111 * 240.00243 * 2 1 3 5 5 C 1.52995 * 109.47266 * 179.97438 * 4 2 1 6 6 C 1.53006 * 109.47013 * 59.99980 * 5 4 2 7 7 C 1.53002 * 109.47121 * 300.00108 * 6 5 4 8 8 H 1.09007 * 109.46741 * 300.00161 * 7 6 5 9 9 C 1.50693 * 109.47126 * 180.02562 * 7 6 5 10 10 O 1.21309 * 119.99837 * 240.00325 * 9 7 6 11 11 N 1.34774 * 120.00271 * 59.99480 * 9 7 6 12 12 C 1.40600 * 119.99907 * 179.97438 * 11 9 7 13 13 C 1.40643 * 126.08337 * 359.97438 * 12 11 9 14 14 N 1.30904 * 108.38892 * 180.02562 * 13 12 11 15 15 N 1.40074 * 108.40710 * 359.97438 * 14 13 12 16 16 C 1.37322 * 126.07096 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99778 * 174.14834 * 16 15 14 18 18 C 1.38982 * 119.99978 * 354.14634 * 16 15 14 19 19 N 1.31292 * 120.00123 * 5.95292 * 18 16 15 20 20 Si 1.86803 * 119.99801 * 185.94762 * 18 16 15 21 21 H 1.48498 * 109.46975 * 94.98217 * 20 18 16 22 22 H 1.48502 * 109.47136 * 214.98044 * 20 18 16 23 23 H 1.48501 * 109.47456 * 334.98319 * 20 18 16 24 24 C 1.35685 * 126.07807 * 180.02562 * 12 11 9 25 25 C 1.52996 * 109.47188 * 120.00146 * 2 1 3 26 26 H 1.09001 * 109.46668 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47238 * 299.99528 * 1 2 3 28 28 H 1.08999 * 109.47326 * 59.99782 * 1 2 3 29 29 H 1.08999 * 109.47046 * 59.99803 * 4 2 1 30 30 H 1.09005 * 109.46871 * 300.00152 * 4 2 1 31 31 H 1.09000 * 109.47180 * 300.00323 * 5 4 2 32 32 H 1.08996 * 109.47058 * 179.97438 * 5 4 2 33 33 H 1.09004 * 109.47089 * 180.02562 * 6 5 4 34 34 H 1.09000 * 109.46868 * 60.00152 * 6 5 4 35 35 H 0.97001 * 120.00303 * 0.02562 * 11 9 7 36 36 H 1.07995 * 125.80777 * 0.02562 * 13 12 11 37 37 H 0.97001 * 120.00136 * 179.97438 * 19 18 16 38 38 H 1.08000 * 126.24872 * 359.94817 * 24 12 11 39 39 H 1.09001 * 109.47435 * 60.00323 * 25 2 1 40 40 H 1.08996 * 109.47224 * 299.99835 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7207 -1.2496 6 6 4.0805 -1.4416 -0.0004 7 6 3.5705 -0.7204 1.2489 8 1 3.9335 0.3074 1.2486 9 6 4.0738 -1.4301 2.4793 10 8 3.2862 -1.8916 3.2782 11 7 5.3991 -1.5524 2.6920 12 6 5.8686 -2.2141 3.8403 13 6 5.0739 -2.7933 4.8458 14 7 5.8654 -3.3134 5.7494 15 7 7.1914 -3.0885 5.3581 16 6 8.3145 -3.4824 6.0432 17 1 9.2915 -3.3407 5.6053 18 6 8.1937 -4.0634 7.3000 19 7 7.0051 -4.3427 7.7826 20 14 9.7227 -4.4468 8.3024 21 1 9.9958 -3.3257 9.2370 22 1 9.5066 -5.6954 9.0768 23 1 10.8810 -4.6243 7.3903 24 6 7.1691 -2.4066 4.1759 25 6 2.0400 -0.7213 1.2492 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.6767 -0.2074 -2.1392 30 1 1.6766 -1.7489 -1.2493 31 1 3.9330 0.3071 -1.2498 32 1 3.9333 -1.2348 -2.1394 33 1 5.1706 -1.4409 -0.0004 34 1 3.7175 -2.4694 -0.0003 35 1 6.0289 -1.1832 2.0534 36 1 3.9942 -2.8066 4.8685 37 1 6.9209 -4.7485 8.6596 38 1 8.0296 -2.0808 3.6104 39 1 1.6768 -1.7490 1.2492 40 1 1.6767 -0.2075 2.1392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000741679034.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:31 Heat of formation + Delta-G solvation = 15.803202 kcal Electronic energy + Delta-G solvation = -21240.445361 eV Core-core repulsion = 18055.805048 eV Total energy + Delta-G solvation = -3184.640312 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.16073 -39.19587 -37.59752 -34.17932 -33.26264 -32.59061 -31.03506 -30.14227 -27.72600 -26.44451 -24.98721 -23.42498 -21.77845 -20.92304 -20.12649 -19.61895 -19.28066 -17.41929 -16.45673 -15.43100 -15.34796 -15.16513 -14.77956 -14.53604 -14.19679 -13.82287 -13.65382 -13.35613 -13.01263 -12.82192 -12.50673 -12.44491 -11.89735 -11.67741 -11.60341 -11.37458 -11.26250 -11.19437 -11.06078 -10.89446 -10.57570 -10.51451 -10.42907 -10.15163 -10.07120 -9.12867 -8.99111 -8.75447 -8.01791 -6.64655 -6.53373 -4.19628 2.88944 3.06189 3.08481 3.11810 3.66349 3.71915 3.91716 4.45345 4.56309 4.61200 4.62918 4.88043 5.01209 5.03341 5.06071 5.23009 5.32375 5.33875 5.41641 5.51174 5.57822 5.68380 5.73883 5.86061 5.89937 6.04529 6.09728 6.11717 6.16503 6.27929 6.31803 6.44609 6.52197 6.95704 7.01294 7.18608 7.29578 7.89779 8.24795 8.34950 8.68303 8.95000 9.42014 9.71167 10.43042 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.051106 B = 0.003260 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.745531 B = 8587.888267 C = 9000.212702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 H 0.068 0.932 4 C -0.116 4.116 5 C -0.117 4.117 6 C -0.111 4.111 7 C -0.101 4.101 8 H 0.091 0.909 9 C 0.501 3.499 10 O -0.537 6.537 11 N -0.626 5.626 12 C -0.059 4.059 13 C -0.034 4.034 14 N -0.261 5.261 15 N -0.144 5.144 16 C -0.324 4.324 17 H 0.116 0.884 18 C 0.046 3.954 19 N -0.770 5.770 20 Si 0.934 3.066 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.264 1.264 24 C -0.085 4.085 25 C -0.093 4.093 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.395 0.605 36 H 0.175 0.825 37 H 0.274 0.726 38 H 0.145 0.855 39 H 0.070 0.930 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.099 8.011 -15.935 18.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 H 0.087 0.913 4 C -0.153 4.153 5 C -0.155 4.155 6 C -0.149 4.149 7 C -0.122 4.122 8 H 0.109 0.891 9 C 0.287 3.713 10 O -0.414 6.414 11 N -0.268 5.268 12 C -0.164 4.164 13 C -0.210 4.210 14 N -0.092 5.092 15 N 0.088 4.912 16 C -0.457 4.457 17 H 0.133 0.867 18 C -0.171 4.171 19 N -0.397 5.397 20 Si 0.758 3.242 21 H -0.197 1.197 22 H -0.201 1.201 23 H -0.188 1.188 24 C -0.235 4.235 25 C -0.130 4.130 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.228 0.772 36 H 0.192 0.808 37 H 0.085 0.915 38 H 0.162 0.838 39 H 0.089 0.911 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.719 6.926 -14.047 16.673 hybrid contribution 1.108 0.524 -0.692 1.407 sum -4.611 7.451 -14.739 17.147 Atomic orbital electron populations 1.21813 0.95236 1.01907 1.01443 1.21164 0.95500 0.99512 0.94944 0.91330 1.21622 0.95442 1.00869 0.97380 1.21526 0.95778 1.00678 0.97470 1.21546 1.00451 0.99866 0.93063 1.21289 0.97722 1.00210 0.93024 0.89079 1.20420 0.82020 0.81244 0.87594 1.90584 1.55240 1.48739 1.46835 1.42579 1.06506 1.55224 1.22505 1.17318 0.92067 1.13500 0.93522 1.24102 1.00147 1.03394 0.93337 1.78235 0.85489 1.24059 1.21464 1.44537 1.05277 1.29903 1.11503 1.19858 0.84123 1.41641 1.00043 0.86678 1.25635 0.98419 0.95746 0.97260 1.70226 1.22407 1.30517 1.16540 0.85824 0.80268 0.78448 0.79663 1.19671 1.20123 1.18815 1.21268 0.95794 1.11369 0.95108 1.21390 0.92536 1.01795 0.97323 0.92626 0.92609 0.92940 0.92204 0.91867 0.91870 0.91813 0.91516 0.91275 0.77179 0.80778 0.91521 0.83792 0.91113 0.91200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.19 37.16 0.34 -0.91 16 2 C -0.09 -0.85 2.72 -90.62 -0.25 -1.10 16 3 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 4 C -0.12 -0.97 5.20 -26.73 -0.14 -1.10 16 5 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 6 C -0.11 -1.15 5.10 -26.73 -0.14 -1.29 16 7 C -0.10 -1.24 2.53 -91.75 -0.23 -1.47 16 8 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 9 C 0.50 8.83 7.13 -10.99 -0.08 8.75 16 10 O -0.54 -11.71 13.14 5.53 0.07 -11.63 16 11 N -0.63 -11.30 5.36 -10.00 -0.05 -11.35 16 12 C -0.06 -1.38 6.90 -83.84 -0.58 -1.96 16 13 C -0.03 -0.93 10.85 -17.04 -0.18 -1.11 16 14 N -0.26 -7.76 10.42 30.80 0.32 -7.44 16 15 N -0.14 -4.03 3.74 -11.41 -0.04 -4.08 16 16 C -0.32 -8.72 10.24 -14.82 -0.15 -8.87 16 17 H 0.12 2.76 7.84 -52.49 -0.41 2.35 16 18 C 0.05 1.22 5.50 -17.51 -0.10 1.12 16 19 N -0.77 -21.85 11.84 55.49 0.66 -21.19 16 20 Si 0.93 19.16 29.56 -169.99 -5.02 14.14 16 21 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 22 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 23 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 24 C -0.08 -2.03 11.49 -16.39 -0.19 -2.22 16 25 C -0.09 -1.12 3.78 -26.71 -0.10 -1.22 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.63 7.56 -51.93 -0.39 0.24 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.40 5.54 8.24 -40.82 -0.34 5.20 16 36 H 0.18 4.69 5.92 -52.49 -0.31 4.38 16 37 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 38 H 0.14 2.88 8.06 -52.49 -0.42 2.45 16 39 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 40 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 LS Contribution 325.46 15.07 4.90 4.90 Total: -1.00 -33.15 325.46 -7.19 -40.34 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -6.08 Total: 8.79 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: -1.95 Total: -12.49 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: 0.88 Total: -44.06 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.07 Total: -11.63 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.02 Total: 14.14 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.15 -7.19 -40.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741679034.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.148 kcal (2) G-P(sol) polarization free energy of solvation -33.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds