Wall clock time and date at job start Mon Mar 30 2020 02:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47103 * 2 1 4 4 C 1.52997 * 109.47482 * 120.00247 * 2 1 3 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47233 * 299.99657 * 5 4 2 7 7 C 1.52997 * 109.46817 * 60.00194 * 6 5 4 8 8 H 1.09002 * 109.47153 * 60.00231 * 7 6 5 9 9 C 1.50699 * 109.47078 * 180.02562 * 7 6 5 10 10 O 1.21309 * 120.00094 * 120.00341 * 9 7 6 11 11 N 1.34780 * 120.00249 * 299.99993 * 9 7 6 12 12 C 1.40587 * 119.99969 * 179.97438 * 11 9 7 13 13 C 1.40647 * 126.08610 * 0.02987 * 12 11 9 14 14 N 1.30906 * 108.38952 * 179.97438 * 13 12 11 15 15 N 1.40069 * 108.40657 * 0.02562 * 14 13 12 16 16 C 1.37326 * 126.06734 * 179.97438 * 15 14 13 17 17 H 1.07997 * 119.99747 * 180.02562 * 16 15 14 18 18 C 1.38981 * 120.00227 * 0.02562 * 16 15 14 19 19 N 1.31292 * 120.00058 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99954 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47082 * 60.00664 * 20 18 16 22 22 H 1.48504 * 109.47084 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47161 * 300.00180 * 20 18 16 24 24 C 1.35679 * 126.08086 * 179.71431 * 12 11 9 25 25 C 1.52999 * 109.46961 * 240.00608 * 2 1 3 26 26 H 1.09001 * 109.47066 * 299.99922 * 1 2 3 27 27 H 1.08996 * 109.47747 * 59.99588 * 1 2 3 28 28 H 1.09002 * 109.47103 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 59.99783 * 4 2 1 30 30 H 1.09001 * 109.46832 * 299.99974 * 4 2 1 31 31 H 1.08992 * 109.47399 * 59.99823 * 5 4 2 32 32 H 1.09004 * 109.46724 * 180.02562 * 5 4 2 33 33 H 1.08993 * 109.47662 * 180.02562 * 6 5 4 34 34 H 1.09002 * 109.47075 * 300.00932 * 6 5 4 35 35 H 0.96998 * 119.99818 * 0.02562 * 11 9 7 36 36 H 1.08006 * 125.80887 * 359.97438 * 13 12 11 37 37 H 0.97000 * 120.00041 * 179.97438 * 19 18 16 38 38 H 1.08005 * 126.24664 * 359.96745 * 24 12 11 39 39 H 1.09000 * 109.47486 * 59.99547 * 25 2 1 40 40 H 1.09002 * 109.46716 * 299.99630 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7207 1.2494 6 6 4.0805 -1.4415 0.0001 7 6 3.5704 -0.7203 -1.2490 8 1 3.9334 0.3075 -1.2488 9 6 4.0727 -1.4306 -2.4795 10 8 3.2844 -1.8916 -3.2781 11 7 5.3978 -1.5538 -2.6930 12 6 5.8663 -2.2169 -3.8406 13 6 5.0707 -2.7968 -4.8451 14 7 5.8615 -3.3184 -5.7486 15 7 7.1878 -3.0937 -5.3582 16 6 8.3103 -3.4899 -6.0430 17 1 9.2905 -3.2639 -5.6499 18 6 8.1849 -4.1816 -7.2420 19 7 6.9934 -4.4559 -7.7201 20 14 9.7119 -4.7198 -8.1738 21 1 10.5193 -5.6269 -7.3191 22 1 9.3099 -5.4336 -9.4124 23 1 10.5201 -3.5264 -8.5309 24 6 7.1664 -2.4062 -4.1794 25 6 2.0399 -0.7211 -1.2493 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6767 -1.7490 1.2492 30 1 1.6767 -0.2074 2.1392 31 1 3.9329 0.3071 1.2496 32 1 3.9334 -1.2349 2.1391 33 1 5.1704 -1.4415 0.0004 34 1 3.7175 -2.4693 -0.0002 35 1 6.0282 -1.1855 -2.0543 36 1 3.9910 -2.8097 -4.8673 37 1 6.9059 -4.9384 -8.5571 38 1 8.0274 -2.0749 -3.6177 39 1 1.6765 -0.2073 -2.1393 40 1 1.6765 -1.7488 -1.2493 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000741679036.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:36 Heat of formation + Delta-G solvation = -5.147113 kcal Electronic energy + Delta-G solvation = -21242.651116 eV Core-core repulsion = 18057.102330 eV Total energy + Delta-G solvation = -3185.548786 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.79084 -40.74176 -38.77024 -35.92686 -35.00671 -33.55864 -32.28819 -31.82078 -29.56031 -27.27061 -26.83386 -24.65488 -22.83633 -22.56044 -21.54763 -21.02981 -20.57268 -19.25049 -17.86230 -17.37621 -16.89555 -16.33787 -15.95901 -15.70521 -15.34495 -15.22900 -14.98189 -14.80173 -14.67207 -14.06609 -13.55619 -13.44499 -13.28437 -13.25282 -12.87255 -12.86254 -12.68615 -12.35859 -12.13874 -12.08585 -11.84371 -11.76451 -11.36211 -11.28077 -10.98751 -10.93815 -10.82663 -10.44487 -10.10295 -8.51626 -8.46843 -6.24369 1.23772 1.39394 1.55835 1.56168 1.87866 2.07248 2.34482 2.53341 2.92819 3.09041 3.70259 3.75938 3.80967 4.19894 4.21655 4.33436 4.41302 4.45518 4.56932 4.58531 4.62230 4.72941 4.82615 4.91238 5.00105 5.02512 5.09853 5.14549 5.19843 5.25401 5.29834 5.34824 5.38444 5.42660 5.46281 5.52286 5.65473 5.95967 6.32419 6.73986 6.80035 7.43460 7.48780 7.68749 8.52547 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.050824 B = 0.003261 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.791032 B = 8583.873401 C = 8992.704727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 H 0.083 0.917 4 C -0.115 4.115 5 C -0.111 4.111 6 C -0.109 4.109 7 C -0.087 4.087 8 H 0.121 0.879 9 C 0.496 3.504 10 O -0.583 6.583 11 N -0.617 5.617 12 C -0.044 4.044 13 C -0.064 4.064 14 N -0.311 5.311 15 N -0.168 5.168 16 C -0.355 4.355 17 H 0.142 0.858 18 C -0.008 4.008 19 N -0.826 5.826 20 Si 1.021 2.979 21 H -0.253 1.253 22 H -0.279 1.279 23 H -0.253 1.253 24 C -0.082 4.082 25 C -0.092 4.092 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.047 0.953 29 H 0.052 0.948 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.419 0.581 36 H 0.164 0.836 37 H 0.276 0.724 38 H 0.189 0.811 39 H 0.050 0.950 40 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.092 9.595 18.461 21.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.105 4.105 3 H 0.101 0.899 4 C -0.153 4.153 5 C -0.148 4.148 6 C -0.147 4.147 7 C -0.109 4.109 8 H 0.138 0.862 9 C 0.285 3.715 10 O -0.463 6.463 11 N -0.262 5.262 12 C -0.151 4.151 13 C -0.239 4.239 14 N -0.143 5.143 15 N 0.062 4.938 16 C -0.486 4.486 17 H 0.159 0.841 18 C -0.219 4.219 19 N -0.454 5.454 20 Si 0.839 3.161 21 H -0.177 1.177 22 H -0.204 1.204 23 H -0.177 1.177 24 C -0.232 4.232 25 C -0.130 4.130 26 H 0.089 0.911 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.068 0.932 35 H 0.256 0.744 36 H 0.181 0.819 37 H 0.086 0.914 38 H 0.206 0.794 39 H 0.069 0.931 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.712 8.539 16.642 19.070 hybrid contribution 0.392 0.014 0.026 0.393 sum -3.320 8.553 16.668 19.026 Atomic orbital electron populations 1.21819 0.94910 1.01633 1.02105 1.21135 0.95806 0.99848 0.93662 0.89850 1.21637 0.95783 1.00402 0.97472 1.21516 0.95365 1.01486 0.96465 1.21571 1.01311 0.98870 0.92984 1.21327 0.97566 1.01037 0.90932 0.86165 1.21561 0.81299 0.80157 0.88484 1.90573 1.56335 1.50512 1.48850 1.42553 1.07417 1.54803 1.21388 1.17406 0.91521 1.11933 0.94192 1.24134 0.99919 1.04846 0.94968 1.78138 0.87003 1.26126 1.23057 1.44844 1.04883 1.31118 1.12925 1.20598 0.84759 1.37889 1.05389 0.84098 1.26910 1.02026 0.95311 0.97670 1.70403 1.25335 1.31151 1.18543 0.84637 0.75389 0.79173 0.76895 1.17651 1.20350 1.17659 1.22010 0.97303 1.09942 0.93978 1.21387 0.92584 1.00653 0.98407 0.91100 0.93127 0.93432 0.92914 0.90225 0.90100 0.90423 0.90079 0.93164 0.74414 0.81897 0.91427 0.79430 0.93077 0.93494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.19 71.98 0.66 -1.64 16 2 C -0.09 -1.40 2.72 -10.80 -0.03 -1.43 16 3 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 4 C -0.12 -1.59 5.20 30.59 0.16 -1.43 16 5 C -0.11 -1.40 5.92 30.60 0.18 -1.22 16 6 C -0.11 -1.98 5.10 30.59 0.16 -1.83 16 7 C -0.09 -2.00 2.53 -11.52 -0.03 -2.03 16 8 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 9 C 0.50 17.40 7.13 87.66 0.62 18.03 16 10 O -0.58 -26.51 13.13 -3.12 -0.04 -26.55 16 11 N -0.62 -21.52 5.36 -303.92 -1.63 -23.14 16 12 C -0.04 -2.09 6.90 37.73 0.26 -1.83 16 13 C -0.06 -3.60 10.85 85.42 0.93 -2.67 16 14 N -0.31 -19.31 10.40 -56.46 -0.59 -19.90 16 15 N -0.17 -9.56 3.74 -190.02 -0.71 -10.27 16 16 C -0.36 -19.11 10.25 84.01 0.86 -18.25 16 17 H 0.14 6.51 7.83 -2.91 -0.02 6.49 16 18 C -0.01 -0.41 5.50 84.95 0.47 0.06 16 19 N -0.83 -48.67 11.81 21.66 0.26 -48.42 16 20 Si 1.02 39.03 29.55 68.60 2.03 41.06 16 21 H -0.25 -8.99 7.11 99.48 0.71 -8.28 16 22 H -0.28 -10.58 7.11 99.48 0.71 -9.88 16 23 H -0.25 -8.99 7.11 99.48 0.71 -8.29 16 24 C -0.08 -3.87 11.49 83.38 0.96 -2.91 16 25 C -0.09 -2.19 3.77 30.61 0.12 -2.08 16 26 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.08 1.25 7.56 -2.39 -0.02 1.23 16 34 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.42 10.51 8.24 -92.71 -0.76 9.75 16 36 H 0.16 9.41 5.92 -2.91 -0.02 9.40 16 37 H 0.28 14.98 8.31 -92.71 -0.77 14.21 16 38 H 0.19 6.90 8.06 -2.91 -0.02 6.88 16 39 H 0.05 1.38 8.10 -2.39 -0.02 1.37 16 40 H 0.05 1.32 8.10 -2.39 -0.02 1.30 16 Total: -1.00 -77.17 325.41 4.90 -72.27 By element: Atomic # 1 Polarization: 33.92 SS G_CDS: 0.27 Total: 34.19 kcal Atomic # 6 Polarization: -24.55 SS G_CDS: 5.31 Total: -19.24 kcal Atomic # 7 Polarization: -99.06 SS G_CDS: -2.67 Total: -101.73 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -0.04 Total: -26.55 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.06 kcal Total: -77.17 4.90 -72.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741679036.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.125 kcal (2) G-P(sol) polarization free energy of solvation -77.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds