Wall clock time and date at job start Mon Mar 30 2020 02:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46668 * 2 1 4 4 C 1.53002 * 109.47111 * 240.00243 * 2 1 3 5 5 C 1.52995 * 109.47266 * 179.97438 * 4 2 1 6 6 C 1.53006 * 109.47013 * 59.99980 * 5 4 2 7 7 C 1.53002 * 109.47121 * 300.00108 * 6 5 4 8 8 H 1.09007 * 109.46741 * 300.00161 * 7 6 5 9 9 C 1.50693 * 109.47126 * 180.02562 * 7 6 5 10 10 O 1.21309 * 119.99837 * 240.00325 * 9 7 6 11 11 N 1.34774 * 120.00271 * 59.99480 * 9 7 6 12 12 C 1.40600 * 119.99907 * 179.97438 * 11 9 7 13 13 C 1.40643 * 126.08337 * 359.97438 * 12 11 9 14 14 N 1.30904 * 108.38892 * 180.02562 * 13 12 11 15 15 N 1.40074 * 108.40710 * 359.97438 * 14 13 12 16 16 C 1.37322 * 126.07096 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99778 * 174.14834 * 16 15 14 18 18 C 1.38982 * 119.99978 * 354.14634 * 16 15 14 19 19 N 1.31292 * 120.00123 * 5.95292 * 18 16 15 20 20 Si 1.86803 * 119.99801 * 185.94762 * 18 16 15 21 21 H 1.48498 * 109.46975 * 94.98217 * 20 18 16 22 22 H 1.48502 * 109.47136 * 214.98044 * 20 18 16 23 23 H 1.48501 * 109.47456 * 334.98319 * 20 18 16 24 24 C 1.35685 * 126.07807 * 180.02562 * 12 11 9 25 25 C 1.52996 * 109.47188 * 120.00146 * 2 1 3 26 26 H 1.09001 * 109.46668 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47238 * 299.99528 * 1 2 3 28 28 H 1.08999 * 109.47326 * 59.99782 * 1 2 3 29 29 H 1.08999 * 109.47046 * 59.99803 * 4 2 1 30 30 H 1.09005 * 109.46871 * 300.00152 * 4 2 1 31 31 H 1.09000 * 109.47180 * 300.00323 * 5 4 2 32 32 H 1.08996 * 109.47058 * 179.97438 * 5 4 2 33 33 H 1.09004 * 109.47089 * 180.02562 * 6 5 4 34 34 H 1.09000 * 109.46868 * 60.00152 * 6 5 4 35 35 H 0.97001 * 120.00303 * 0.02562 * 11 9 7 36 36 H 1.07995 * 125.80777 * 0.02562 * 13 12 11 37 37 H 0.97001 * 120.00136 * 179.97438 * 19 18 16 38 38 H 1.08000 * 126.24872 * 359.94817 * 24 12 11 39 39 H 1.09001 * 109.47435 * 60.00323 * 25 2 1 40 40 H 1.08996 * 109.47224 * 299.99835 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7207 -1.2496 6 6 4.0805 -1.4416 -0.0004 7 6 3.5705 -0.7204 1.2489 8 1 3.9335 0.3074 1.2486 9 6 4.0738 -1.4301 2.4793 10 8 3.2862 -1.8916 3.2782 11 7 5.3991 -1.5524 2.6920 12 6 5.8686 -2.2141 3.8403 13 6 5.0739 -2.7933 4.8458 14 7 5.8654 -3.3134 5.7494 15 7 7.1914 -3.0885 5.3581 16 6 8.3145 -3.4824 6.0432 17 1 9.2915 -3.3407 5.6053 18 6 8.1937 -4.0634 7.3000 19 7 7.0051 -4.3427 7.7826 20 14 9.7227 -4.4468 8.3024 21 1 9.9958 -3.3257 9.2370 22 1 9.5066 -5.6954 9.0768 23 1 10.8810 -4.6243 7.3903 24 6 7.1691 -2.4066 4.1759 25 6 2.0400 -0.7213 1.2492 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.6767 -0.2074 -2.1392 30 1 1.6766 -1.7489 -1.2493 31 1 3.9330 0.3071 -1.2498 32 1 3.9333 -1.2348 -2.1394 33 1 5.1706 -1.4409 -0.0004 34 1 3.7175 -2.4694 -0.0003 35 1 6.0289 -1.1832 2.0534 36 1 3.9942 -2.8066 4.8685 37 1 6.9209 -4.7485 8.6596 38 1 8.0296 -2.0808 3.6104 39 1 1.6768 -1.7490 1.2492 40 1 1.6767 -0.2075 2.1392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000741679034.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:30 Heat of formation + Delta-G solvation = -5.352704 kcal Electronic energy + Delta-G solvation = -21241.362750 eV Core-core repulsion = 18055.805048 eV Total energy + Delta-G solvation = -3185.557701 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.79129 -40.74169 -38.77030 -35.92636 -35.00809 -33.55800 -32.28961 -31.82135 -29.56233 -27.27057 -26.83427 -24.65557 -22.83670 -22.56003 -21.54774 -21.02956 -20.57230 -19.25301 -17.86324 -17.38157 -16.89560 -16.33746 -15.95885 -15.70301 -15.34821 -15.22527 -14.98188 -14.80531 -14.67676 -14.06546 -13.57100 -13.44713 -13.29038 -13.25169 -12.95186 -12.80704 -12.68567 -12.35749 -12.09033 -12.06374 -11.85084 -11.76695 -11.36256 -11.27993 -11.01040 -10.93776 -10.82247 -10.44554 -10.10306 -8.51803 -8.47568 -6.24569 1.22706 1.39525 1.54892 1.58057 1.87611 2.06666 2.34374 2.53240 2.92892 3.07846 3.70323 3.75921 3.80963 4.19943 4.21674 4.33434 4.41295 4.45529 4.56958 4.58672 4.62395 4.73001 4.82619 4.91261 5.00727 5.02517 5.09829 5.14560 5.19834 5.25399 5.29764 5.34812 5.38473 5.42666 5.46258 5.52177 5.65464 5.96244 6.32386 6.73799 6.79985 7.43557 7.48787 7.68590 8.52204 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.051106 B = 0.003260 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.745531 B = 8587.888267 C = 9000.212702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 H 0.083 0.917 4 C -0.115 4.115 5 C -0.111 4.111 6 C -0.109 4.109 7 C -0.088 4.088 8 H 0.120 0.880 9 C 0.496 3.504 10 O -0.583 6.583 11 N -0.617 5.617 12 C -0.044 4.044 13 C -0.063 4.063 14 N -0.312 5.312 15 N -0.169 5.169 16 C -0.355 4.355 17 H 0.142 0.858 18 C -0.008 4.008 19 N -0.826 5.826 20 Si 1.020 2.980 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.242 1.242 24 C -0.081 4.081 25 C -0.092 4.092 26 H 0.047 0.953 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.052 0.948 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.050 0.950 35 H 0.419 0.581 36 H 0.164 0.836 37 H 0.276 0.724 38 H 0.189 0.811 39 H 0.046 0.954 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.106 9.659 -18.503 21.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.105 4.105 3 H 0.101 0.899 4 C -0.153 4.153 5 C -0.148 4.148 6 C -0.147 4.147 7 C -0.109 4.109 8 H 0.138 0.862 9 C 0.285 3.715 10 O -0.463 6.463 11 N -0.262 5.262 12 C -0.151 4.151 13 C -0.238 4.238 14 N -0.144 5.144 15 N 0.062 4.938 16 C -0.486 4.486 17 H 0.159 0.841 18 C -0.219 4.219 19 N -0.454 5.454 20 Si 0.839 3.161 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.164 1.164 24 C -0.231 4.231 25 C -0.130 4.130 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.071 0.929 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.069 0.931 35 H 0.256 0.744 36 H 0.181 0.819 37 H 0.086 0.914 38 H 0.206 0.794 39 H 0.065 0.935 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.720 8.607 -16.686 19.140 hybrid contribution 0.377 0.054 0.012 0.382 sum -3.343 8.661 -16.674 19.084 Atomic orbital electron populations 1.21821 0.94909 1.01635 1.02101 1.21137 0.95806 0.99845 0.93664 0.89857 1.21637 0.95784 1.00404 0.97466 1.21517 0.95364 1.01483 0.96470 1.21574 1.01308 0.98874 0.92972 1.21326 0.97563 1.01040 0.90943 0.86182 1.21557 0.81302 0.80151 0.88485 1.90574 1.56386 1.50490 1.48825 1.42556 1.07409 1.54834 1.21368 1.17412 0.91519 1.12021 0.94104 1.24128 0.99916 1.04950 0.94827 1.78131 0.87067 1.25890 1.23310 1.44850 1.04860 1.31172 1.12941 1.20631 0.84842 1.42235 1.00891 0.84118 1.26911 1.02046 0.94742 0.98195 1.70411 1.25546 1.32208 1.17216 0.84563 0.75912 0.77937 0.77677 1.19174 1.20177 1.16443 1.22016 0.97287 1.09805 0.94013 1.21383 0.92584 1.00655 0.98405 0.93427 0.93131 0.91100 0.90228 0.92907 0.90108 0.90418 0.90078 0.93146 0.74407 0.81898 0.91428 0.79413 0.93483 0.93086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.19 71.98 0.66 -1.64 16 2 C -0.09 -1.40 2.72 -10.79 -0.03 -1.43 16 3 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 4 C -0.12 -1.59 5.20 30.59 0.16 -1.43 16 5 C -0.11 -1.40 5.92 30.59 0.18 -1.22 16 6 C -0.11 -1.98 5.10 30.60 0.16 -1.82 16 7 C -0.09 -2.00 2.53 -11.52 -0.03 -2.03 16 8 H 0.12 2.13 8.14 -2.38 -0.02 2.11 16 9 C 0.50 17.39 7.13 87.66 0.62 18.01 16 10 O -0.58 -26.50 13.14 -3.12 -0.04 -26.54 16 11 N -0.62 -21.49 5.36 -303.93 -1.63 -23.11 16 12 C -0.04 -2.09 6.90 37.73 0.26 -1.83 16 13 C -0.06 -3.57 10.85 85.42 0.93 -2.64 16 14 N -0.31 -19.35 10.42 -56.48 -0.59 -19.94 16 15 N -0.17 -9.58 3.74 -190.01 -0.71 -10.29 16 16 C -0.36 -19.08 10.24 84.01 0.86 -18.22 16 17 H 0.14 6.53 7.84 -2.91 -0.02 6.51 16 18 C -0.01 -0.40 5.50 84.95 0.47 0.07 16 19 N -0.83 -48.60 11.84 21.66 0.26 -48.35 16 20 Si 1.02 39.07 29.56 68.60 2.03 41.10 16 21 H -0.27 -9.92 7.11 99.48 0.71 -9.22 16 22 H -0.28 -10.48 7.11 99.48 0.71 -9.77 16 23 H -0.24 -8.28 7.11 99.48 0.71 -7.57 16 24 C -0.08 -3.81 11.49 83.38 0.96 -2.85 16 25 C -0.09 -2.19 3.78 30.61 0.12 -2.08 16 26 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.08 1.24 7.56 -2.38 -0.02 1.23 16 34 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.42 10.49 8.24 -92.71 -0.76 9.73 16 36 H 0.16 9.40 5.92 -2.91 -0.02 9.39 16 37 H 0.28 14.92 8.31 -92.71 -0.77 14.15 16 38 H 0.19 6.90 8.06 -2.91 -0.02 6.87 16 39 H 0.05 1.32 8.10 -2.39 -0.02 1.30 16 40 H 0.05 1.38 8.10 -2.39 -0.02 1.36 16 Total: -1.00 -77.16 325.46 4.90 -72.26 By element: Atomic # 1 Polarization: 33.70 SS G_CDS: 0.27 Total: 33.97 kcal Atomic # 6 Polarization: -24.41 SS G_CDS: 5.31 Total: -19.10 kcal Atomic # 7 Polarization: -99.02 SS G_CDS: -2.67 Total: -101.69 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.04 Total: -26.54 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 2.03 Total: 41.10 kcal Total: -77.16 4.90 -72.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741679034.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.904 kcal (2) G-P(sol) polarization free energy of solvation -77.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds