Wall clock time and date at job start Mon Mar 30 2020 02:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 110.43792 * 2 1 4 4 C 1.54891 * 110.60085 * 237.38204 * 2 1 3 5 5 C 1.54963 * 102.78047 * 203.35337 * 4 2 1 6 6 C 1.54268 * 104.15908 * 37.88535 * 5 4 2 7 7 H 1.08998 * 110.03029 * 95.75263 * 6 5 4 8 8 C 1.53002 * 110.03549 * 217.13880 * 6 5 4 9 9 C 1.50697 * 109.46884 * 292.91052 * 8 6 5 10 10 O 1.21308 * 120.00082 * 359.97438 * 9 8 6 11 11 N 1.34774 * 119.99954 * 179.97438 * 9 8 6 12 12 C 1.40594 * 120.00067 * 179.97438 * 11 9 8 13 13 C 1.40650 * 126.08395 * 359.97438 * 12 11 9 14 14 N 1.30905 * 108.38944 * 180.02562 * 13 12 11 15 15 N 1.40075 * 108.40615 * 359.97438 * 14 13 12 16 16 C 1.37323 * 126.06722 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00043 * 180.02562 * 16 15 14 18 18 C 1.38990 * 120.00330 * 0.02562 * 16 15 14 19 19 N 1.31299 * 119.99795 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00284 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46923 * 60.00065 * 20 18 16 22 22 H 1.48496 * 109.47129 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47010 * 300.00313 * 20 18 16 24 24 C 1.35685 * 126.08136 * 179.97438 * 12 11 9 25 25 C 1.53874 * 106.64301 * 336.44861 * 6 5 4 26 26 H 1.08998 * 109.47774 * 297.46337 * 1 2 3 27 27 H 1.09002 * 109.47052 * 57.45722 * 1 2 3 28 28 H 1.09003 * 109.47472 * 177.45591 * 1 2 3 29 29 H 1.09005 * 110.75487 * 321.64425 * 4 2 1 30 30 H 1.08995 * 110.75560 * 84.82488 * 4 2 1 31 31 H 1.08997 * 110.47482 * 279.23899 * 5 4 2 32 32 H 1.08995 * 110.53216 * 156.56631 * 5 4 2 33 33 H 1.08993 * 109.46964 * 172.90773 * 8 6 5 34 34 H 1.08998 * 109.47113 * 52.90782 * 8 6 5 35 35 H 0.96996 * 120.00079 * 0.02562 * 11 9 8 36 36 H 1.08002 * 125.80681 * 0.03201 * 13 12 11 37 37 H 0.96995 * 119.99726 * 180.02562 * 19 18 16 38 38 H 1.07995 * 126.24897 * 359.95183 * 24 12 11 39 39 H 1.08999 * 110.03459 * 119.25648 * 25 6 5 40 40 H 1.08995 * 110.03640 * 240.69224 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0749 -0.7815 -1.2212 5 6 3.4943 -1.1959 -0.7574 6 6 3.3184 -1.5370 0.7368 7 1 3.1731 -2.6102 0.8602 8 6 4.5466 -1.0805 1.5268 9 6 5.7404 -1.9053 1.1202 10 8 5.6206 -2.7734 0.2813 11 7 6.9413 -1.6786 1.6885 12 6 8.0550 -2.4485 1.3095 13 6 8.0615 -3.4826 0.3563 14 7 9.2766 -3.9627 0.2760 15 7 10.0911 -3.2568 1.1707 16 6 11.4322 -3.4649 1.3798 17 1 11.9670 -2.8606 2.0977 18 6 12.1016 -4.4531 0.6677 19 7 11.4516 -5.1874 -0.2054 20 14 13.9261 -4.7357 0.9516 21 1 14.1552 -5.1001 2.3729 22 1 14.3986 -5.8374 0.0752 23 1 14.6749 -3.4937 0.6321 24 6 9.3148 -2.3260 1.7984 25 6 2.0698 -0.7774 1.2183 26 1 -0.3634 0.4739 0.9118 27 1 -0.3633 0.5528 -0.8663 28 1 -0.3634 -1.0267 -0.0456 29 1 1.4626 -1.6608 -1.4217 30 1 2.1248 -0.1389 -2.1001 31 1 4.1924 -0.3679 -0.8800 32 1 3.8371 -2.0703 -1.3105 33 1 4.3615 -1.2101 2.5930 34 1 4.7431 -0.0290 1.3173 35 1 7.0370 -0.9848 2.3595 36 1 7.2089 -3.8228 -0.2128 37 1 11.9186 -5.8774 -0.7021 38 1 9.6434 -1.6205 2.5471 39 1 1.3183 -1.4820 1.5745 40 1 2.3388 -0.0835 2.0146 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759170422.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:07 Heat of formation + Delta-G solvation = 20.732440 kcal Electronic energy + Delta-G solvation = -20947.994606 eV Core-core repulsion = 17763.568041 eV Total energy + Delta-G solvation = -3184.426564 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.97663 -39.09176 -37.82369 -34.13919 -33.10710 -32.54652 -30.23134 -29.67445 -28.05940 -26.81895 -24.86006 -24.01824 -21.08864 -20.60395 -20.09570 -19.34174 -19.24525 -17.46082 -16.57490 -15.52402 -15.42792 -15.22241 -15.09727 -14.51210 -13.99540 -13.64192 -13.39015 -13.17871 -13.10475 -12.90635 -12.80819 -12.36814 -11.74539 -11.65818 -11.37100 -11.21708 -11.04887 -10.92570 -10.84705 -10.73789 -10.68739 -10.54730 -10.51021 -10.34489 -10.05731 -9.11445 -9.02046 -8.75283 -8.01574 -6.64008 -6.52342 -4.19068 2.91021 3.06253 3.10295 3.10383 3.68982 3.72827 3.93010 4.46913 4.51762 4.58008 4.66693 4.83694 5.05015 5.05818 5.20316 5.26467 5.40261 5.46048 5.50049 5.56923 5.62249 5.67950 5.80355 5.82822 5.90007 6.03651 6.07259 6.12136 6.28460 6.34414 6.42750 6.52210 6.56820 6.95457 7.01778 7.19525 7.30500 7.89847 8.25667 8.35938 8.69054 8.96635 9.42244 9.71754 10.43761 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.061975 B = 0.002959 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.685230 B = 9460.885152 C = 9741.020318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.071 0.929 4 C -0.122 4.122 5 C -0.112 4.112 6 C -0.074 4.074 7 H 0.080 0.920 8 C -0.130 4.130 9 C 0.496 3.504 10 O -0.534 6.534 11 N -0.630 5.630 12 C -0.058 4.058 13 C -0.035 4.035 14 N -0.261 5.261 15 N -0.144 5.144 16 C -0.324 4.324 17 H 0.115 0.885 18 C 0.046 3.954 19 N -0.771 5.771 20 Si 0.934 3.066 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.267 1.267 24 C -0.086 4.086 25 C -0.117 4.117 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.395 0.605 36 H 0.176 0.824 37 H 0.275 0.725 38 H 0.144 0.856 39 H 0.064 0.936 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.814 10.351 3.522 18.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.089 0.911 4 C -0.160 4.160 5 C -0.150 4.150 6 C -0.093 4.093 7 H 0.098 0.902 8 C -0.170 4.170 9 C 0.282 3.718 10 O -0.411 6.411 11 N -0.272 5.272 12 C -0.163 4.163 13 C -0.210 4.210 14 N -0.092 5.092 15 N 0.088 4.912 16 C -0.456 4.456 17 H 0.133 0.867 18 C -0.171 4.171 19 N -0.398 5.398 20 Si 0.758 3.242 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.192 1.192 24 C -0.237 4.237 25 C -0.155 4.155 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.228 0.772 36 H 0.193 0.807 37 H 0.085 0.915 38 H 0.162 0.838 39 H 0.083 0.917 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.109 8.670 2.185 16.704 hybrid contribution 0.425 0.973 1.046 1.491 sum -13.684 9.643 3.231 17.049 Atomic orbital electron populations 1.21807 0.95366 1.01690 1.01269 1.21973 0.95084 0.99234 0.95405 0.91052 1.22616 0.96872 0.99479 0.97025 1.22378 0.95807 1.01625 0.95188 1.21490 0.92232 1.00621 0.94986 0.90200 1.21790 0.93558 1.00198 1.01455 1.20480 0.83720 0.85053 0.82501 1.90577 1.84361 1.33501 1.32670 1.42607 1.07349 1.36090 1.41164 1.17309 0.86653 1.03784 1.08586 1.24110 0.97012 0.98191 1.01699 1.78241 0.99547 1.18590 1.12850 1.44528 1.06634 1.18336 1.21698 1.19804 0.80467 1.20234 1.25108 0.86749 1.25635 1.00986 0.95368 0.95124 1.70212 1.36363 1.15486 1.17730 0.85905 0.80606 0.78710 0.78966 1.19189 1.20155 1.19192 1.21268 0.90948 1.03513 1.07986 1.22317 0.96957 0.98725 0.97467 0.92936 0.92935 0.92670 0.91644 0.92004 0.92109 0.90522 0.89516 0.89431 0.77206 0.80736 0.91462 0.83820 0.91747 0.91852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.12 37.15 0.34 -0.75 16 2 C -0.10 -0.87 3.45 -88.96 -0.31 -1.17 16 3 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 4 C -0.12 -1.23 6.33 -24.70 -0.16 -1.39 16 5 C -0.11 -1.40 5.40 -25.03 -0.14 -1.54 16 6 C -0.07 -0.87 2.55 -89.50 -0.23 -1.10 16 7 H 0.08 1.08 7.95 -51.93 -0.41 0.66 16 8 C -0.13 -1.52 4.83 -27.88 -0.13 -1.65 16 9 C 0.50 8.50 7.58 -10.99 -0.08 8.42 16 10 O -0.53 -11.21 11.94 5.53 0.07 -11.14 16 11 N -0.63 -11.24 5.47 -10.00 -0.05 -11.29 16 12 C -0.06 -1.35 6.90 -83.84 -0.58 -1.93 16 13 C -0.03 -0.93 10.85 -17.04 -0.18 -1.11 16 14 N -0.26 -7.74 10.40 30.80 0.32 -7.42 16 15 N -0.14 -4.03 3.74 -11.41 -0.04 -4.07 16 16 C -0.32 -8.71 10.25 -14.81 -0.15 -8.86 16 17 H 0.11 2.74 7.83 -52.49 -0.41 2.32 16 18 C 0.05 1.20 5.50 -17.50 -0.10 1.11 16 19 N -0.77 -21.89 11.81 55.50 0.66 -21.24 16 20 Si 0.93 19.16 29.55 -169.99 -5.02 14.13 16 21 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 22 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 23 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 24 C -0.09 -2.07 11.49 -16.39 -0.19 -2.26 16 25 C -0.12 -1.07 6.03 -25.61 -0.15 -1.23 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.42 8.12 -51.93 -0.42 0.00 16 29 H 0.06 0.65 8.05 -51.93 -0.42 0.24 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.77 7.77 -51.93 -0.40 0.37 16 32 H 0.08 1.14 7.63 -51.93 -0.40 0.74 16 33 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.09 0.87 8.02 -51.93 -0.42 0.45 16 35 H 0.40 5.41 8.82 -40.82 -0.36 5.05 16 36 H 0.18 4.65 5.92 -52.49 -0.31 4.34 16 37 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 38 H 0.14 2.87 8.06 -52.49 -0.42 2.45 16 39 H 0.06 0.57 7.84 -51.93 -0.41 0.16 16 40 H 0.06 0.51 7.67 -51.93 -0.40 0.11 16 LS Contribution 327.21 15.07 4.93 4.93 Total: -1.00 -32.99 327.21 -7.24 -40.23 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -6.03 Total: 9.33 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: -2.06 Total: -13.47 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: 0.88 Total: -44.02 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.07 Total: -11.14 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.02 Total: 14.13 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.99 -7.24 -40.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759170422.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.963 kcal (2) G-P(sol) polarization free energy of solvation -32.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds