Wall clock time and date at job start Mon Mar 30 2020 02:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 110.43792 * 2 1 4 4 C 1.54891 * 110.60085 * 237.38204 * 2 1 3 5 5 C 1.54963 * 102.78047 * 203.35337 * 4 2 1 6 6 C 1.54268 * 104.15908 * 37.88535 * 5 4 2 7 7 H 1.08998 * 110.03029 * 95.75263 * 6 5 4 8 8 C 1.53002 * 110.03549 * 217.13880 * 6 5 4 9 9 C 1.50697 * 109.46884 * 292.91052 * 8 6 5 10 10 O 1.21308 * 120.00082 * 359.97438 * 9 8 6 11 11 N 1.34774 * 119.99954 * 179.97438 * 9 8 6 12 12 C 1.40594 * 120.00067 * 179.97438 * 11 9 8 13 13 C 1.40650 * 126.08395 * 359.97438 * 12 11 9 14 14 N 1.30905 * 108.38944 * 180.02562 * 13 12 11 15 15 N 1.40075 * 108.40615 * 359.97438 * 14 13 12 16 16 C 1.37323 * 126.06722 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00043 * 180.02562 * 16 15 14 18 18 C 1.38990 * 120.00330 * 0.02562 * 16 15 14 19 19 N 1.31299 * 119.99795 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00284 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46923 * 60.00065 * 20 18 16 22 22 H 1.48496 * 109.47129 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47010 * 300.00313 * 20 18 16 24 24 C 1.35685 * 126.08136 * 179.97438 * 12 11 9 25 25 C 1.53874 * 106.64301 * 336.44861 * 6 5 4 26 26 H 1.08998 * 109.47774 * 297.46337 * 1 2 3 27 27 H 1.09002 * 109.47052 * 57.45722 * 1 2 3 28 28 H 1.09003 * 109.47472 * 177.45591 * 1 2 3 29 29 H 1.09005 * 110.75487 * 321.64425 * 4 2 1 30 30 H 1.08995 * 110.75560 * 84.82488 * 4 2 1 31 31 H 1.08997 * 110.47482 * 279.23899 * 5 4 2 32 32 H 1.08995 * 110.53216 * 156.56631 * 5 4 2 33 33 H 1.08993 * 109.46964 * 172.90773 * 8 6 5 34 34 H 1.08998 * 109.47113 * 52.90782 * 8 6 5 35 35 H 0.96996 * 120.00079 * 0.02562 * 11 9 8 36 36 H 1.08002 * 125.80681 * 0.03201 * 13 12 11 37 37 H 0.96995 * 119.99726 * 180.02562 * 19 18 16 38 38 H 1.07995 * 126.24897 * 359.95183 * 24 12 11 39 39 H 1.08999 * 110.03459 * 119.25648 * 25 6 5 40 40 H 1.08995 * 110.03640 * 240.69224 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0749 -0.7815 -1.2212 5 6 3.4943 -1.1959 -0.7574 6 6 3.3184 -1.5370 0.7368 7 1 3.1731 -2.6102 0.8602 8 6 4.5466 -1.0805 1.5268 9 6 5.7404 -1.9053 1.1202 10 8 5.6206 -2.7734 0.2813 11 7 6.9413 -1.6786 1.6885 12 6 8.0550 -2.4485 1.3095 13 6 8.0615 -3.4826 0.3563 14 7 9.2766 -3.9627 0.2760 15 7 10.0911 -3.2568 1.1707 16 6 11.4322 -3.4649 1.3798 17 1 11.9670 -2.8606 2.0977 18 6 12.1016 -4.4531 0.6677 19 7 11.4516 -5.1874 -0.2054 20 14 13.9261 -4.7357 0.9516 21 1 14.1552 -5.1001 2.3729 22 1 14.3986 -5.8374 0.0752 23 1 14.6749 -3.4937 0.6321 24 6 9.3148 -2.3260 1.7984 25 6 2.0698 -0.7774 1.2183 26 1 -0.3634 0.4739 0.9118 27 1 -0.3633 0.5528 -0.8663 28 1 -0.3634 -1.0267 -0.0456 29 1 1.4626 -1.6608 -1.4217 30 1 2.1248 -0.1389 -2.1001 31 1 4.1924 -0.3679 -0.8800 32 1 3.8371 -2.0703 -1.3105 33 1 4.3615 -1.2101 2.5930 34 1 4.7431 -0.0290 1.3173 35 1 7.0370 -0.9848 2.3595 36 1 7.2089 -3.8228 -0.2128 37 1 11.9186 -5.8774 -0.7021 38 1 9.6434 -1.6205 2.5471 39 1 1.3183 -1.4820 1.5745 40 1 2.3388 -0.0835 2.0146 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759170422.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:07 Heat of formation + Delta-G solvation = -0.265581 kcal Electronic energy + Delta-G solvation = -20948.905148 eV Core-core repulsion = 17763.568041 eV Total energy + Delta-G solvation = -3185.337107 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.69720 -40.52659 -38.96431 -35.87273 -34.91448 -33.48119 -32.21513 -30.65272 -29.64971 -27.97943 -26.61751 -25.01395 -22.86876 -22.09010 -21.20770 -21.02024 -20.15422 -19.27974 -17.94535 -17.38185 -16.85931 -16.44981 -16.30671 -15.73578 -15.63856 -15.12925 -14.82496 -14.44573 -14.40132 -14.07446 -13.71456 -13.47360 -13.30570 -13.22565 -12.86318 -12.85489 -12.55784 -12.14274 -11.92824 -11.76524 -11.62426 -11.57450 -11.49006 -11.38054 -11.17479 -10.96797 -10.81649 -10.48045 -10.09197 -8.49031 -8.46464 -6.23496 1.25687 1.39242 1.55976 1.59585 1.90682 2.08736 2.39386 2.56849 2.95863 3.09385 3.70139 3.72088 3.84540 4.13738 4.25564 4.39896 4.45409 4.61439 4.62374 4.65699 4.71838 4.78614 4.83593 4.85868 5.00598 5.01332 5.05528 5.14745 5.17291 5.23809 5.27189 5.31248 5.41072 5.44140 5.56588 5.62382 5.64483 5.96946 6.34706 6.75339 6.86128 7.46334 7.53524 7.71015 8.52986 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.061975 B = 0.002959 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.685230 B = 9460.885152 C = 9741.020318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.094 4.094 3 H 0.081 0.919 4 C -0.120 4.120 5 C -0.116 4.116 6 C -0.076 4.076 7 H 0.054 0.946 8 C -0.116 4.116 9 C 0.491 3.509 10 O -0.577 6.577 11 N -0.623 5.623 12 C -0.042 4.042 13 C -0.063 4.063 14 N -0.312 5.312 15 N -0.170 5.170 16 C -0.355 4.355 17 H 0.141 0.859 18 C -0.009 4.009 19 N -0.827 5.827 20 Si 1.020 2.980 21 H -0.253 1.253 22 H -0.279 1.279 23 H -0.253 1.253 24 C -0.085 4.085 25 C -0.109 4.109 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.038 0.962 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.419 0.581 36 H 0.165 0.835 37 H 0.276 0.724 38 H 0.188 0.812 39 H 0.068 0.932 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.165 13.011 5.853 20.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.113 4.113 3 H 0.099 0.901 4 C -0.158 4.158 5 C -0.154 4.154 6 C -0.095 4.095 7 H 0.073 0.927 8 C -0.156 4.156 9 C 0.280 3.720 10 O -0.456 6.456 11 N -0.268 5.268 12 C -0.148 4.148 13 C -0.238 4.238 14 N -0.144 5.144 15 N 0.061 4.939 16 C -0.486 4.486 17 H 0.158 0.842 18 C -0.220 4.220 19 N -0.455 5.455 20 Si 0.839 3.161 21 H -0.177 1.177 22 H -0.204 1.204 23 H -0.177 1.177 24 C -0.235 4.235 25 C -0.147 4.147 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.256 0.744 36 H 0.182 0.818 37 H 0.085 0.915 38 H 0.205 0.795 39 H 0.087 0.913 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.502 11.384 4.555 18.990 hybrid contribution 0.389 0.192 0.305 0.530 sum -14.113 11.575 4.860 18.889 Atomic orbital electron populations 1.21788 0.94276 1.01741 1.02145 1.21969 0.95958 0.99257 0.94091 0.90087 1.22602 0.95234 0.99735 0.98200 1.22343 0.97238 0.99892 0.95898 1.21487 0.93858 0.99676 0.94454 0.92739 1.21850 0.90189 1.00369 1.03143 1.21642 0.84615 0.84610 0.81168 1.90579 1.85022 1.35533 1.34494 1.42621 1.06083 1.36162 1.41959 1.17402 0.88306 1.02589 1.06505 1.24151 0.96325 1.00034 1.03336 1.78133 1.00847 1.20618 1.14840 1.44834 1.07340 1.19388 1.22349 1.20580 0.80617 1.21274 1.26147 0.84176 1.26913 1.06531 0.94411 0.94124 1.70406 1.38888 1.16688 1.19529 0.84641 0.73335 0.78827 0.79311 1.17651 1.20355 1.17674 1.22025 0.90626 1.02972 1.07847 1.22275 0.95398 0.98894 0.98099 0.91717 0.92476 0.93040 0.92066 0.91484 0.92380 0.94288 0.86199 0.86420 0.74362 0.81766 0.91455 0.79528 0.91311 0.89590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.12 71.98 0.66 -1.11 16 2 C -0.09 -1.40 3.45 -9.72 -0.03 -1.44 16 3 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 4 C -0.12 -2.33 6.33 31.91 0.20 -2.12 16 5 C -0.12 -2.92 5.40 31.70 0.17 -2.75 16 6 C -0.08 -1.67 2.55 -10.07 -0.03 -1.70 16 7 H 0.05 1.48 7.95 -2.39 -0.02 1.46 16 8 C -0.12 -2.36 4.83 29.85 0.14 -2.22 16 9 C 0.49 16.38 7.58 87.66 0.66 17.04 16 10 O -0.58 -25.08 11.94 -3.12 -0.04 -25.12 16 11 N -0.62 -21.16 5.47 -303.92 -1.66 -22.82 16 12 C -0.04 -1.95 6.90 37.73 0.26 -1.69 16 13 C -0.06 -3.56 10.85 85.42 0.93 -2.63 16 14 N -0.31 -19.35 10.40 -56.47 -0.59 -19.94 16 15 N -0.17 -9.64 3.74 -190.01 -0.71 -10.35 16 16 C -0.36 -19.15 10.25 84.01 0.86 -18.29 16 17 H 0.14 6.51 7.83 -2.91 -0.02 6.48 16 18 C -0.01 -0.45 5.50 84.95 0.47 0.02 16 19 N -0.83 -48.82 11.81 21.66 0.26 -48.57 16 20 Si 1.02 39.16 29.55 68.60 2.03 41.19 16 21 H -0.25 -9.02 7.11 99.48 0.71 -8.31 16 22 H -0.28 -10.62 7.11 99.48 0.71 -9.91 16 23 H -0.25 -9.03 7.11 99.48 0.71 -8.33 16 24 C -0.08 -3.98 11.49 83.38 0.96 -3.02 16 25 C -0.11 -1.66 6.03 31.32 0.19 -1.47 16 26 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.05 0.68 8.12 -2.39 -0.02 0.66 16 29 H 0.06 1.22 8.05 -2.38 -0.02 1.20 16 30 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.06 1.46 7.77 -2.39 -0.02 1.44 16 32 H 0.04 1.25 7.63 -2.39 -0.02 1.23 16 33 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.12 1.80 8.02 -2.39 -0.02 1.78 16 35 H 0.42 10.05 8.82 -92.71 -0.82 9.23 16 36 H 0.17 9.38 5.92 -2.91 -0.02 9.36 16 37 H 0.28 15.00 8.31 -92.71 -0.77 14.23 16 38 H 0.19 6.88 8.06 -2.91 -0.02 6.86 16 39 H 0.07 1.02 7.84 -2.39 -0.02 1.00 16 40 H 0.09 0.96 7.67 -2.39 -0.02 0.95 16 Total: -1.00 -77.32 327.21 4.95 -72.37 By element: Atomic # 1 Polarization: 34.38 SS G_CDS: 0.22 Total: 34.60 kcal Atomic # 6 Polarization: -26.81 SS G_CDS: 5.44 Total: -21.37 kcal Atomic # 7 Polarization: -98.97 SS G_CDS: -2.70 Total: -101.67 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.04 Total: -25.12 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 2.03 Total: 41.19 kcal Total: -77.32 4.95 -72.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759170422.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.100 kcal (2) G-P(sol) polarization free energy of solvation -77.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds